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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20070806C-002574

Length: 1,042

Sequence:  [FASTA format sequence]
GCACTCCAGG AGGACACGCG GGCAGCTGGG GCGTGGGATT CCTGCAGAGA CCTCGGTGGA
GGGTCAGAGG CCCGCGCCGA GCCCGTGTCC ACGGGGGTCG CTCCTCCTCC GCTGGAGGGA
CTGACTTACA ATTTGGGTCC AGAGCGCACA GCGCGGGGCT ACGAGGGTGC GCAGTTCCCC
GGGTCCCCCG AGTCCCCGAC GCCCGGCGAG GAGATCTGGG TTTTCCAGCG CGCCCCGCAA
GACGCCTCTG CTCAGGAGCC CGGCGCCGGG GCCCCGCGAT GGCCGCGGGC CGCAGCCTCA
GGGAGCTGCT GCCGCGTGGG TGCCGGGGCG CCCCTCCCTA GCGGGGCGCA GCCTGCGCCC
GGTCCCCGCC CGACCAGCGG AATGGGGGGC GGAGGGTCTG CCCTGAGGGT CTGCGCGGAC
CACCGCGGGG GCATCAACTG GCTCAGCCTG AGCCCCGACG GGCAGCGCCT GCTGACGGGC
AGCGAGGACG GCACCGCCCG GCTCTGGAGC ACCGCGGACG GCCAGTGCTG CGCCCTCCTG
CAAGGACATG AAAGCTACGT GACCTTCTGC CAGCTGGAGG ACGAAGCTGC CTTCACGTGC
AGCGCTGACT GCACCATCCG GAAGTGGGAC GTGCTGACCG GGCAGTGTCT GCAGGTGTTC
CGGGGACACA CATCCATTGT GAACAGGATC CTGGTCACCA ACAACCAGCT CTTCAGCAGT
TCCTATGACC GGACAGCTCG CGCCTGGAGT GTAGACAAAG GGCAGGTGTC GCGGGAGTTC
CGGGGCCACC GCAACTGTGT GCTGACTCTA GCCTACTCTG CCCCCTGGGA CCTGCCTGGG
GCTCCCTGCG TGGAGGAGGC CGTGGCTGGG GGGCTTCTGG TGACGGGAAG CACAGACGGC
ACAGCCAAGG TGTGGCAAGT GGCCAGTGGC TGCTGCCACC AGACGCTGCG GGGCCACACG
GGCGCCGTGC TCTGCCTGGT GTTGGACACA CCTGGGCACA CAGCCTTCAC CGGCAGCACC
GACGCCACCA TCCGCGCCTG GG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		WDR86	WD repeat-containing protein 86 [Homo sapiens].	439	e-123	O
		WDR38	WD repeat-containing protein 38 [Homo sapiens].	129	6e-30	O
		FBXW7	F-box/WD repeat-containing protein 7 isoform 3 [Homo sapiens].	112	4e-25
		FBXW7	F-box/WD repeat-containing protein 7 isoform 2 [Homo sapiens].	112	4e-25
		FBXW7	F-box/WD repeat-containing protein 7 isoform 1 [Homo sapiens].	112	4e-25
		TAF5	transcription initiation factor TFIID subunit 5 [Homo sapiens].	109	5e-24
		WDR5	WD repeat-containing protein 5 [Homo sapiens].	100	2e-21	O
		PAFAH1B1	platelet-activating factor acetylhydrolase IB subunit alpha [Homo sapiens].	100	3e-21
		WDR5	WD repeat-containing protein 5 [Homo sapiens].	100	2e-21	O
		WDR69	WD repeat-containing protein 69 [Homo sapiens].	98.6	8e-21	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Wdr86	WD repeat domain 86 [Mus musculus].	405	e-113	O
		Fbxw7	F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].	112	4e-25
		Fbxw7	F-box/WD repeat-containing protein 7 isoform 2 [Mus musculus].	112	4e-25
		Fbxw7	F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].	112	4e-25
		Taf5	transcription initiation factor TFIID subunit 5 [Mus musculus].	109	4e-24
		Wdr38	WD repeat-containing protein 38 [Mus musculus].	107	2e-23	O
		Wdr5	WD repeat-containing protein 5 [Mus musculus].	100	2e-21	O
		Pafah1b1	platelet-activating factor acetylhydrolase IB subunit alpha [Mus musculus].	100	2e-21
		Fbxw11	F-box/WD repeat-containing protein 11 [Mus musculus].	97.1	2e-20
		Wdr5b	WD repeat-containing protein 5B [Mus musculus].	94.7	1e-19	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC475544	"PREDICTED: similar to F-box and WD-40 domain protein 7, archipelago homolog [Canis familiaris]. "	332	4e-91	O
		LOC475465	PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 3 [Canis familiaris].	114	1e-25	O
		LOC475465	PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 2 [Canis familiaris].	112	4e-25
		LOC475465	PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 5 [Canis familiaris].	112	4e-25
		LOC475465	PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 1 [Canis familiaris].	112	4e-25
		LOC480656	PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 1 [Canis familiaris].	100	3e-21	O
		LOC480656	PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 3 [Canis familiaris].	100	3e-21	O
		LOC480656	PREDICTED: similar to platelet-activating factor acetylhydrolase beta subunit isoform 2 [Canis familiaris].	100	3e-21
		LOC479291	PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 2 [Canis familiaris].	97.1	3e-20
		LOC479291	PREDICTED: similar to F-box/WD-repeat protein 11 (F-box/WD-repeat protein 1B) (F-box and WD-repeats protein beta-TrCP2) isoform 8 [Canis familiaris].	97.1	3e-20

