[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20101001C-004464
Length:
1,319
Sequence:
[FASTA format sequence]
TAGAAGGCAG TGGCTGCAGG TGGCTGTCGG TTTAAGCAGT TGCGTGCGCT CTCTCTCTCT
CTCTCTCTTC TGGGACTCTC GGGAGCTGCG GCTCCGGCGC CAGGTGGCAA GACGCGGGTC
TCGGAGACGC CAGCCTCCGT GCATCCCACT GTGGTTCGGG GGTGGTGGTT TTTAAGTACG
GAAGGGCCCT TGGTTCCACC GGAGGAATCT GCCGTGGGTC CCCGAGTTCC TGGAGCTGTC
TTCCGTATAC CTGAGTCAGA CCAGAGCACA GTCCGAAGGG CGGGCAGGAG GGCTCATCTG
TGTACTGTGT GCAGTAAAAC ATTCCAACCA TCTGTCAGGA AAGTGTTCCC ACTATGGATT
TCAAGTCTGT CTCAAAGCAG CAGTCCAGGA CCAGGACCTC TTCTAGGGAG GAGCGAGTGC
CTGATCAGAA TGGCTGTGGG ATGGTTTTAC CTGTCGGCCC TGGCGCTGTT CTCCCTGGGC
TCCATGTGCA TCCTCTCCAC CATCTATTGG ATGCGGTACT GGCACAAAGG CTTTGCCTGG
GATGGCACCA TACTCACGTT CAACTGGCAC CCGGTGCTCA TGGTGACTGG CATGGTGGTG
CTCTACAGTG CTGCGTCGCT GGCGTACCGC CTGCCCCAGT CATGGGTAGG GCCCAAGCTG
CCCTGGAAGT TGGGCCACGC AGCCATGCAC CTGATGGCCT TCATCCTGAC TGTGCTGGGG
CTGGCGGCCG TCTTTAACTT TCACAACCAC GAGAAGATCC CCAACCTCTA CTCCCTGCAC
AGCTGGCTGG GCATCACCAC CGTCTTCCTC TTCGCCTGCC AGTGGTTCTT GGGCTTTGTG
GTCTTTCTGC TGCCCTGGGC GTCTGTGCGG CTGCGCAGCC TCCTTAAACC CATCCACGTC
TTCTTTGGAG CCTCCATTCT CTCTCTGGCC ATTGCGTCTG TCATTTCCGG CATCAATGAG
AAGCTCTTCT TCAGTCTGAA AAATGGCACC ACTTCATACT CCAACCTGCC CGATGAGGCC
GTCTTCGCGA ACAGTGCGGG GATGCTGGTG GTGGTCTTTG GGCTGCTGGT GCTCTATATC
TTACAGGCCT CGTCTTGGAA ACGCCCAGAG CCAGGGCTCC AGGCCGAAAG ACAGACCCTG
TTGCACGGGG AGGAGTGAAG CAGGAAGGGG TTCCAGGAGC AGTTGCCAGG CGGTCTTCAG
AAGCTCTGCT TTTCCGGGGG CTCCCGTCTG GTTTGGGCCC CAGTCCCCCT CGCCTCTGTG
CTGGGCCTGC TCTCCCACAG CCTGCTGCCA ACCCCCTCTC CATGGTGGCT TTGGCTGCT
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | LOC100519643 | PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 1 [Sus scrofa]. | 444 | e-125 | O |
|
| LOC100519643 | PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 2 [Sus scrofa]. | 444 | e-125 | O |
|
| CYBRD1 | cytochrome b reductase 1 [Sus scrofa]. | 190 | 1e-48 | O |
|
| CYB561 | cytochrome b561 [Sus scrofa]. | 141 | 8e-34 | O |
|
20101001C-004464 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
SPL01_0104_H12.b : ntttggcatgtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PCT01_0025_H11.b :
PCT01_0018_A07.b :
20101001C-004464 : .....................TAGAAGGCAGTGGCTGCAGGTGGCTGTCGGTTTAAGCAG
---------+---------+---------+---------+---------+---------+ 39
SPL01_0104_H12.b : xxxxxxxxxxxxxxxxxxxxxTAGAAGGCAGTGGCTGCAGGTGGCTGTCGGTTTAAGCAG
PCT01_0025_H11.b :
PCT01_0018_A07.b :
20101001C-004464 : TTGCGTGCGCTCTCTCTCTCTCTCTCTCTTCTGGGACTCTCGGGAGCTGCGGCTCCGGCG
---------+---------+---------+---------+---------+---------+ 99
SPL01_0104_H12.b : TTGCGTGCGctctctctctctctctctctTCTGGGACTCTCGGGAGCTGCGGCTCCGGCG
PCT01_0025_H11.b :
PCT01_0018_A07.b :
20101001C-004464 : CCAGGTGGCAAGACGCGGGTCTCGGAGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGG
