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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20070806C-007549

Length: 983

Sequence [FASTA format sequence]
AGGCAGAAGA AGACAGACAG GCCAACAGGT TCAGACAGCC TGCTCGCCGC TCCACGCCCC
CCACTGCTCT CCTGCCCCAG CGCCGAGATG GATACCCCTG TTAGGGACCT AGACAAGTTC
ATCGAAGACC ACCTCCTGCC AAACACATGT TTCCGAACGC AGGTCAAGGA AGCCATCGAC
ATCGTCTGCG GTTTCCTGAA GGAGAGGTGC TTCCAGGGGA CCGCCGACCC TGTTCGCGTC
TCCAAAGTTG TGAAGGGTGG CTCCTCGGGC AAAGGCACGA CCCTCAGGGG CCGATCAGAT
GCTGACCTCG TCGTCTTCCT CACCAAGCTC ACAAGTTTTG AGGATCAGCT TCAGCTCCGA
GAAGAATTCA TCCAGGAAAT TCGGAGACAG CTGGAAGCCT GTCAAAAAGA ACAAAAGTTT
AAAGTGACGT TTGAGGTCCA GACTCCACGA CAGGAGAACC CCCGTGCCCT CAGCTTCGTG
CTCAGCTCCC CCCAGCTCCA GCAGGAGGTG GAGTTTGATG TCCTGCCCGC CTTTGATGCC
CTGGGTCAGT GGACCCCGGG CTACAAACCC AACCCGGAAA TCTACGTCCA GCTTATCAAA
GAGTGCAAGT CCCTAGGGAA AGAGGGCGAG TTTTCCACCT GCTTCACGGA GCTGCAGCGA
GACTTCCTGA GGAACCGACC AACCAAGCTG AAGAGCCTCA TCCGCCTTGT CAAGCACTGG
TACCAGACGT GTAAGAAGCC TCATGGAAAT AAACTGCCCC CACAGTATGC CCTGGAGCTC
CTGACAGTCT ATGCATGGGA GCAAGGAAGC GGGAAAACAG ATTTTAGCAC AGCTCAGGGA
TTTCAGACTG TTTTGGAATT AGTCCTAAAG CATAAGAAGC TTTGCATCTT CTGGGAAGCA
TATTATAACT TTAAAAACCC TGTCGTTGGA CGATATCTGA CTGAGCAACT CAAGAAACCC
AGGCCTGTGA TTCTGGACCC GGC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinOAS12'-5'-oligoadenylate synthase 1 isoform 3 [Homo sapiens]. 434e-122O
Contig/Assembly ProteinOAS12'-5'-oligoadenylate synthase 1 isoform 1 [Homo sapiens]. 434e-122O
Contig/Assembly ProteinOAS12'-5'-oligoadenylate synthase 1 isoform 2 [Homo sapiens]. 434e-122O
Contig/Assembly ProteinOAS32'-5'-oligoadenylate synthase 3 [Homo sapiens]. 3186e-87
Contig/Assembly ProteinOAS22'-5'-oligoadenylate synthase 2 isoform 1 [Homo sapiens]. 2887e-78
Contig/Assembly ProteinOAS22'-5'-oligoadenylate synthase 2 isoform 2 [Homo sapiens]. 2887e-78
Contig/Assembly ProteinOASL59 kDa 2'-5'-oligoadenylate synthase-like protein isoform a [Homo sapiens]. 1985e-51O
Contig/Assembly ProteinOASL59 kDa 2'-5'-oligoadenylate synthase-like protein isoform b [Homo sapiens]. 1256e-29O
Contig/Assembly ProteinOAS22'-5'-oligoadenylate synthase 2 isoform 3 [Homo sapiens]. 58.97e-09O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinOas1g2'-5' oligoadenylate synthetase 1G [Mus musculus]. 377e-105O
Contig/Assembly ProteinOas1a2'-5'-oligoadenylate synthase 1A [Mus musculus]. 375e-104O
Contig/Assembly ProteinOas1f2'-5'oligoadenylate synthetase 1F [Mus musculus]. 3262e-89O
Contig/Assembly ProteinOas32'-5'-oligoadenylate synthase 3 [Mus musculus]. 3055e-83
Contig/Assembly ProteinOas1b2'-5'-oligoadenylate synthase 1B [Mus musculus]. 3009e-82O
Contig/Assembly ProteinOas1c2'-5' oligoadenylate synthetase 1C [Mus musculus]. 2962e-80O
Contig/Assembly ProteinOas22'-5' oligoadenylate synthetase 2 [Mus musculus]. 2914e-79
Contig/Assembly ProteinOas1e2'-5' oligoadenylate synthetase 1E [Mus musculus]. 2902e-78O
Contig/Assembly ProteinOas1d2'-5' oligoadenylate synthetase 1D [Mus musculus]. 2878e-78O
Contig/Assembly ProteinOas1h2'-5' oligoadenylate synthetase 1H isoform 1 [Mus musculus]. 2755e-74O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinOAS12'-5'-oligoadenylate synthase 1 [Canis lupus familiaris]. 416e-116O
