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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20070806C-008203

Length: 1,059

Sequence [FASTA format sequence]
GCAGCGGGCC ACAAATCTGG CAAAAGAGAG CTAGTGGTAA AGGGAGCTGG TGAAGGGGTG
GTGTAAGGGG TAGAGGGCCG GGCACGGCCG GTTGACAGAG CGACTCTGAT CGCTCTCCGC
ACTTCCGCTC TGCTGGGTCC CACAACTCCT CGCTACGCGA GGCTAGGGCG TTTGTTAGAC
AGAGTCAGTT GTGGGGTTCA GAGGGTCAGC AGTCAGTCCA GAGATTCAGT ACTTGTCACT
TTCGGTACTC AGGGAGTTGG TAGGTTCAGT GTTTGGGATG CCAAAGAAAT CCGTCTTTTG
ATTCAGAGTT CATCATCTAA AGGTTTAGGT AGCAATCGAC ATCATGCTGA AAGCTGTGAT
CCTGATTGGA GGCCCCCAAA AGGGGACTCG CTTCAGGCCC CTGTCTTTTG AGGTGCCCAA
ACCCCTGTTT CCTGTGGCGG GGGTCCCTAT GATTCAGCAC CACATTGAGG CTTGTGCCCA
GGTCCCTGGG ATGCAGGAGA TCCTGCTCAT TGGCTTCTAC CAACCTGATG AGCCCCTTAC
CCGGTTCCTA GAAGCCGCGC AGCAGGAGTT TAACCTTCCA ATCAGGTACC TGCAGGAATT
TGCCCCCCTG GGCACAGGTG GTGGTCTCTA CCATTTCCGG GACCAGATCC TGGCTGGAGG
CCCCGAGGCC TTCTTTGTGC TCAACGCTGA TGTCTGCTCC GACTTCCCCT TGAGCGCCAT
GCTGGATGCC CACAGACACC GGCCTCACCC CTTCTTGCTC CTTGGCACCA CGGCTAACAG
GACACAATCC CTCAACTATG GCTGCATCGT AGAGAATCCA CAAACGCATG AGGTCCTGCA
CTATGTGGAG AAACCCAGCA CGTTTGTCAG TGACATCATC AACTGTGGCA TCTACCTCTT
TTCCCCAGAG CCCTGAAGCC CCTCGGGAAA GTCTCCAGCG TAATCAGCAG GATGGGCAAC
TGGAGGACTC TTCAGTCTTG TGGCCAGGGG CAGGGACATC CGCCTGGAGC AGGATGTGTT
CGCAGCCCTG GCTGGGCAGG GCCAGATCTA CGTGCACCT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGMPPAmannose-1-phosphate guanyltransferase alpha [Homo sapiens]. 392e-109O
Contig/Assembly ProteinGMPPAmannose-1-phosphate guanyltransferase alpha [Homo sapiens]. 392e-109O
Contig/Assembly ProteinGMPPBmannose-1-phosphate guanyltransferase beta isoform 1 [Homo sapiens]. 1142e-25O
Contig/Assembly ProteinGMPPBmannose-1-phosphate guanyltransferase beta isoform 2 [Homo sapiens]. 1142e-25O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGmppamannose-1-phosphate guanyltransferase alpha [Mus musculus]. 390e-109O
Contig/Assembly ProteinGmppbmannose-1-phosphate guanyltransferase beta [Mus musculus]. 1142e-25O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC608751PREDICTED: similar to GDP-mannose pyrophosphorylase A isoform 2 [Canis familiaris]. 393e-109O
Contig/Assembly ProteinLOC608751PREDICTED: similar to GDP-mannose pyrophosphorylase A isoform 5 [Canis familiaris]. 392e-109O
