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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20101001C-000863

Length: 945

Sequence:  [FASTA format sequence]
CAGCGCGATG GCGGCGGCTC CTTCAGGCCC CTGAAGGGGG ATTTAGGCCC GGGAGATCCG
AGTCCATCCG CGGCGGGGAG AGGGCGAACG GGGTTGGCGG AGGCCGCCAT GGAGCTCAGA
GTGGGGAACA GGTACCGGCT GGGCCGGAAG ATCGGCAGCG GGTCCTTCGG AGACATCTAT
CTCGGTACGG ACATTGCTGC GGGAGAAGAA GTTGCCATCA AGTTTGAATG TGTCAAAACT
AAGCACCCTC AGCTCCACAT CGAGAGCAAA ATCTACAAGA TGATGCAGGG AGGAGTGGGC
ATCCCCACCA TCCGGTGGTG TGGGGCCGAG GGCGACTACA ACGTCATGGT CATGGAGCTG
CTGGGGCCCA GCCTGGAGGA CCTCTTCAAC TTCTGCTCCA GGAAGTTCAG CCTCAAGACC
GTCCTGCTGC TCGCTGACCA GATGATCAGC CGCATCGAGT ACATCCACTC GAAGAACTTC
ATCCACCGGG ACGTGAAGCC GGACAACTTC CTCATGGGGC TGGGCAAGAA GGGCAACCTG
GTGTACATCA TCGACTTCGG GCTGGCCAAG AAGTACCGGG ACGCCCGCAC CCACCAGCAC
ATCCCCTACC GCGAGAACAA GAACCTCACC GGCACCGCGC GCTACGCCTC CATCAACACG
CACCTCGGCA TCGAACAATC TCGGAGGGAC GACCTGGAAT CTCTGGGCTA CGTGCTCATG
TACTTCAACC TGGGCTCGCT GCCCTGGCAG GGCCTGAAGG CGGCCATCCA GCGCCAGAAG
TACGAGCGCA TCAGCGAGAA GAAGATGTCC ACGCCCATCG AGGTGCTCTG NCAAGGCTAC
CCCTCCGAGT TCGCCACGTA CCTGAACTTC TGCCGTTCCC TGCGCTTTGA TGACAAGCCT
GACTACTCCT ACCTGAAGCA GCTCTTCCGG AACCTGTTCC ACCGC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CSNK1D	casein kinase I isoform delta isoform 2 [Homo sapiens].	560	e-160	O
		CSNK1D	casein kinase I isoform delta isoform 1 [Homo sapiens].	560	e-160	O
		CSNK1E	casein kinase I isoform epsilon [Homo sapiens].	548	e-156	O
		CSNK1E	casein kinase I isoform epsilon [Homo sapiens].	548	e-156	O
		CSNK1A1	casein kinase I isoform alpha isoform 2 [Homo sapiens].	440	e-124	O
		CSNK1A1	casein kinase I isoform alpha isoform 1 [Homo sapiens].	425	e-119	O
		CSNK1A1L	casein kinase I isoform alpha-like [Homo sapiens].	419	e-117	O
		CSNK1G3	casein kinase I isoform gamma-3 isoform 3 [Homo sapiens].	334	6e-92	O
		CSNK1G3	casein kinase I isoform gamma-3 isoform 2 [Homo sapiens].	334	6e-92	O
		CSNK1G3	casein kinase I isoform gamma-3 isoform 4 [Homo sapiens].	334	6e-92	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Csnk1d	casein kinase I isoform delta isoform 2 [Mus musculus].	560	e-160	O
		Csnk1d	casein kinase I isoform delta isoform 1 [Mus musculus].	560	e-160	O
		Csnk1e	casein kinase I isoform epsilon [Mus musculus].	548	e-156	O
		Csnk1a1	casein kinase I isoform alpha [Mus musculus].	440	e-124	O
		Csnk1g3	casein kinase I isoform gamma-3 [Mus musculus].	338	3e-93	O
		Csnk1g1	casein kinase I isoform gamma-1 [Mus musculus].	335	3e-92	O
		Csnk1g2	casein kinase I isoform gamma-2 isoform 2 [Mus musculus].	332	2e-91	O
		Csnk1g2	casein kinase I isoform gamma-2 isoform 1 [Mus musculus].	318	3e-87	O
		Ttbk1	tau-tubulin kinase 1 [Mus musculus].	169	4e-42	O
		Ttbk2	tau-tubulin kinase 2 isoform 2 [Mus musculus].	163	2e-40	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC474510	PREDICTED: similar to casein kinase 1 epsilon isoform 8 [Canis familiaris].	548	e-156	O
		LOC474510	PREDICTED: similar to casein kinase 1 epsilon isoform 7 [Canis familiaris].	548	e-156	O
		LOC474510	PREDICTED: similar to casein kinase 1 epsilon isoform 1 [Canis familiaris].	548	e-156	O
		LOC474510	PREDICTED: similar to casein kinase 1 epsilon isoform 3 [Canis familiaris].	548	e-156	O
		LOC475928	"PREDICTED: similar to casein kinase 1, delta isoform 2 [Canis familiaris]. "	508	e-144	O
		LOC474510	PREDICTED: similar to casein kinase 1 epsilon isoform 6 [Canis familiaris].	496	e-140	O
		LOC479331	"PREDICTED: similar to casein kinase 1, alpha 1 isoform 15 [Canis familiaris]. "	440	e-124	O
		LOC479331	"PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha) (CK1) isoform 1 [Canis familiaris]. "	440	e-124	O
		LOC479331	"PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha) (CK1) isoform 3 [Canis familiaris]. "	440	e-124	O
		LOC479331	"PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha) (CK1) isoform 12 [Canis familiaris]. "	439	e-123	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		CSNK1D	"casein kinase 1, delta [Bos taurus]. "	560	e-160	O
		CSNK1E	casein kinase 1 epsilon [Bos taurus].	548	e-156	O
		CSNK1A1	casein kinase I isoform alpha [Bos taurus].	440	e-124	O
		LOC100300748	PREDICTED: casein kinase I alpha-like [Bos taurus].	420	e-117	O
		LOC613515	PREDICTED: casein kinase I-like [Bos taurus].	413	e-115	O
		LOC613515	PREDICTED: casein kinase I-like [Bos taurus].	413	e-115	O
		LOC100138998	PREDICTED: casein kinase I-like [Bos taurus].	386	e-107	O
		LOC100138998	PREDICTED: casein kinase I-like [Bos taurus].	386	e-107	O
		CSNK1B	casein kinase I isoform beta [Bos taurus].	379	e-105	O
		CSNK1D	"PREDICTED: casein kinase 1, delta [Bos taurus]. "	374	e-104	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		CSNK1E	PREDICTED: casein kinase I isoform epsilon-like [Sus scrofa].	548	e-156	O
		LOC100514516	PREDICTED: casein kinase I isoform alpha-like isoform 1 [Sus scrofa].	440	e-124	O
		LOC100514516	PREDICTED: casein kinase I isoform alpha-like isoform 2 [Sus scrofa].	425	e-119	O
		LOC100511866	PREDICTED: casein kinase I isoform gamma-3-like [Sus scrofa].	339	1e-93	O
		CSNK1G2	PREDICTED: casein kinase I isoform gamma-2-like [Sus scrofa].	313	1e-85	O
		LOC100157196	"PREDICTED: casein kinase I isoform gamma-1-like, partial [Sus scrofa]. "	306	1e-83	O
		LOC100157536	PREDICTED: tau-tubulin kinase 1-like [Sus scrofa].	169	2e-42	O
		TTBK1	PREDICTED: tau-tubulin kinase 1-like [Sus scrofa].	169	2e-42
		VRK2	PREDICTED: serine/threonine-protein kinase VRK2-like [Sus scrofa].	120	1e-27	O
		LOC100157930	PREDICTED: serine/threonine-protein kinase VRK1-like [Sus scrofa].	109	2e-24

