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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20070806C-003964

Length: 911

Sequence:  [FASTA format sequence]
GCAGCGTCAT GGCGCGCTTC TTCCGCGCGG GCCCGGGCTT ACCCTTCCGA GAGGTGCTCT
CGCGGGCAGT GTGGGGTCGT GCCGACAATG GCGGCCTCAG CCCGAAGGTC GGAACCGGAG
ACGCAGGGTC CCTTACAAAG CGTGAGCCGT TCCTCTCCAA GAGTGAGTGG CAAAAGAAGC
TGACTCCAGA GCAATTCCAC GTCACGAGAG AAAAAGGGAC AGAACCGCCT TTCAGTGGGA
CCTACCTGAA TAACAAGGAA GCAGGAATGT ATCACTGTGT GTGCTGTGAC AGCCCACTCT
TCAGCTCTGA GAAAAAGTAC TGCTCTGGCA CTGGATGGCC TTCATTTTCT GAGGCTCACG
GCACATCTGG CTCTGATGAG AGTGACACAG GGATCCTGAG ACGTGTGGAC ACCTCGCTGG
GAACAGCTCG CACGGAGGTT GTCTGCAAGC AGTGCGAAGC TCACCTTGGC CATGTGTTTC
CTGATGGACC TGGGCCTACA GGTCAGAGGT TTTGCATCAA CAGTGTGGCA CTCAAGTTCA
AACCAAGGAA ACACTGACCA TCGCCAGGAG TCCCTTTCTC TTCCACCCTC TCATTTCCAA
ACTCGATTTT CATAATTTAT GCAAATGACT AGTTTTATTA ATGACCAAAC TAGGCTAAGC
TTGCTGGCAT ACCTTCTCTA ATTCATTACC TGGAGTCAGC TCCACCCTGG CTCTGGCTCT
GGCTAGAATT TCACGGAATG ACAGAGGGGC AGTCCTTTCC CTTAATCAAC ATCTGTGGGC
TTTGCCAGGA CCAGAGGGCA TGACTCTTTG GGGACATTAG GAGGCTGATG GATAAGCCAA
AGAACTCCTA TAAAACTATG CTGAATTTTC CATTGCAGTC AAGTGGTTCA CAGACATGTA
TAGGTGAGAG G

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		MSRB2	"methionine-R-sulfoxide reductase B2, mitochondrial precursor [Homo sapiens]. "	299	3e-81	O
		MSRB3	methionine-R-sulfoxide reductase B3 isoform 1 [Homo sapiens].	144	8e-35	O
		MSRB3	methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].	142	3e-34	O
		MSRB3	methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].	142	3e-34	O
		MSRB3	methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].	142	3e-34	O
		SEPX1	methionine-R-sulfoxide reductase B1 [Homo sapiens].	60.1	3e-09	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Msrb2	"methionine-R-sulfoxide reductase B2, mitochondrial precursor [Mus musculus]. "	273	1e-73	O
		Msrb3	"methionine-R-sulfoxide reductase B3, mitochondrial precursor [Mus musculus]. "	141	6e-34	O
		Sepx1	methionine-R-sulfoxide reductase B1 [Mus musculus].	53.5	2e-07	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC608357	PREDICTED: similar to Methionine-R-sulfoxide reductase B [Canis familiaris].	282	4e-76	O
		LOC608386	PREDICTED: similar to methionine-R-sulfoxide reductase B3 [Canis familiaris].	141	1e-33
		SEPX1	"selenoprotein X, 1 [Canis lupus familiaris]. "	59.7	4e-09	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		MSRB2	PREDICTED: methionine sulfoxide reductase B2-like [Bos taurus].	313	2e-85	O
		MSRB2	PREDICTED: methionine sulfoxide reductase B2-like [Bos taurus].	313	2e-85	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3-like isoform 4 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3-like isoform 3 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3-like isoform 2 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3-like isoform 1 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3 isoform 3 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3 isoform 2 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3 isoform 4 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3 isoform 1 [Bos taurus].	142	5e-34	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100520263	"PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like [Sus scrofa]. "	389	e-108	O
		LOC100511693	"PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like [Sus scrofa]. "	64.3	8e-11	O
		LOC100512103	"PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like [Sus scrofa]. "	62.8	2e-10	O
		SEPX1	methionine-R-sulfoxide reductase B1 [Sus scrofa].	56.6	2e-08	O