Contig/Assembly ProteinLOC608751PREDICTED: similar to GDP-mannose pyrophosphorylase A isoform 4 [Canis familiaris]. 392e-109O
Contig/Assembly ProteinLOC608751PREDICTED: similar to GDP-mannose pyrophosphorylase A isoform 3 [Canis familiaris]. 392e-109O
Contig/Assembly ProteinLOC608751PREDICTED: similar to GDP-mannose pyrophosphorylase A isoform 1 [Canis familiaris]. 392e-109O
Contig/Assembly ProteinLOC484766PREDICTED: similar to GDP-mannose pyrophosphorylase B isoform 2 isoform 2 [Canis familiaris]. 1141e-25O
Contig/Assembly ProteinLOC484766PREDICTED: similar to GDP-mannose pyrophosphorylase B isoform 2 isoform 1 [Canis familiaris]. 1141e-25O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGMPPAPREDICTED: GDP-mannose pyrophosphorylase A [Bos taurus]. 402e-112O
Contig/Assembly ProteinGMPPAPREDICTED: GDP-mannose pyrophosphorylase A isoform 2 [Bos taurus]. 402e-112O
Contig/Assembly ProteinAMIGO3mannose-1-phosphate guanyltransferase beta [Bos taurus]. 1157e-26O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100513376PREDICTED: mannose-1-phosphate guanyltransferase beta-like [Sus scrofa]. 1162e-26O


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
ITT010079A04ITT01_0079_A04.bBW982984 
PBL010023F08PBL01_0023_F08.bBP156106 
SKNB10017G01SKNB1_0017_G01.bDB800956 
UTR010010C02UTR01_0010_C02.bBP170474 AK239909

  

Alignment:      TOP

20070806C-008203 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
UTR01_0010_C02.b : ttttttttgctgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PBL01_0023_F08.b : nggatgaacaxxxxxxxxxxxxxxxx
SKNB1_0017_G01.b :
ITT01_0079_A04.b :
20070806C-008203 : ............................GCAGCGGGCCACA*AATCTGGCAAAAGAGAGC
---------+---------+---------+---------+---------+---------+ 31
UTR01_0010_C02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGGGCCACA*AATCTGGCAAAAGAGAGC
PBL01_0023_F08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGGGCCACACAATCTGGCAAAAGAGAGC
SKNB1_0017_G01.b : ngggtttnnnnnnngatgcgttggctaggaacaAATCTGGCAA*AGAGAGC
ITT01_0079_A04.b : nnnggatgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGC
20070806C-008203 : TAGTGGTAAAGGGAGCTGGTGAAGGGGTGGTGTAAGGGGTAGAGGGCCGGGCACGGCCGG
---------+---------+---------+---------+---------+---------+ 91
UTR01_0010_C02.b : TAGTGGTAAAGGGAGCTGGTGAAGGGGTGGTGTAAGGGGTAGAGGGCCGGGCACGGCCGG
PBL01_0023_F08.b : TAGTGGTAAAGGGAGCTGGTGAAGGGGTGGTGTAAGGGGTAGAGGGCCGGGCACGGCCGG