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		WDR86	PREDICTED: WD repeat domain 86 [Bos taurus].	413	e-115	O
		WDR86	WD repeat-containing protein 86 [Bos taurus].	411	e-115	O
		WDR38	WD repeat-containing protein 38 [Bos taurus].	136	3e-32	O
		FBXW7	F-box/WD repeat-containing protein 7 [Bos taurus].	112	4e-25
		TAF5	"PREDICTED: TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa [Bos taurus]. "	109	5e-24
		TAF5	"PREDICTED: TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa [Bos taurus]. "	109	5e-24
		WDR5	WD repeat-containing protein 5 [Bos taurus].	100	2e-21	O
		PAFAH1B1	platelet-activating factor acetylhydrolase IB subunit alpha [Bos taurus].	100	3e-21
		FBXW11	PREDICTED: F-box and WD repeat domain containing 11 [Bos taurus].	97.1	2e-20
		FBXW11	PREDICTED: F-box and WD repeat domain containing 11 isoform 1 [Bos taurus].	97.1	2e-20

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100522172	PREDICTED: WD repeat-containing protein 86-like [Sus scrofa].	251	4e-67	O
		LOC100522910	PREDICTED: ATP-binding cassette sub-family F member 2-like [Sus scrofa].	183	1e-46
		LOC100154489	PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].	135	4e-32	O
		TAF5	PREDICTED: transcription initiation factor TFIID subunit 5 [Sus scrofa].	109	2e-24
		WDR5	PREDICTED: WD repeat-containing protein 5 [Sus scrofa].	100	1e-21	O
		LOC100516126	PREDICTED: WD repeat-containing protein 5-like [Sus scrofa].	100	1e-21	O
		PAFAH1B1	platelet-activating factor acetylhydrolase IB subunit alpha [Sus scrofa].	99.8	2e-21
		BTRC	PREDICTED: f-box/WD repeat-containing protein 1A [Sus scrofa].	93.2	2e-19
		LOC100515511	PREDICTED: WD repeat-containing protein 69-like [Sus scrofa].	92.4	3e-19
		LOC100514171	PREDICTED: pleiotropic regulator 1-like [Sus scrofa].	90.9	9e-19

Alignment:      TOP

20070806C-002574 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVR01_0031_F06.b : aggcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0011_G02.b :                                                             


20070806C-002574 : .........................GCACTCCAGGAGGACACGCGGGCAGCTGGGGCGTG
                   ---------+---------+---------+---------+---------+---------+ 35
OVR01_0031_F06.b : xxxxxxxxxxxxxxxxxxxxxxxxxGCACTCCAGGAGGACACGCGGGCAGCTGGGGCGTG
OVR01_0011_G02.b :                                                             


20070806C-002574 : GGATTCCTGCAGAGACCTCGGTGGAGGGTCAGAGGCCCGCGCCGAGCCCGTGTCCACGGG
                   ---------+---------+---------+---------+---------+---------+ 95
OVR01_0031_F06.b : GGATTCCTGCAGAGACCTCGGTGGAGGGTCAGAGGCCCGCGCCGAGCCCGTGTCCACGGG
OVR01_0011_G02.b :    ncaacaattgaacatxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20070806C-002574 : GGTCGCTCCTCCTCCGCTGGAGGGACTGACTTACAATTTGGGTCCAGAGCGCACAGCGCG
                   ---------+---------+---------+---------+---------+---------+ 155
OVR01_0031_F06.b : GGTCGCTCCTCCTCCGCTGGAGGGACTGACTTACAATTTGGGTCCAGAGCGCACAGCGCG
OVR01_0011_G02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCACAGCGCG


20070806C-002574 : GGGCTACGAGGGTGCGCAGTTCCCCGGGTCCCCCGAGTCCCCGACGCCCGGCGAGGAGAT
                   ---------+---------+---------+---------+---------+---------+ 215
OVR01_0031_F06.b : GGGCTACGAGGGTGCGCAGTTCCCCGGGTCCCCCGAGTCCCCGACGCCCGGCGAGGAGAT
OVR01_0011_G02.b : GGGCTACGAGGGTGCGCAGTTCCCCGGGTCCCCCGAGTCCCCGACGCCCGGCGAGGAGAT


20070806C-002574 : CTGGGTTTTCCAGCGCGCCCCGCAAGACGCCTCTGCTCAGGAGCCCGGCGCCGGGGCCCC
                   ---------+---------+---------+---------+---------+---------+ 275
OVR01_0031_F06.b : CTGGGTTTTCCAGCGCGCCCCGCAAGACGCCTCTGCTCAGGAgcccggcgccggggcccc
OVR01_0011_G02.b : CTGGGTTTTCCAGCGCGCCCCGCAAGACGCCTCTGCTCAGGAgcccggcgccggggcccc


20070806C-002574 : GCGATGGCCGCGGGCCGCAGCCTCAGGGAGCTGCTGCCGCGTGGGTGCCGGGGCGCCCCT
                   ---------+---------+---------+---------+---------+---------+ 335
OVR01_0031_F06.b : gcgatggccgcgggccgcAGCCTCAGGGAGCTGCTGCCGCGTGGGTGCCGGGGCGCCCCT
OVR01_0011_G02.b : gcgatggccgcgggccgcAGCCTCAGGGAGCTGCTGCCGCGTGGGTGCCGGGGCGCCCCT


20070806C-002574 : CCCTAGCGGGGCGCAGCCTGCGCCCGGTCCCCGCCCGACCAGCGGAATGGGGGGCGGAGG
                   ---------+---------+---------+---------+---------+---------+ 395
OVR01_0031_F06.b : CCCTAGCGGGGCGCAGCCTGCGCCCGGTCCCCGCCCGACCAGCGGAATGGGGGGCGGAGG
OVR01_0011_G02.b : CCCTAGCGGGGCGCAGCCTGCGCCCGGTCCCCGCCCGACCAGCGGAATGGGGGGCGGAGG


20070806C-002574 : GTCTGCCCTGAGGGTCTGCGCGGACCACCGCGGGGGCATCAACTGGCTCAGCCTGAGCCC
                   ---------+---------+---------+---------+---------+---------+ 455
OVR01_0031_F06.b : GTCTGCCCTGAGGGTCTGCGCGGACCACCGCGGGGGCATCAACTGGCTCAGCCTGAGCCC
OVR01_0011_G02.b : GTCTGCCCTGAGGGTCTGCGCGGACCACCGCGGGGGCATCAACTGGCTCAGCCTGAGCCC


20070806C-002574 : CGACGGGCAGCGCCTGCTGACGGGCAGCGAGGACGGCACCGCCCGGCTCTGGAGCACCGC
                   ---------+---------+---------+---------+---------+---------+ 515
OVR01_0031_F06.b : CGACGGGCAGCGCCTGCTGACGGGCAGCGAGGACGGCACCGCCCGGCTCTGGAGCACCGC
OVR01_0011_G02.b : CGACGGGCAGCGCCTGCTGACGGGCAGCGAGGACGGCACCGCCCGGCTCTGGAGCACCGC


20070806C-002574 : GGACGGCCAGTGCTGCGCCCTCCTGCAAGGACATGAAAGCTACGTGACCTTCTGCCAGCT
                   ---------+---------+---------+---------+---------+---------+ 575
OVR01_0031_F06.b : GGACGGCCAGTGCTGCGCCCTCCTGCAAGGACATGAAAGCTACGTGACCTTCTGCCAGCT
OVR01_0011_G02.b : GGACGGCCAGTGCTGCGCCCTCCTGCAAGGACATGAAAGCTACGTGACCTTCTGCCAGCT


20070806C-002574 : GGAGGACGAAGCTGCCTTCACGTGCAGCGCTGACTGCACCATCCGGAAGTGGGACGTGCT
                   ---------+---------+---------+---------+---------+---------+ 635
OVR01_0031_F06.b : GGAGGACGAAGCTGCCTTCACGTGCAGCGCTGACTGCACCATCCGGAAGTGGGACGTGCT
OVR01_0011_G02.b : GGAGGACGAAGCTGCCTTCACGTGCAGCGCTGACTGCACCATCCGGAAGTGGGACGTGCT