Alignment:      TOP

20070806C-003964 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVR01_0027_F12.b : ggggcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0043_A11.b :        tttttggctagtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20070806C-003964 : .............................GCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
                   ---------+---------+---------+---------+---------+---------+ 31
OVR01_0027_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
TCH01_0043_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG


20070806C-003964 : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
                   ---------+---------+---------+---------+---------+---------+ 91
OVR01_0027_F12.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
TCH01_0043_A11.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG


20070806C-003964 : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
                   ---------+---------+---------+---------+---------+---------+ 151
OVR01_0027_F12.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
TCH01_0043_A11.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT


20070806C-003964 : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA
                   ---------+---------+---------+---------+---------+---------+ 211
OVR01_0027_F12.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCGATTCCACGTCACGAGAGA
TCH01_0043_A11.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA


20070806C-003964 : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
                   ---------+---------+---------+---------+---------+---------+ 271
OVR01_0027_F12.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
TCH01_0043_A11.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA


20070806C-003964 : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
                   ---------+---------+---------+---------+---------+---------+ 331
OVR01_0027_F12.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
TCH01_0043_A11.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC


20070806C-003964 : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
                   ---------+---------+---------+---------+---------+---------+ 391
OVR01_0027_F12.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
TCH01_0043_A11.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG


20070806C-003964 : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
                   ---------+---------+---------+---------+---------+---------+ 451
OVR01_0027_F12.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
TCH01_0043_A11.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA


20070806C-003964 : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
                   ---------+---------+---------+---------+---------+---------+ 511
OVR01_0027_F12.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
TCH01_0043_A11.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT


20070806C-003964 : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
                   ---------+---------+---------+---------+---------+---------+ 571
OVR01_0027_F12.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
TCH01_0043_A11.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT


20070806C-003964 : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
                   ---------+---------+---------+---------+---------+---------+ 631
OVR01_0027_F12.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
TCH01_0043_A11.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA


20070806C-003964 : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
                   ---------+---------+---------+---------+---------+---------+ 691
OVR01_0027_F12.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
TCH01_0043_A11.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT


20070806C-003964 : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGGCTAGAATTTCACGGAATGACAGAGGGGCA
                   ---------+---------+---------+---------+---------+---------+ 751
OVR01_0027_F12.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA
TCH01_0043_A11.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGGCTAGAATTTCACGGAATGACAGAGGGGCA


20070806C-003964 : GTCCTTTCCCTTAA*TCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTC*T
                   ---------+---------+---------+---------+---------+---------+ 807
OVR01_0027_F12.b : GTCCTTTCCCTTAAATCAACATCTGTGGGCTTTTGCCCAGGACCAGAGGGCATGACTCTT
TCH01_0043_A11.b : GTCCTTTCCCTTAA*TCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTC*T


20070806C-003964 : TTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
                   ---------+---------+---------+---------+---------+---------+ 867
OVR01_0027_F12.b : TTGGGGACATTANGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
TCH01_0043_A11.b : TTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT


20070806C-003964 : TTCCATTGCAGTCAAGTGGTTCACAGACATGTATAGGTGAGAGG................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b : TTCCATTGCAgtcaagtgtttcacaaacttgtataggtgagaaggtcaaacgaaaagagg
TCH01_0043_A11.b : TTCCATTGCAGTCAAGTGGTTCACAGACATGTATAGGTGAGAGGgtcaacgagaagaggg


20070806C-003964 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b : aatgaaaatacgggatgaagattatccacagtcccagtggtgaaaaaggcaattaaggag
TCH01_0043_A11.b : atgaaaatacgggatgaggatgatccaccgtcccagtgtggaaaagcaataaggaggcag


20070806C-003964 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b : ggagggtttggggaccaaacttgcgttttgggggagggcccattgtggggggatcccccg
TCH01_0043_A11.b : gtttgtggaccacctgcttttgggaaggccatggtggggatcccggggaagcaggaaatt


20070806C-003964 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b : gggaaatgccggggaaaattttttttccccaaaaac                       
TCH01_0043_A11.b : tttccaaaacctttaacggtcttaaaattcaattccacctctctaccgcaactattttaa


20070806C-003964 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b :                                                             
TCH01_0043_A11.b : ggggcgttgtaaaccttaggaaaagaaaacaagggctcaaaagttacctttaaaggtcaa


20070806C-003964 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b :                                                             
TCH01_0043_A11.b : taaa