SKNB1_0017_G01.b : TAGTGGTAAAGGGAGCTGGTGAAGGGGTGGTGTAAGGGGTAGAGGGCCGGGCACGGCCGG
ITT01_0079_A04.b : TAGTGGTAAAGGGAGCTGGTGAAGGGGTGGTGTAAGGGGTAGAGGGCCGGGCACGGCCGG
20070806C-008203 : TTGACAGAGCGACTCTGATCGCTCTCCGCACTTCCGCTCTGCTGGGTCCCACAACTCCTC
---------+---------+---------+---------+---------+---------+ 151
UTR01_0010_C02.b : TTGACAGAGCGACTCTGATCGCTCTCCGCACTTCCGCTCTGCTGGGTCCCACAACTCCTC
PBL01_0023_F08.b : TTGACAGAGCGACTCTGATCGCTCTCCGCACTTCCGCTCTGCTGGGTCCCACAACTCCTC
SKNB1_0017_G01.b : TTGACAGAGCGACTCTGATCGCTCTCCGCACTTCCGCTCTGCTGGGTCCCACAACTCCTC
ITT01_0079_A04.b : TTGACAGAGCGACTCTGATCGCTCTCCGCACTTCCGCTCTGCTGGGTCCCACAACTCCTC
20070806C-008203 : GCTACGCGAGGCTAGGGCGTTTGTTAGACAGAGTCAGTTGTGGGGTTCAGAGGGTCAGCA
---------+---------+---------+---------+---------+---------+ 211
UTR01_0010_C02.b : GCTACGCGAGGCTAGGGCGTTTGTTAGACAGAGTCAGTTGTGGGGTTCAGAGGGTCAGCA
PBL01_0023_F08.b : GCTACGCGAGGCTAGGGCGTTTGTTAGACAGAGTCAGTTGTGGGGTTCAGAGGGTCAGCA
SKNB1_0017_G01.b : GCTACGCGAGGCTAGGGCGTTTGTTAGACAGAGTCAGTTGTGGGGTTCAGAGGGTCAGCA
ITT01_0079_A04.b : GCTACGCGAGGCTAGGGCGTTTGTTAGACAGAGTCAGTTGTGGGGTTCAGAGGGTCAGCA
20070806C-008203 : GTCAGTCCAGAGATTCAGTACTTGTCACTTTCGGTACTCAGGGAGTTGGTAGGTTCAGTG
---------+---------+---------+---------+---------+---------+ 271
UTR01_0010_C02.b : GTCAGTCCAGAGATTCAGTACTTGTCACTTTCGGTACTCAGGGAGTTGGTAGGTTCAGTG
PBL01_0023_F08.b : GTCAGTCCAGAGATTCAGTACTTGTCACTTTCGGTACTCAGGGAGTTGGTAGGTTCAGTG
SKNB1_0017_G01.b : GTCAGTCCAGAGATTCAGTACTTGTCACTTTCGGTACTCAGGGAGTTGGTAGGTTCAGTG
ITT01_0079_A04.b : GTCAGTCCAGAGATTCAGTACTTGTCACTTTCGGTACTCAGGGAGTTGGTAGGTTCAGTG
20070806C-008203 : TTTGGGATGCCAAAGAAATCCGTCTTTTGATTCAGAGTTCATCATCTAAAGGTTTAGGTA
---------+---------+---------+---------+---------+---------+ 331
UTR01_0010_C02.b : TTTGGGATGCCAAAGAAATCCGTCTTTTGATTCACAGTTCATCATCTAAAGGTTTAGGTA
PBL01_0023_F08.b : TTTGGGATGCCAAAGAAATCCGTCTTTTGATTCAGAGTTCATCATCTAAAGGTTTAGGTA
SKNB1_0017_G01.b : TTTGGGATACCAAAGAAATCCGTCTTTTGATTCAGAGTTCATCATCTAAAGGTTTAGGTA
ITT01_0079_A04.b : TTTGGGATGCCAAAGAAATCCGTCTTTTGATTCAGAGTTCATCATCTAAAGGTTTAGGTA
20070806C-008203 : GCAATCGACATCATGCTGAAAGCTGTGATCCTGATTGGAGGCCCCCAAAAGGGGACTCGC
---------+---------+---------+---------+---------+---------+ 391
UTR01_0010_C02.b : GCAATCGACATCATGCTGAAAGCTGTGATCCTGATTGGAGGCCCCCAAAAGGGGACTCGC
PBL01_0023_F08.b : GCAATCGACATCATGCTGAAAGCTGTGATCCTGATTGGAGGCCCCCAAAAGGGAACTCGC