Contig/Assembly ProteinOAS32'-5'-oligoadenylate synthase 3 [Canis lupus familiaris]. 3024e-82
Contig/Assembly ProteinOAS22'-5'-oligoadenylate synthase 2 [Canis lupus familiaris]. 2862e-77
Contig/Assembly ProteinOASL59 kDa 2'-5'-oligoadenylate synthase-like protein [Canis lupus familiaris]. 2263e-59O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinOAS1"2',5'-oligoadenylate synthetase 1 [Bos taurus]. "422e-118O
Contig/Assembly ProteinOAS1"2',5'-oligoadenylate synthetase 1, 40/46kDa [Bos taurus]. "418e-117O
Contig/Assembly ProteinOAS1"2',5'-oligoadenylate synthetase 1 [Bos taurus]. "381e-106O
Contig/Assembly ProteinOAS22'-5'-oligoadenylate synthase 2 [Bos taurus]. 2732e-73
Contig/Assembly ProteinOASL59 kDa 2'-5'-oligoadenylate synthase-like protein [Bos taurus]. 1819e-46O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinOAS12'-5'-oligoadenylate synthase 1 [Sus scrofa]. 540e-154O
Contig/Assembly ProteinOAS22'-5'-oligoadenylate synthase 2 [Sus scrofa]. 2907e-79
Contig/Assembly ProteinLOC100525838PREDICTED: 2'-5'-oligoadenylate synthase 1-like [Sus scrofa]. 2053e-53
Contig/Assembly ProteinOASL59 kDa 2'-5'-oligoadenylate synthase-like protein [Sus scrofa]. 1744e-44O


Assembly Members: 3      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
AMP010025C08AMP01_0025_C08.bBW956854 AK230683
TES010075B06TES01_0075_B06.bCJ034804 
THY010057B01THY01_0057_B01.bBP160622 

  

Alignment:      TOP

20070806C-007549 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
AMP01_0025_C08.b : attttaccgaccctaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0057_B01.b :
TES01_0075_B06.b :
20070806C-007549 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
AMP01_0025_C08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0057_B01.b : tttttggatgaacxxxxxxxxxxxxxxxxxxxxxxxxx
TES01_0075_B06.b :
20070806C-007549 : ...........................................AGGCAGAAGAAGACAGA
---------+---------+---------+---------+---------+---------+ 17
AMP01_0025_C08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGCAGAAGAAGACAGA
THY01_0057_B01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAGAAGACAGA
TES01_0075_B06.b : nttggcgttggctctgggaatctacagcagcccaactcaggcagaagaagacaga
20070806C-007549 : CAGGCCAACAGGTTCAGACAGCCTGCTCGCCGCTCCACGCCCCCCACTGCTCTCCTGCCC
---------+---------+---------+---------+---------+---------+ 77
AMP01_0025_C08.b : CAGGCCAACAGGTTCAGACAGCCTGCTCGCCGCTCCACGCCCCCCACTGCTCTCCTGCCC
THY01_0057_B01.b : CAGGCCAACAGGTTCAGACAGCCTGCTCGCCGCTCCACGCCCCCCACTGCTCTCCTGCCC
TES01_0075_B06.b : caggccaacaggttcagatagcctgctcgccgctccacgccccccactgctctcctgccc
20070806C-007549 : CAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
---------+---------+---------+---------+---------+---------+ 137
AMP01_0025_C08.b : CAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
THY01_0057_B01.b : CAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
TES01_0075_B06.b : cagcgccgagatggATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
20070806C-007549 : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
---------+---------+---------+---------+---------+---------+ 197
AMP01_0025_C08.b : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
THY01_0057_B01.b : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