---------+---------+---------+---------+---------+---------+ 159
SPL01_0104_H12.b : CCAGGTGGCAAGACGCGGGTCTCGGAGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGG
PCT01_0025_H11.b :
PCT01_0018_A07.b :
20101001C-004464 : GGGTGGTGGTTTTTAAGTACGGAAGGGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGT
---------+---------+---------+---------+---------+---------+ 219
SPL01_0104_H12.b : GGGTGGTGGTTTTTAAGTACGGAAGGGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGT
PCT01_0025_H11.b :
PCT01_0018_A07.b :
20101001C-004464 : CCCCGAGTTCCTGGAGCTGTCTTCCGTATACCTGAGTCAGACCAGAGCACAGTCCGAAGG
---------+---------+---------+---------+---------+---------+ 279
SPL01_0104_H12.b : CCCCGAGTTCCTGGAGCTGTCTTCCGTATACCTGAGTCAGACCAGAGCACAGTCCGAAGG
PCT01_0025_H11.b :
PCT01_0018_A07.b :
20101001C-004464 : GCGGGCAGGAGGGCTCATCTGTGTACTGTGTGCAGTAAAACATTCCAACCATCTGTCAGG
---------+---------+---------+---------+---------+---------+ 339
SPL01_0104_H12.b : GCGGGCAGGAGGGCTCATCTGTGTACTGTGTGCAGTAAAACATTCCAACCATCTGTCAGG
PCT01_0025_H11.b :
PCT01_0018_A07.b :
20101001C-004464 : AAAGTGTTCCCACTATGGATTTCAAGTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCT
---------+---------+---------+---------+---------+---------+ 399
SPL01_0104_H12.b : AAAGTGTTCCCACTATGGATTTCAAGTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCT
PCT01_0025_H11.b :
PCT01_0018_A07.b :
20101001C-004464 : CTTCTAGGGAGGAGCGAGTGCCTGATCAGAATGGCTGTGGGATGGTTTTACCTGTCGGCC
---------+---------+---------+---------+---------+---------+ 459
SPL01_0104_H12.b : CTTCTAGGGAGGAGCGAGTGCCTGATCAGAATGGCTGTGGGATGGTTTTACCTGTCGGCC
PCT01_0025_H11.b : nnnggcgtcnnnnncaaactacgggtgctaggtgtc
PCT01_0018_A07.b : nnncccgttttnnnnnncctac
20101001C-004464 : CTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCTCCACCATCTATTGGATGCGGTAC
---------+---------+---------+---------+---------+---------+ 519
SPL01_0104_H12.b : CTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCTCCACCATCTATTGGATGCGGTAC
PCT01_0025_H11.b : gcctggcgctgttctcctgggctCATGTGCATCCTCTCCACCATCTATTGGATGCGGTAC
PCT01_0018_A07.b : gggtccacggggtctcctgggctccTGTGCATCCTCTCCACCATCTATTGGATGCGGTAC
20101001C-004464 : TGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCACGTTCAACTGGCACCCGGTGCTC
---------+---------+---------+---------+---------+---------+ 579
SPL01_0104_H12.b : TGGCACGAAGGCTTTGCCTGAGATGGCACCATACTCACGTTCAACTGGCACCCGGTGCTC
PCT01_0025_H11.b : TGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCACGTTCAACTGGCACCCGGTGCTC
PCT01_0018_A07.b : TGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCACGTTCAACTGGCACCCGGTGCTC
20101001C-004464 : ATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGTCGCTGGCGTACCGCCTGCCCCAG
---------+---------+---------+---------+---------+---------+ 639