Alignment:      TOP

20101001C-000863 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
PBL01_0024_F10.b :                     aaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PTG01_0087_C05.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnxxxxxxxxxxxxxxxxxx


20101001C-000863 : ........CAGCGCGATGGCGGCGGCTCCTTCAGGCCCCTGAAGGGGGATTTAGGCCCGG
                   ---------+---------+---------+---------+---------+---------+ 52
PBL01_0024_F10.b : xxxxxxxxCAGCGCGATGGCGGCGGCTCCTTCAGGCCCCTGAAGGGGGATTTAGGCCCGG
PTG01_0087_C05.b : xxxxxxxxxxGCGCGATGGCGGCGGCTCCTTCAGGCCCCTGAAGGGGGATTTAGGCCCGG


20101001C-000863 : GAGATCCGAGTCCATCCGCGGCGGGGAGAGGGCGAACGGGGTTGGCGGAGGCCGCCATGG
                   ---------+---------+---------+---------+---------+---------+ 112
PBL01_0024_F10.b : GAGATCCGAGTCCATCCGCGGCGGGGAGAGGGCGAACGGGGTTGGCGGAGGCCGCCATGG
PTG01_0087_C05.b : GAGATCCGAGTCCATCCGCGGCGGGGAGAGGGCGAACGGGGTTGGCGGAGGCCGCCATGG


20101001C-000863 : AGCTCAGAGTGGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGGTCCTTCGGAG
                   ---------+---------+---------+---------+---------+---------+ 172
PBL01_0024_F10.b : AGCTCAGAGTGGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGGTCCTTCGGAG
PTG01_0087_C05.b : AGCTCAGAGTGGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGGTCCTTCGGAG


20101001C-000863 : ACATCTATCTCGGTACGGACATTGCTGCGGGAGAAGAAGTTGCCATCAAGTTTGAATGTG
                   ---------+---------+---------+---------+---------+---------+ 232
PBL01_0024_F10.b : ACATCTATCTCGGTACGGACATTGCTGCGGGAGAAGAAGTTGCCATCAAGCTTGAATGTG
PTG01_0087_C05.b : ACATCTATCTCGGTACGGACATTGCTGCGGGAGAAGAAGTTGCCATCAAGTTTGAATGTG


20101001C-000863 : TCAAAACTAAGCACCCTCAGCTCCACATCGAGAGCAAAATCTACAAGATGATGCAGGGAG
                   ---------+---------+---------+---------+---------+---------+ 292
PBL01_0024_F10.b : TCAAAACTAAGCACCCTCAGCTCCACATCGAGAGCAAAATCTACAAGATGATGCAGGGAG
PTG01_0087_C05.b : TCAAAACTAAGCACCCTCAGCTCCACATCGAGAGCAAAATCTACAAGATGATGCAGGGAG


20101001C-000863 : GAGTGGGCATCCCCACCATCCGGTGGTGTGGGGCCGAGGGCGACTACAACGTCATGGTCA
                   ---------+---------+---------+---------+---------+---------+ 352
PBL01_0024_F10.b : GAGTGGGCATCCCCACCATCCGGTGGTGTGGGGCCGAGGGCGACTACAACGTCATGGTCA
PTG01_0087_C05.b : GAGTGGGCATCCCCACCATCCGGTGGTGTGGGGCCGAGGGCGACTACAACGTCATGGTCA


20101001C-000863 : TGGAGCTGCTGGGGCCCAGCCTGGAGGACCTCTTCAACTTCTGCTCCAGGAAGTTCAGCC
                   ---------+---------+---------+---------+---------+---------+ 412
PBL01_0024_F10.b : TGGAGCTGCTGGGGCCCAGCCTGGAGGACCTCTTCAACTTCTGCTCCAGGAAGTTCAGCC
PTG01_0087_C05.b : TGGAGCTGCTGGGGCCCAGCCTGGGGGACCTCTTCAACTTCTGCTCCAGGAAGTTCAGCC


20101001C-000863 : TCAAGACCGTCCTGCTGCTCGCTGACCAGATGATCAGCCGCATCGAGTACATCCACTCGA
                   ---------+---------+---------+---------+---------+---------+ 472
PBL01_0024_F10.b : TCAAGACCGTCCTGCTGCTCGCTGACCAGATGATCAGCCGCATCGAGTACATCCACTCGA
PTG01_0087_C05.b : TCAAGACCGTCCTGCTGCTCGCTGACCAGATGATCAGCCGCATCGAGTACATCCACTCGA


20101001C-000863 : AGAACTTCATCCACCGGGACGTGAAGCCGGACAACTTCCTCATGGGGCTGGGCAAGAAGG
                   ---------+---------+---------+---------+---------+---------+ 532
PBL01_0024_F10.b : AGAACTTCATCCACCGGGACGTGAAGCCGGACAACTTCCTCATGGGGCTGGGCAAGAAGG
PTG01_0087_C05.b : AGAACTTCATCCACCGGGACGTGAAGCCGGACAACTTCCTCATGGGGCTGGGCAAGAAGG


20101001C-000863 : GCAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGACGCCCGCACCC
                   ---------+---------+---------+---------+---------+---------+ 592
PBL01_0024_F10.b : GCAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGACGCCCGCACCC
PTG01_0087_C05.b : GCAACCTGGTGTACATCATCGACTTCGGGCTGGCCCAGAAGTACCGGGACGCCCGCACCC


20101001C-000863 : ACCAGCACATCCCCTACCGCGAGAACAAGAACCTCACCGG*CACCGCGCGCTACGCCTCC
                   ---------+---------+---------+---------+---------+---------+ 651
PBL01_0024_F10.b : ACCAGCACATCCCCTACCGCGAGAACAAGAACCTCACCGG*CACCGCGCGCTACGCCTCC
PTG01_0087_C05.b : ACCAGCACATCCCCTACCGCGAGAACAAGAACCTCAACGGGCACCGCGCGCTACGCCTCC


