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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20070806C-003702

Length: 1,181

Sequence:  [FASTA format sequence]
GTGTTCGTGT AGGGGAGGCT GGAAGCCGCA GGAGCGGGAG ACGGTGGAGG GGATTTTGAG
AAGAAAACTG CGGTAGCGAC CTCACTCGGT GGTACAAGAG GGGAACGCTA GTCCCTCCGA
AAGCCGGGTT ACTGCGAACG CACCAGCTGA GCCCTTAGTA CTGCAACCCC CACCCTCCTT
TGGTTTGTGG AGGAGCCTGA CCACTCTGCC TCTTATGGCC ACAATGCTGA CCGCCCGCCT
CTCCAGACCC CTGTCGCAGC TCCCAAGGAA AACCCTGAAT TTCTCTGAGA GAGAAAATGG
AGCAAGAGGC TCGCTGCTGT TTTACTCTCC CTCCTTTGTC CCTGGCAGCC GTCGGACTTA
TGCTGATTCG GTGAACCCGG TTGGCAGCAA AGCTGTCCTG GTCACAGGCT GTGACTCTGG
ATTTGGGTTC TCACTGGCCA AGCATCTGCA TTCAAAAGGC TTCCTTGTAT TTGCTGGCTG
CTTGATGAAG GACAAAGGGC ATGACGGGGT CAAGGAACTG GACAGCTTGA AGAGTGATCG
ATTAAGAACC GTCCAGCTCA ATGTCTGCAA AAGTGAAGAA GTAGAGAAAG TGGTGGAGAC
CATCCGCTCG AGCTTGCAGG ACCCTGAGAA AGGCTTGTGG GGCCTGGTTA ACAATGCAGG
CATCTCAACG TTCGGGGACG TGGAATTCAC CAGCATGGAG ACCTACAAGG AGGTGGCAGA
AGTGAACCTC TGGGGCACGG TGCGGGTGAC AAAATCTTTT CTCCCTCTCA TCCGGAGGGC
CAAAGGCCGC GTGGTCAACA TCAGCAGCAT AATGGGCGCT TGGCCAATGT GAGCCGCTCC
CCCTACTGCA TCACCAAGTT CGGGGTGGAG GCTTTCTCTG ACTGCCTGCG CTACGAGATG
CACCCTCTAG GAGTGAAGGT CAGCGTGGTG GAGCCCGGCA ACTTCATCGT CGCCACCAGC
CTCTACAGCC CTGAGCGCAT CCGGGCCATC GCCACTAAGA TGTGGGAGCA GGTGCCCGAG
ACGGTGCGTC AAGACTACGG CAGGAAGTAC TTTGATGAGA TGGTCGCCAG GATGGAGAAC
TTCTGCAACA GCGGCTCCAC GGACACGTCT CCCGTCATCA ATGCTGTCAC CCACGCCCTG
ACCTCCACCA CCCCCTACAC TCGCTACCAC CCCATGGACT A