SKNB1_0017_G01.b : GCAATCGACATCATGCTGAAAGCTGTGATCCTGATTGGAGGCCCCCAAAAGGGGACTCGC
ITT01_0079_A04.b : GCAATCGACATCATGCTGAAAGCTGTGATCCTGATTGGAGGCCCCCAAAAGGGGACTCGC
20070806C-008203 : TTCAGGCCCCTGTCTTTTGAGGTGCCCAAACCCCTGTTTCCTGTGGCGGGGGTCCCTATG
---------+---------+---------+---------+---------+---------+ 451
UTR01_0010_C02.b : TTCAGGCCCCTGTCTTTTGAGGTGCCCAAACCCCTGTTTCCTGTGGCGGGGGTCCCTATG
PBL01_0023_F08.b : TTCAGGCCCCTGTCTTTTGAGGTGCCCAAACCCCTGTTTCCTGTGGCGGGGGTCCCTATG
SKNB1_0017_G01.b : TTCAGGCCCCTGTCTTTTGAGGTGCCCAAACCCCTGTCTCCTGTGGCGGGGGTCCCTATG
ITT01_0079_A04.b : TTCAGGCCCCTGTCTTTTGAGGTGCCCAAACCCCTGTTTCCTGTGGCGGGGGTCCCTATG
20070806C-008203 : ATTCAGCACCACATTGAGGCTTGTGCCCAGGTCCCTGGGATGCAGGAGATCCTGCTCATT
---------+---------+---------+---------+---------+---------+ 511
UTR01_0010_C02.b : ATTCAGCACCACATTGAGGCTTGTGCCCAGGTCCCTGGGATGCAGGAGATCCTGCTCATT
PBL01_0023_F08.b : ATTCAGCACCACATTGAGGCTTGTGCCCAGGTCCCTGGGATGCAGGAGATCCTGCTCATT
SKNB1_0017_G01.b : ATTCAGCACCACATTGAGGCTTGTGCCCAGGTCCCTGGGATGCAGGAGATCCTGCTCATT
ITT01_0079_A04.b : ATTCAGCACCACATTGAGGCTTGTGCCCAGGTCCCTGGGATGCAGGAGATCCTGCTCATT
20070806C-008203 : GGCTTCTACCAACCTGATGAGCCCCTTACCCGGTTCCTAGAAGCCGCGCAGCAGGAGTTT
---------+---------+---------+---------+---------+---------+ 571
UTR01_0010_C02.b : GGCTTCTACCAACCTGATGAGCCCCTTACCCGGTTCCTAGAAGCCGCGCAGCAGGAGTTT
PBL01_0023_F08.b : GGCTTCTACCAACCTGATGAGCCCCTTACCCGGTTCCTAGAAGCCGCGCAGCAGGAGTTT
SKNB1_0017_G01.b : GGCTTCTACCAACCTGATGAGCCCCTTACCCGGTTCCTAGAAGCCGCGCAGCAGGAGTTT
ITT01_0079_A04.b : GGCTTCTACCAACCTGATGAGCCCCTTACCCGGTTCCTAGAAGCCGCGCAGCAGGAGTTT
20070806C-008203 : AACCTTCCAATCAGGTACCTGCAGGAATTTGCCCCCCTGGGCACAGGTGGTGGTCTCTAC
---------+---------+---------+---------+---------+---------+ 631
UTR01_0010_C02.b : AACCTTCCAATCAGGTACCTGCAGGAATTTGCCCCCCTGGGCACAGGTGGTGGTCTCTAC
PBL01_0023_F08.b : AACCTTCCAATCAGGTACCTGCAGGAATTTGCCCCCCTGGGCACAGGTGGTGGTCTCTAC
SKNB1_0017_G01.b : AACCTTCCAATCAGGTACCTGCAGGAATTTGCCCCCCTGGGCACAGGTGGTGGTCTCTAC
ITT01_0079_A04.b : AACCTTCCAATCAGGTACCTGCAGGAATTTGCCCCCCTGGGCACAGGTGGTGGTCTCTAC
20070806C-008203 : CATTTCCGGGACCAGATCCTGGCTGGAGGCCCCGAGGCCTTCTTTGTGCTCAACGCTGAT
---------+---------+---------+---------+---------+---------+ 691
UTR01_0010_C02.b : CATTTCCGGGACCAGATCCTGGCTGGAGGCCCCGAGGCCTTCTTTGTGCTCAACGCTGAT
PBL01_0023_F08.b : CATTTCCGGGACCAGATCCTGGCTGGAGGCCCCGAGGCCTTCTTTGTGCTCAAAGCTGAT