20101001C-000863 : ATCAACACGCACCTCGGCATCGAACAATCTCGGAGGGACGACCTGGAATCTCTGGGCTAC
                   ---------+---------+---------+---------+---------+---------+ 711
PBL01_0024_F10.b : ATCAACACGCACCTCGGCATCGAACAATCTCGGAGGGACGACCTGGAATCTCTGGGCTAC
PTG01_0087_C05.b : ATCAACACGCACCTCGGCATCGAACAATCTCGGAGGGACGACCTGNNATCTCTGGGCTAC


20101001C-000863 : GTGCTCATGTACTTCAACCTGGGCTCGCTGCCCTGGCAGGGCCTGAAGGCGGCCATCCAG
                   ---------+---------+---------+---------+---------+---------+ 771
PBL01_0024_F10.b : GTGCTCATGTACTTCAACCTGNGCTCGCTGCCCTGGCAGGGCCTGAANGCGGCCATCCAG
PTG01_0087_C05.b : GGGCTCATGTACTTCAACCTGGGCTCGCTGCCCTGGCAGGGCCTGAAGGCcggccaccaa


20101001C-000863 : CGCCAGAAGTACGAGCGCATCAGCGAGAAGAAGATGTCCACGCCCATCGAGGTGCTCTGN
                   ---------+---------+---------+---------+---------+---------+ 831
PBL01_0024_F10.b : CGCCAGAAGTACGAGCGCATCAGCGAGAAGAAGATGTCCACGCCCATCGAGGTGCTCTGN
PTG01_0087_C05.b : ccgcagaagtacaagcgcctcaccaagaaaaaatgtcacccccatcaggtggtctgcaaa


20101001C-000863 : CAAGGCTACCCCTCCGAGTTCGCCACGTACCTGAACTTCTGCCGTTCCCTGCGCTTTGAT
                   ---------+---------+---------+---------+---------+---------+ 891
PBL01_0024_F10.b : CAAGGCTACCCCTCCGAGTTCGCCACGTACCTGAACTTCTGCCGTTCCCTGCGCTTTGAT
PTG01_0087_C05.b : ggctacccctcccagttccccccgtaccgaaattctggcgttccctggcctttgatgaaa


20101001C-000863 : GACAAGCCTGACTACTCCTACCTGAAGCAGCTCTTCCGGAACCTGTTCCACCGC......
                   ---------+---------+---------+---------+---------+---------+ 945
PBL01_0024_F10.b : GACAAGCCTGACTACTCCTACCTGAAGCAGCTCTTCCGGAACCTGTTCCACCGCagggct
PTG01_0087_C05.b : accctgaattcctcctactggagggaccctttcggaacctgttcccccccagggttttcc


20101001C-000863 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 945
PBL01_0024_F10.b : tctcctacgataacttcttgaatggaactgctcaattttggagccgtccgggaaccgaca
PTG01_0087_C05.b : caaaaaaaaatttttaagggaaaatgcccattttggaaccccgggggcccaaaaacccaa


20101001C-000863 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 945
PBL01_0024_F10.b : acccaaacggaaccccgggaccaaaggagcgctgaaaaattccgaacccatcccccgggc
PTG01_0087_C05.b : agggaacccgggccaaaaagaagcttaaaaatcccgaacccaaccccggggctccccccg


20101001C-000863 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 945
PBL01_0024_F10.b : ctccctcaaggcttagcggctgaaggggaccagagggggcctccaccccttacctaatta
PTG01_0087_C05.b : gggtttgggggggaggggaccagagggggccctcccccccttcctttttaacacgggaaa


20101001C-000863 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 945
PBL01_0024_F10.b : aaagggaacctttcccgcccgttcgcttgaaaaacgcaaagtgattggttgccccgggcc
PTG01_0087_C05.b : acctcccccccttttcggtaaaaaaaaaaaaaatttttttttccccggcccccctttttt


20101001C-000863 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 945
PBL01_0024_F10.b : ccctaatatctcttcgatcttgggggaaatcccccctgttccccgaaaaattctttaaac
PTG01_0087_C05.b : tctcccccctcgggggaaaaaacccccgctccccccaaaaattttcttcaacccaaaaat


20101001C-000863 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 945
PBL01_0024_F10.b : ccgcgatatngnctccttaaaacccgtattcggggggcccgctctccccgcgcggaacct
PTG01_0087_C05.b : ttcccccccccaaaaaatttttgcgggggggccccccccccccccccgaaaaccttttgg


20101001C-000863 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 945
PBL01_0024_F10.b : cttgagaaattggacatttgttagaccctataaatccgggttcccccaccccgaaaacac
PTG01_0087_C05.b : ggaggaggcgccctttttttccccgcgaaaaaaaccgcggcccc