TES01_0075_B06.b : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
20070806C-007549 : GAAGGAGAGGTGCTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
---------+---------+---------+---------+---------+---------+ 257
AMP01_0025_C08.b : GAAGGAGAGGTGCTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
THY01_0057_B01.b : GAAGGAGAGGTGCTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
TES01_0075_B06.b : GAAGGAGAGGTACTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
20070806C-007549 : TGGCTCCTCGGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
---------+---------+---------+---------+---------+---------+ 317
AMP01_0025_C08.b : TGGCTCCTCGGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
THY01_0057_B01.b : TGGCTCCTCGGGCAAGGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
TES01_0075_B06.b : TGGCTCCTCAGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
20070806C-007549 : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
---------+---------+---------+---------+---------+---------+ 377
AMP01_0025_C08.b : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
THY01_0057_B01.b : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
TES01_0075_B06.b : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
20070806C-007549 : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
---------+---------+---------+---------+---------+---------+ 437
AMP01_0025_C08.b : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
THY01_0057_B01.b : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
TES01_0075_B06.b : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
20070806C-007549 : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
---------+---------+---------+---------+---------+---------+ 497
AMP01_0025_C08.b : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
THY01_0057_B01.b : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
TES01_0075_B06.b : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
20070806C-007549 : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
---------+---------+---------+---------+---------+---------+ 557
AMP01_0025_C08.b : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
THY01_0057_B01.b : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
TES01_0075_B06.b : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
20070806C-007549 : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
---------+---------+---------+---------+---------+---------+ 617
AMP01_0025_C08.b : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
THY01_0057_B01.b : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
TES01_0075_B06.b : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
20070806C-007549 : GAAAGAGGGCGAGTTTTCCACCTGCT*TCACGGAGCTGCAGCGAGACTTCCTGAGGAACC
---------+---------+---------+---------+---------+---------+ 676
AMP01_0025_C08.b : GAAAGAGGGCGAGTTTTCCACCTGCT*TCACGGAGCTGCAGCGAGACTTCCCGAGGAACC
THY01_0057_B01.b : GAAAGAGGGCGAGTTTTCCACCTGCT*TCACGGAGCTGCAGCGAGACTTCCTGAGGAACC
TES01_0075_B06.b : GAAAGAGGGCGAGTTTTCCACCTGCTTTCACG*AGCTGCAGCGAGACTTCCTGAGGAACC
20070806C-007549 : GACCAACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGA
---------+---------+---------+---------+---------+---------+ 736
AMP01_0025_C08.b : GACCCACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGA
THY01_0057_B01.b : GACCAACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGA
TES01_0075_B06.b : GACCAACCA*GCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGA
20070806C-007549 : AGCCTCATGGAAATAAACTGCCCCCACAGTATGCCCT*GGAGCTCCTGACAGTCTATGCA
---------+---------+---------+---------+---------+---------+ 795
AMP01_0025_C08.b : AGCCTCATGGAAATAAACTGCCCCCACAGTATGCCCT*GNAGCTCCTGACAGTCTATGCA
THY01_0057_B01.b : AGCCTCATGGAAATAAACTGCCCCCACAGTATGCCCT*GGAGCTCCTGACAGTCTATGCA
TES01_0075_B06.b : AGC*TCATGGAAATAAACTGCCCCCACAGTATGCCCTTGGAGCTCCTGAAAGTCTTTGCT
20070806C-007549 : TGGGAGCAAGGAAGCGGGAAAACAGATTTTAGCACAGCTCAGGGATTTCAGACTGTTTTG
---------+---------+---------+---------+---------+---------+ 855
AMP01_0025_C08.b : TGGGAACAAGGAAGCGGGGAAACAGATTTTAGCACAcctcagggatttcaaactgttttt
THY01_0057_B01.b : TGGGAGCAAGGAAGCGGGAAAACAGATTTTAGCACAGCTCAGGGATTTCAGACTGTTTTG
TES01_0075_B06.b : TGGGAACAAGGAACCGGGAAAACcgaatttaccccgctccaggaattccaactgttttgg
20070806C-007549 : GAATTAGTCCTAAAGCATAAGAAGCTTTGCATCTTCTGGGAAGCATATTATAACTTTAAA
---------+---------+---------+---------+---------+---------+ 915
AMP01_0025_C08.b : gaatttattcctaaagcataagaagcttggcatcctctggaagcctattaaaacttaaaa
THY01_0057_B01.b : GAATTAGTCCTAAAGCATAAGAAGCTTTGCATCTTCTGGGAAGCATATTATAACTTTAAA
TES01_0075_B06.b : aatatccctaaaccataaaaagtttttcatcttccgggaaaccttttttaacttttaaaa
20070806C-007549 : AACCCTGTCGTTGGACGATATCTGACTGAGCAACTCAAGAAACCCAGGCCTGTGATTCTG
---------+---------+---------+---------+---------+---------+ 975
AMP01_0025_C08.b : ccccgtccttggacgaaatctactgaaccactcaaaaacccagcctgggatttggaaccg
THY01_0057_B01.b : AACCCTGTCGTTGGACGATATCTGACTGAGCAACTCAAGAAACCCAGGCCTGTGATTCTG
TES01_0075_B06.b : acccctgtccttggaaaattttcgcctgaccacccccaaaaacccgggcccgggaatttg
20070806C-007549 : GACCCGGC....................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b : ctgaccctaagcaacttttgtgggggaaacaatacactgcaccccctgtaaaagggccca
THY01_0057_B01.b : GACCCGGCtgaccctacaggcaacgttggtgggtggaaacccatacagctgggcagcagc
TES01_0075_B06.b : ggacccgggtaacccttaagggaattgtgtgggggggaaaaaaaaaaaattgggaaccct
20070806C-007549 : ............................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b : atcggcgaatacccgctttttaaagaacaggtcccggggaatcgaagggtccccaagcca
THY01_0057_B01.b : tggtagaaggggcactaatcttggctgaattatccggtgcttttttaaatggaaaccggg
TES01_0075_B06.b : ttggaaaaagggcccacactcgggcgaaaaattcccggcttttttaaaaaggaaagagtc
20070806C-007549 : ............................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b : agcccccaat
THY01_0057_B01.b : tccccgggtgggaatcccgga
TES01_0075_B06.b : ccccgggggaacccggaaaggggtcccccgaggaaaaagccccctcccggaggggaaaat
20070806C-007549 : ............................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b :
THY01_0057_B01.b :
TES01_0075_B06.b : attttatgggcccaaaaacatcttaaaaagaggatcccgtgaacacccgggaaaaccccc
20070806C-007549 : ............................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b :
THY01_0057_B01.b :
TES01_0075_B06.b : ccttcttatgggggggggggcggaaccctctctcctaagggcccattttgtgttacacaa
20070806C-007549 : ............................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b :
THY01_0057_B01.b :
TES01_0075_B06.b : acctcacacaaagtggttgtttcccctctgtgtgttatttggn