SKNB1_0017_G01.b : CATTTCCGGGACCAGATCCTGGCTGGAGGCCCCGAGGCCTTCTTTGTGTTCAACGCTGAT
ITT01_0079_A04.b : CATTTCCGGGACCAGATCCTGGCTGGAGGCCCCGAGGCCTTCTTTGTGCTCAACGCTGAT
20070806C-008203 : GTCTGCTCCGACTTCCCCTTGAGCGCCATGCTGGATGCCCACAGACACCGGCCTCACCCC
---------+---------+---------+---------+---------+---------+ 751
UTR01_0010_C02.b : GTCTGCTCCGACTTCCCCTTGAGCGCCATGCTGGATGCCCACAGACACCGGCCTCACCCC
PBL01_0023_F08.b : GTCTGCTCCGACTTCCCCTTGAGCGCCATGCTGGATGCCCACAGACACCGGCCTCACCCC
SKNB1_0017_G01.b : GTCTGCTCCGACTTCCCCTTGAGCGCCATGCTGGATGCCCACAGACACCGGCCTCACCCC
ITT01_0079_A04.b : GTCTGCTCCGACTTCCCCTTGAGCGCCATGCTGGATGCCCACAGACACCGGCCTCACCCC
20070806C-008203 : TTCTTGCTCCTTGGCACCACGGCTAACAGGACACAATCCCTCAACTATGGCTGCATCGTA
---------+---------+---------+---------+---------+---------+ 811
UTR01_0010_C02.b : TTCTTGCTCCTTGGCACCACGGCTAACAGGACACAATCCCTCAACTATGGCTGCATCGTA
PBL01_0023_F08.b : TTCTTGCTCCTTGGCACCACGGCTAACAGGACACAATCCCTCAACTACNGCTGCATCGTA
SKNB1_0017_G01.b : TTCTTGCTCCTTGGCACCACGGCTAACAGGACACAATCCCTCAACTATGGCTGCATCGTA
ITT01_0079_A04.b : TTCTTGCTCCTTGGCACCACGGCTAACAGGACANCATCCCTCAACTATGGCTGCATCGTA
20070806C-008203 : GAGAATCCACAAACGCATGAGGTCCTGCACTATGTGGAG*AAACCCAGCACGTTTGTCAG
---------+---------+---------+---------+---------+---------+ 870
UTR01_0010_C02.b :
PBL01_0023_F08.b : GAGAATCCCACAACGCATGANGTCCTGCACTATGTGGAGAAAACCCAGCACGT*TGTCAG
SKNB1_0017_G01.b : GAGAATCCACAAACGCATGAGGTCCTGCACTATGTGGAG*AAACCCAGCACGTTTGTCAG
ITT01_0079_A04.b : GAGAATCCACAAACGCATGAGGTCCTGCACTATGTGGAG*AAACCCCGCACGTTTGTCAG
20070806C-008203 : TGACATCATCAACTGTGGCATCTACCTCTTTTCCCCAG*AGCCCTGAAGCCCCTCGG*GA
---------+---------+---------+---------+---------+---------+ 928
UTR01_0010_C02.b :
PBL01_0023_F08.b : TGACATCATNCACTGTGGCATCTACCTCTTTTCCCCAG*AGCCCTGAAGCCCCTCGG*GG
SKNB1_0017_G01.b : TGACATCATCAACTGTGGCATCTACCTCTTTTCCCCAGAAGCCCTGAAGCCCCTCGGGGA
ITT01_0079_A04.b : TGACATCATCAACTGTGGCATCTACCTCTTTTCCCCGA*AGCCCTGAAGCCCCTCGG*GA
20070806C-008203 : AAGTCTCCAGCGTAATCAGCAGGATGGGCAACTGGAGGACTCTTCAGTCTTGTGGCCAGG
---------+---------+---------+---------+---------+---------+ 988
UTR01_0010_C02.b :
PBL01_0023_F08.b : AAGTCTTCAGCGTAATCAGCAGGATGGGC*ACTGGAGGACTCTTCAGT*CTGTGGCCAGG
SKNB1_0017_G01.b : AAGTCTCCAGCGTAATCAGCAGGATGGGCAACTGGAGGACTCTTCAGTCTTGTGGCCAGG
ITT01_0079_A04.b : AATCTTCCCGCGTAATCAGCAAGATGGGCAACTGGAGGACTCTTCGTC*TTGTGGCCGGG
20070806C-008203 : GGCAGGGAC*ATCCGCCTGGAGCAGGATGTGTTCGCAGCCCTGGCTGGGCAGGGCCAGAT