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		BDH1	"D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. "	305	e-142	O
		BDH1	"D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. "	305	e-142	O
		BDH1	"D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. "	305	e-142	O
		HSD17B2	estradiol 17-beta-dehydrogenase 2 [Homo sapiens].	116	5e-26	O
		RDH16	retinol dehydrogenase 16 [Homo sapiens].	111	1e-24	O
		DHRS9	dehydrogenase/reductase SDR family member 9 [Homo sapiens].	108	1e-40	O
		DHRS9	dehydrogenase/reductase SDR family member 9 [Homo sapiens].	108	1e-40	O
		DHRS9	dehydrogenase/reductase SDR family member 9 [Homo sapiens].	108	1e-40	O
		DHRS9	dehydrogenase/reductase SDR family member 9 [Homo sapiens].	108	1e-40	O
		HSD11B2	corticosteroid 11-beta-dehydrogenase isozyme 2 [Homo sapiens].	99.4	9e-32	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Bdh1	"D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus musculus]. "	296	e-140	O
		Bdh1	"D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus musculus]. "	296	e-140	O
		Hsd17b2	estradiol 17-beta-dehydrogenase 2 [Mus musculus].	125	8e-29	O
		Rdh16	retinol dehydrogenase 16 [Mus musculus].	113	3e-25	O
		Rdh1	retinol dehydrogenase 1 (all trans) [Mus musculus].	112	4e-25	O
		Rdh19	retinol dehydrogenase similar protein 2 [Mus musculus].	109	1e-43	O
		Rdh9	retinol dehydrogenase 9 [Mus musculus].	107	4e-43	O
		Dhrs9	dehydrogenase/reductase SDR family member 9 precursor [Mus musculus].	106	4e-39	O
		BC089597	cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like [Mus musculus].	104	3e-42	O
		Hsd11b2	corticosteroid 11-beta-dehydrogenase isozyme 2 [Mus musculus].	103	2e-32	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC488037	PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor [Canis familiaris].	243	e-123	O
		LOC489690	PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis familiaris].	116	5e-26	O
		LOC481118	PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis familiaris].	108	1e-23	O
		LOC481118	PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris].	108	1e-23	O
		LOC474409	PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Canis familiaris].	106	5e-23	O
		LOC474409	PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris].	106	5e-23	O
		LOC488391	PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase [Canis familiaris].	103	2e-38
		LOC481119	PREDICTED: similar to orphan short-chain dehydrogenase / reductase [Canis familiaris].	101	1e-21	O
		LOC481099	PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH) [Canis familiaris].	95.5	9e-20	O
		HSD11B2	"PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris]. "	87.4	1e-27	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		BDH1	"D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos taurus]. "	327	e-149	O
		HSD17B2	estradiol 17-beta-dehydrogenase 2 [Bos taurus].	124	2e-28	O
		HSD17B6	17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus].	118	1e-26	O
		RDH16	retinol dehydrogenase 16 [Bos taurus].	111	1e-24	O
		HSD11B2	corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus].	107	3e-23	O
		DHRS9	dehydrogenase/reductase SDR family member 9 precursor [Bos taurus].	103	2e-22	O
		SDR9C7	short-chain dehydrogenase/reductase family 9C member 7 [Bos taurus].	97.1	3e-20	O
		RDH5	11-cis retinol dehydrogenase [Bos taurus].	93.2	2e-35	O
		LOC100335501	PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos taurus].	58.9	6e-14	O
		DHRS7B	dehydrogenase/reductase SDR family member 7B [Bos taurus].	58.5	7e-14	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		BDH1	"PREDICTED: d-beta-hydroxybutyrate dehydrogenase, mitochondrial [Sus scrofa]. "	252	e-117	O
		LOC100156120	"PREDICTED: d-beta-hydroxybutyrate dehydrogenase, mitochondrial-like, partial [Sus scrofa]. "	252	8e-98	O
		LOC100511473	"PREDICTED: d-beta-hydroxybutyrate dehydrogenase, mitochondrial-like [Sus scrofa]. "	239	2e-63	O
		HSD17B2	estradiol 17-beta-dehydrogenase 2 [Sus scrofa].	116	2e-26	O
		HSD11B2	corticosteroid 11-beta-dehydrogenase isozyme 2 [Sus scrofa].	107	1e-23	O
		LOC100512656	PREDICTED: retinol dehydrogenase 16-like isoform 1 [Sus scrofa].	106	2e-23	O
		LOC100512656	PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa].	106	2e-23	O
		LOC100519057	"PREDICTED: dehydrogenase/reductase SDR family member 9-like, partial [Sus scrofa]. "	105	5e-32	O
		LOC100519223	PREDICTED: dehydrogenase/reductase SDR family member 9-like isoform 2 [Sus scrofa].	105	2e-38	O
		LOC100519223	PREDICTED: dehydrogenase/reductase SDR family member 9-like isoform 1 [Sus scrofa].	105	2e-38	O

Alignment:      TOP

20070806C-003702 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LVRM1_0109_C11.b :                     nagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0026_B11.b : cttagggtgaatatanngacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0013_F12.b :                                                             


20070806C-003702 : ......................GTGTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
                   ---------+---------+---------+---------+---------+---------+ 38
LVRM1_0109_C11.b : xxxxxxxxxxxxxxxxxxxxxxGTGTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
LVR01_0026_B11.b : xxxxxxxxxxxxxxxxxxxxxxGTGTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
LVRM1_0013_F12.b :                                                             