20070806C-002574 : GACCGGGCAGTGTCTGCAGGTGTTCCGGGGACACACATCCATTGTGAACAGGATCCTGGT
                   ---------+---------+---------+---------+---------+---------+ 695
OVR01_0031_F06.b : GACCGGGCAGTGTCTGCAGGTGTTCCGGGGACACACATCCATTGTGAACAGGATCCTGGT
OVR01_0011_G02.b : GACCGGGCAGTGTCTGCAGGTGTTCCGGGGACACACATCCATTGTGAACAGGATCCTGGT


20070806C-002574 : CACCAACAACCAGCTCTTCAGCAGTTCCTATGACCGGACAGCTCGCGCCTGGAGTGTAGA
                   ---------+---------+---------+---------+---------+---------+ 755
OVR01_0031_F06.b : CACCAACAACCAGCTCTTCAGCAGTTCCTATGACCGGACAGCTCGCGCCTGGAGTGTAGA
OVR01_0011_G02.b : CACCAACAACCAGCTCTTCAGCAGTTCCTATGACCGGACAGCTCGCGCCTGGAGTGTAGA


20070806C-002574 : CAAAGGGCAGGTGTCGCGGGAGTTCCGGGGCCACCGCAACTGTGTGCTGACTCTAGCCTA
                   ---------+---------+---------+---------+---------+---------+ 815
OVR01_0031_F06.b : CAAAGGGCAGGTGTCGCGGGAGTTCCGGGGCCACCGCAACTGTGTGCTGACTCTAGCCTA
OVR01_0011_G02.b : CAAAGGGCAGGTGTCGCGGGAGTTCCGGGGCCACCGCAACTGTGTGCTGACTCTAGCCTA


20070806C-002574 : CTCTGCCCCCTG*GGACCTGCCTGGGGCTCCCTGCGTGGAGGAGGCC*GTGGCTGGGGGG
                   ---------+---------+---------+---------+---------+---------+ 873
OVR01_0031_F06.b : CTCTGCCCCCTGGGGACCTGCCTGGGGGTCCCTGCGTGGAAGAGGCCCGGGGCTGGGGGG
OVR01_0011_G02.b : CTCTGCCCCCTG*GGACCTGCCTGGGGCTCCCTGCGTGGAGGAGGCC*GTGGCTGGGGGG


20070806C-002574 : CTTCTGGTGACGGGAAGCACAGACGGCACAGCCAAGGTGTGGCAAGTGGCCAGTGGCTGC
                   ---------+---------+---------+---------+---------+---------+ 933
OVR01_0031_F06.b : Ctttctggtgacgggaagcacagacgggacaaccaaggggggggcaggtgggcagtgggc
OVR01_0011_G02.b : CTTCTGGTGACGGGAAGCACAGACGGCACAGCCAAGGTGTGGCAAGTGGCCAGTGGCTGC


20070806C-002574 : TGCCACCAGACGCTGCGGGGCCACACGGGCGCCGTGCTCTGCCTGGTGTTGGACACACCT
                   ---------+---------+---------+---------+---------+---------+ 993
OVR01_0031_F06.b : tggtgccaccaaacgctgcgggggccacccgggcgcccgggttttgcctgggggttggac
OVR01_0011_G02.b : TGCCACCAGACGCTGCGGGGCCACACGGGCGCCGTGCTCTGCCTGGTGTTGGACACACCT


20070806C-002574 : GGGCACACAGCCTTCACCGGCAGCACCGACGCCACCATCCGCGCCTGGG...........
                   ---------+---------+---------+---------+---------+---------+ 1042
OVR01_0031_F06.b : aaaccttgggcccccaagccctttcccggggagaaccgaaagcccccctttcccccgccc
OVR01_0011_G02.b : GGGCACACAGCCTTCACCGGCAGCACCGACGCCACCATCCGCGCCTGGGacttcttgagt


20070806C-002574 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1042
OVR01_0031_F06.b : tgggaacattcctgagaggggggaaccccttgggccggggttttcgggggagccccccag
OVR01_0011_G02.b : ggggaggcgctgcgcgtgttccgggagcacaggggctcatcatctgtcctggagctggtg


20070806C-002574 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1042
OVR01_0031_F06.b : gggcttctccctttattttttttttttgggaaagttgggttggagaaaccccgggggacc
OVR01_0011_G02.b : aaccggcacgtgtactcgggcaacggcgacagggacggttcaagtgctgggttggcggga


20070806C-002574 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1042
OVR01_0031_F06.b : cggtggggtatttcttctcgggggcggccaaggcccccccccccaaaaaaga       
OVR01_0011_G02.b : ccggggcgaggggcgtggcgccacgtttcccccgccccccaaaaccccggggtgaagccc


20070806C-002574 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1042
OVR01_0031_F06.b :                                                             
OVR01_0011_G02.b : ccccttaaagataccccccgcccggggggccc