---------+---------+---------+---------+---------+---------+ 1047
UTR01_0010_C02.b :
PBL01_0023_F08.b : GGCAGGGAC*ATCCGCCTGnacagaatgtgtcccgccttggctgggcaggccgattactg
SKNB1_0017_G01.b : GGCAGGGACTATCCGCCTGGAGCAGGATGTGTTCGCAGCCCTGGCTGGGCAGGGCCAGAT
ITT01_0079_A04.b : GGagggaacctcgccctgaacagatgtttcccgcccgtgctggggcgggccaatttccgg
20070806C-008203 : CTACGTGCACCT................................................
---------+---------+---------+---------+---------+---------+ 1059
UTR01_0010_C02.b :
PBL01_0023_F08.b : cacctcccgatgtatctgagcagatcagttgcagctcacctctagccttcgcttattgac
SKNB1_0017_G01.b : CTACGTGCACCTtcacc
ITT01_0079_A04.b : caccccacgatggttttgggaccaaataagttggagggtaacctttaacctctgccctta
20070806C-008203 : ............................................................
---------+---------+---------+---------+---------+---------+ 1059
UTR01_0010_C02.b :
PBL01_0023_F08.b : cgtacgttcctcccaaaagctggcagccacccggggtcccgatcnggatgttactcccca
SKNB1_0017_G01.b :
ITT01_0079_A04.b : ttggaccgtaccgctccctcccaaaagccggccaaccccccggggggcccggattcggaa
20070806C-008203 : ............................................................
---------+---------+---------+---------+---------+---------+ 1059
UTR01_0010_C02.b :
PBL01_0023_F08.b : cgctagggcctcgctgtcggccaattcttcgaagggaatggcaggtgggtccaaaatccc
SKNB1_0017_G01.b :
ITT01_0079_A04.b : agtttatcccccaaggtaagggcccccggtgggggggcccaatttcccaaaaggggtctc
20070806C-008203 : ............................................................
---------+---------+---------+---------+---------+---------+ 1059
UTR01_0010_C02.b :
PBL01_0023_F08.b : tggccctcggacaggttcccatagggggacggggcgcccgagagccacctccaccgcccg
SKNB1_0017_G01.b :
ITT01_0079_A04.b : tggcaaagtgtcctccaaaaaatttccctggggcctgcagaaacacttgtccacaccaaa
20070806C-008203 : ............................................................
---------+---------+---------+---------+---------+---------+ 1059
UTR01_0010_C02.b :
PBL01_0023_F08.b : ggacctggggatccccccgggggctgggtttatttagagccacaaggggccccttctttc
SKNB1_0017_G01.b :
ITT01_0079_A04.b : tggggaccacgggggctggcccccgggacccccaatccctccacccggcagg
20070806C-008203 : ............................................................
---------+---------+---------+---------+---------+---------+ 1059
UTR01_0010_C02.b :
PBL01_0023_F08.b : ccnnnnctcttctctaacccttctacttnnnnnnnnnnnnnt
SKNB1_0017_G01.b :
ITT01_0079_A04.b :