20070806C-003702 : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
                   ---------+---------+---------+---------+---------+---------+ 98
LVRM1_0109_C11.b : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
LVR01_0026_B11.b : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
LVRM1_0013_F12.b :                                                             


20070806C-003702 : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
                   ---------+---------+---------+---------+---------+---------+ 158
LVRM1_0109_C11.b : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
LVR01_0026_B11.b : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
LVRM1_0013_F12.b :                                                             


20070806C-003702 : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
                   ---------+---------+---------+---------+---------+---------+ 218
LVRM1_0109_C11.b : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
LVR01_0026_B11.b : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
LVRM1_0013_F12.b :                                                             


20070806C-003702 : CCACAATGCTGACCGCCCGCCTCTCCAGACCCCTGTCGCAGCTCCCAAGGAAAACCCTGA
                   ---------+---------+---------+---------+---------+---------+ 278
LVRM1_0109_C11.b : CCACAATGCTGACCGCCCGCCTCTCCAGGCCCCTGTCACAGCTCCCAAGGAAAACCCTGA
LVR01_0026_B11.b : CCACAATGCTGACCGCCCGCCTCTCCAGACCCCTGTCGCAGCTCCCAAGGAAAACCCTGA
LVRM1_0013_F12.b :                                                             


20070806C-003702 : ATTTCTCTGAGAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
                   ---------+---------+---------+---------+---------+---------+ 338
LVRM1_0109_C11.b : ATTTCTCTGACAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
LVR01_0026_B11.b : ATTTCTCTGAGAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
LVRM1_0013_F12.b :                                                             


20070806C-003702 : TCCCTGGCAGCCGTCGGACTTATGCTGATTCGGTGAACCCGGTTGGCAGCAAAGCTGTCC
                   ---------+---------+---------+---------+---------+---------+ 398
LVRM1_0109_C11.b : TCCCTGGCGGCCGTCGGACTTATGCTGATTCAGTGAACCCGGTTGGTAGCAAAGCTGTCC
LVR01_0026_B11.b : TCCCTGGCAGCCGTCGGACTTATGCTGATTCGGTGAACCCGGTTGGCAGCAAAGCTGTCC
LVRM1_0013_F12.b :                                                             


20070806C-003702 : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
                   ---------+---------+---------+---------+---------+---------+ 458
LVRM1_0109_C11.b : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
LVR01_0026_B11.b : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
LVRM1_0013_F12.b :      agttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20070806C-003702 : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC
                   ---------+---------+---------+---------+---------+---------+ 518
LVRM1_0109_C11.b : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAAGACAAAGGGCATGACGGGGTCAAGGAAC
LVR01_0026_B11.b : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC
LVRM1_0013_F12.b : xxxxCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC


20070806C-003702 : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG
                   ---------+---------+---------+---------+---------+---------+ 578
LVRM1_0109_C11.b : TGGACAGCTTGTAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCTAAAGTGAAG
LVR01_0026_B11.b : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG
LVRM1_0013_F12.b : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG


20070806C-003702 : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT
                   ---------+---------+---------+---------+---------+---------+ 638
LVRM1_0109_C11.b : AAGTACAGAAAGTGGTGGAGACCATCCGCCCGAGCTTGCAGGACCCTGAGAAAGGCTCGT
LVR01_0026_B11.b : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT
LVRM1_0013_F12.b : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT


20070806C-003702 : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG
                   ---------+---------+---------+---------+---------+---------+ 698
LVRM1_0109_C11.b : GGGGCCTGGTTAACATTGCATGCATCTCAACGTTCGGGGACGTGGCATTCACCCGCATGG
LVR01_0026_B11.b : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG
LVRM1_0013_F12.b : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG


20070806C-003702 : AGACC*TACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCT
                   ---------+---------+---------+---------+---------+---------+ 757
LVRM1_0109_C11.b : AGATC*TACAAA*ATGTGGCAGAAGTGAAACTCTGGGGCACGGTGCAGGTGACAAAATCt
LVR01_0026_B11.b : AGACC*TACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCC
LVRM1_0013_F12.b : AGACCATACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCT


20070806C-003702 : TTTCTCCCTCTCATCCGGAGGGCCAAAGGCCGCGTGGTCAACATCAGCAGCATAATGGGC
                   ---------+---------+---------+---------+---------+---------+ 817
LVRM1_0109_C11.b : tt                                                         
LVR01_0026_B11.b : TTTCTCCCTCTCATCCGGAGGGCCAAAGatttccaagaaacaacaacctcaaaatgtcca
LVRM1_0013_F12.b : TTTCTCCCTCTCATCCGGAGGGCCAAAGGCCGCGTGGTCAACATCAGCAGCATAATGGGC


20070806C-003702 : GCTTGGCCAATGTGAGCCGCTCCCCCTACTGCATCACCAAGTTCGGGGTGGAGGCTTTCT
                   ---------+---------+---------+---------+---------+---------+ 877
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : agtcatcaaggaccccatctggacgggaaagcttggtactgctcgctgttttactaccaa
LVRM1_0013_F12.b : GCTTGGCCAATGTGAGCCGCTCCCCCTACTGCATCACCAAGTTCGGGGTGGAGGCTTTCT


20070806C-003702 : CTGACTGCCTGCGCTACGAGATGCACCCTCTAGGAGTGAAGGTCAGCGTGGTGGAGCCCG
                   ---------+---------+---------+---------+---------+---------+ 937
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : gttcccttgtcacctgggcaagtcccttctccattttccacctcactctcctcatttaaa
LVRM1_0013_F12.b : CTGACTGCCTGCGCTACGAGATGCACCCTCTAGGAGTGAAGGTCAGCGTGGTGGAGCCCG


20070806C-003702 : GCAACTTCATCGTCGCCACCAGCCTCTACAGCCCTGAGCGCATCCGGGCCATCGCCACTA
                   ---------+---------+---------+---------+---------+---------+ 997
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : aatagcagtaatgacaacaatcataaccattcctaacacgctgtgacccaggcagaacat
LVRM1_0013_F12.b : GCAACTTCATCGTCGCCACCAGCCTCTACAGCCCTGAGCGCATCCGGGCCATCGCCACTA


20070806C-003702 : AGATGTGGGAGCAGGTGCCCGAGACGGTGCGTCAAGACTACGGCAGGAAGTACTTTGATG
                   ---------+---------+---------+---------+---------+---------+ 1057
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : gctctaaaaccaactgcctgcctaatttctaccaccccttttaagggaaacagcagttat
LVRM1_0013_F12.b : AGATGTGGGAGCAGGTGCCCGAGACGGTGCGTCAAGACTACGGCAGGAAGTACTTTGATG


20070806C-003702 : AGATGGTCGCCAGGATGGAGAACTTCTGCAACAGCGGCTCCACGGACACGTCTCCCGTCA
                   ---------+---------+---------+---------+---------+---------+ 1117
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : tttttatttcccggaaaaacccccaaaacaaccccagggtttttttcatttttgcccccc
LVRM1_0013_F12.b : AGATGGTCGCCAGGATGGAGAACTTCTGCAACAGCGGCTCCACGGACACGTCTCCCGTCA


20070806C-003702 : TCAATGCTGTCACCCACGCCCTGACCTCCACCACCCCCTACACTCGCTACCACCCCATGG
                   ---------+---------+---------+---------+---------+---------+ 1177
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : aaggtttccccccccccaaccaaaaaagttctaaaaaaatgggaaagaaaaaaaactttt
LVRM1_0013_F12.b : TCAATGCTGTCACCCACGCCCTGACCTCCACCACCCCCTACACTCGCTACCACCCCATGG


20070806C-003702 : ACTA........................................................
                   ---------+---------+---------+---------+---------+---------+ 1181
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b : ttttaaaaaaaaaaaacaaaaaccccc                                
LVRM1_0013_F12.b : ACTActactggtgggtgcgaatgcaaatcatgacccagttgcctgggaccatctccgaca


20070806C-003702 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1181
LVRM1_0109_C11.b :                                                             
LVR01_0026_B11.b :                                                             
LVRM1_0013_F12.b : aga