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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-041563

Length: 997

Sequence:  [FASTA format sequence]
NGGTGXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXGAGCCG
AGCCGAGCGC CCGCCGCTGC CCGCCGCCCG CTGCGTGCGC CTCCGCGCCA TGGCTGGCCT
CAACTCCCTG GAGGCGGTGA AACGCAAGAT CCAGGCCCTG CAGCAGCAGG CGGACGAGGC
AGAGGATCGC GCGCAGGGCC TGCAGCGGGA GCTGGACGGC GAGCGCGAGC GGCGGGAGAA
AGCCGAAGGG GATGTAGCAG CTCTCAATCG GCGCATCCAA CTCGTTGAGG AGGAGTTGGA
CAGGGCTCAG GAACGACTGG CCACAGCCCT GCAGAAGCTT GAGGAGGCAG AAAAGGCTGC
AGATGAGAGC GAGAGAGGAA TGAAGGTGAT AGAAAACCGG GCCATGAAAG ATGAGGAGAA
GATGGAGATT CAGGAGCGTG CCGAGGTGTC TGAACTAAAA TGTGGTGACC TGGAAGAAGA
ACTCAAGAAT GTCACCAACA ACCTGAAGTC GCTAGAGGCT GCATCTGAAA AGTATTCTGA
AAAGGAGGAT AAATATGAAG AAGAGATTAA ACTTCTGTCT GACAAACTGA AAGAGGCTGA
GACCCGTGCT GAATTTGCAG AGAGAACAGT TGCAAAACTG GAAAAGACCA TCGATGACCT
GGAAGAAAAA CTTGCCCAGG CCAAAGAAGA GAACGTGGGC TTACATCAGA CACTGGATCA
GACACTAAAC GAACTAAACT GTATATAACC AAAACAGAAG AGTCTCGTTC CATCAGAAAC
TCCAGAGCTA CGTGTTTTTC TCTTCTCTTG NTAGAAAGTT CTTTTNNGTA TGCCTCTTTG
CTTNGCTGGA AATGTNCAGC AAATTATGAA TACGTGACCN NAATATTTGT ATCAGAAAAG
CTTTGAGCAC AGTTTAATCT ATTCCTTCCT TTTTTTTCAG TGGCACAGCT TTTTCAGCTC
TATTTTATCC TNAATTGCAT TTATCCCTAA GTANGCAGGT TATTTCATAT GAGCATACTC
TTCTAGACTG AGGGCATTGG TTCTGGGAGA ATAGACACCC CACACTTTAA ATACNGACTC
ATGTCTAGTC TGGGTCATTT NAAAGTGAGA ATTCACTGCT GTCCACTATA GAGGCAGGAC
ATCCATAAAT GATGGGATTT TCAGCNNATA AAAAAAAAAG CCATTGGCCC ACTGCAGTCG
CCGCTTAAGA TCTCAAGGCA GCTACGTACA CTTCTGTAAG GTCTAAGGAG CAATAAGCAG
CCGGCCCTTA ACCCCGCGAA ACCACTGATT GGAAACTTTG GTGGCTTGCA CCCCAATACC
CGAAAATTTG GGGTGACCCT CGCCGTTCCA GATAAAAAAG GAATTGTAAA CCGGTCCCCG
TGACCCGGTT CCCCCAATTT TTATACAATC TTCGGCTCCN NNNNNNNNNN NNNNNNNNNN
NNNNNNNNNN NNNTTNNC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin 4	233	2e-61	O
		LOC389667	similar to tropomyosin 4	173	2e-43	O
		LOC389667	similar to tropomyosin 4	168	6e-42	O
		TPM1	tropomyosin 1 (alpha)	155	7e-38	O
		TPM3	tropomyosin 3	150	2e-36	O
		TPM1	tropomyosin 1 (alpha)	148	6e-36
		TPM1	tropomyosin 1 (alpha)	148	8e-36
		TPM2	tropomyosin 2 (beta)	137	1e-32
		LOC643634	similar to tropomyosin 4	134	2e-31	O
		LOC643634	similar to tropomyosin 4	134	2e-31	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tpm4	tropomyosin 4	228	1e-59	O
		Tpm1	tropomyosin 1, alpha	148	8e-36
		Tpm2	tropomyosin 2, beta	130	2e-30
		Tpm3	tropomyosin 3, gamma	120	3e-27

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		TPM1	tropomyosin 1 (alpha)	179	5e-45	O
		LOC480137	similar to tropomyosin 3 isoform 2	166	2e-41	O
		TPM1	tropomyosin 1 (alpha)	160	2e-39	O
		LOC480137	similar to tropomyosin 3 isoform 2	158	9e-39	O
		TPM1	tropomyosin 1 (alpha)	156	3e-38	O
		TPM1	tropomyosin 1 (alpha)	155	4e-38	O
		TPM1	tropomyosin 1 (alpha)	154	1e-37	O
		LOC484695	similar to tropomyosin 3 isoform 2	150	2e-36	O
		LOC480137	similar to tropomyosin 3 isoform 2	150	2e-36	O
		LOC480137	similar to tropomyosin 3 isoform 2	150	2e-36	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		LOC535277	similar to tropomyosin 4	189	3e-48	O
		LOC535277	similar to tropomyosin 4	186	2e-47
		LOC535277	similar to tropomyosin 4	186	2e-47
		LOC512435	similar to tropomyosin 3 isoform 2	145	4e-35	O
		LOC512435	similar to tropomyosin 3 isoform 2	145	4e-35	O
		TPM3	tropomyosin 3	129	3e-30
		TPM1	tropomyosin 1 (alpha)	125	4e-29
		LOC540799	similar to tropomyosin 3 isoform 2	120	2e-27	O
		LOC512435	similar to tropomyosin 3 isoform 2	120	2e-27	O
		TPM2	tropomyosin 2	112	6e-25

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin 4	233	5e-63	O
		TPM3	tropomyosin 3	150	6e-38	O