SPL01_0104_H12.b : ATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGTCACTGGCGTACCGCCTGCCCCAG
PCT01_0025_H11.b : ATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGTCGCTGGCGTACCGCCTGCCCCAG
PCT01_0018_A07.b : ATGGTGACTGGCATGGTGGCGCTCTACAGTGCTGCGTCGCTGGCGTACCGCCTGCCCCAG
20101001C-004464 : TCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCCACGCAGCCATGCACCTGATGGCC
---------+---------+---------+---------+---------+---------+ 699
SPL01_0104_H12.b : TCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCCACGCAGCCATGCACCTGATGGCC
PCT01_0025_H11.b : TCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCCACGCAGCCATGCACCTGATGGCC
PCT01_0018_A07.b : TCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCCACGCAGCCATGCACCTGATGGCC
20101001C-004464 : TTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTAACTTTCACAACCACGAGAAGATC
---------+---------+---------+---------+---------+---------+ 759
SPL01_0104_H12.b : TTCATCCTGACTGTGCTGGGGCTGGCGGGCGTCTTTAACTCTCACAACCACGAGAAGATC
PCT01_0025_H11.b : TTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTAACTTTCACAACCACGAGAAGATC
PCT01_0018_A07.b : TTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTAACTTTCACAACCACGAGAAGATC
20101001C-004464 : CCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCACCACCGTCTTCCTCTTCGCCTGC
---------+---------+---------+---------+---------+---------+ 819
SPL01_0104_H12.b : CCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCACCACCGTCTTCCTCTTCGCCTGC
PCT01_0025_H11.b : CCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCACCACCGTCTTCCTCTTCGCCTGC
PCT01_0018_A07.b : CCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCACCACCGTCTTCCTCTTCGCCTGC
20101001C-004464 : CAGTGGTTCTTGGGCTTTGTGGTCTTTCTGCTGC*CCTGGGCGTCTGTGCGGCTGCGCAG
---------+---------+---------+---------+---------+---------+ 878
SPL01_0104_H12.b : CAGTGGTTCTTGGGGCTTGTGGTCTTTCTGCTGCCCCTGGGCGTCTGTGCGGCTGCGCAG
PCT01_0025_H11.b : CAGTGGTTCTTGGGCTTTGTGGTCTTTCTGCTGC*CCTGGGCGTCTGTGCGGCTGCGCAG
PCT01_0018_A07.b : CAGTGGTTCTTGGGCTTTGTGGTCTTTCTGCTGC*CCTGGGCGTCTGTGCGGCTGCGCAG
20101001C-004464 : CCTCCTTAAACCCATCCACGTCTTCTTTGGAGCCTCCATTCTCTCTCTGGCCATTGCGTC
---------+---------+---------+---------+---------+---------+ 938
SPL01_0104_H12.b : CCTCCTTAAACCCATCCACGTCCTCTTTGGAGCCTC*ATTCTCTCTCTGGCCATTGCGTC
PCT01_0025_H11.b : CCTCCTTAAACCCATCCACGTCTTCTTTGGAGCCTCCATTCTCTCTCTGGCCATTGCGTC
PCT01_0018_A07.b : CCTCCTTAAACCCATCCACGTCTTCTTTGGAGCCTCCATTCTCTCTCTGGCCATTGCGTC
20101001C-004464 : TGTCATTTCCGGCATCAATGAGAAGCTCTTCTTCAGTCTGAAAAATGGCACCACTTCATA
---------+---------+---------+---------+---------+---------+ 998
SPL01_0104_H12.b : TGTCATTTCCGGCATCCATGAGAAACTCCTCCTCAGTTTGAAAAAGGGGACCACTTCATt
PCT01_0025_H11.b : TGTCATTTCCGGCATCAATGAGAAGCTCTTCTTCAGTCTGAAAAATGGCACCACTTCATA
PCT01_0018_A07.b : TGTCATTTCCGGCATCAATGAGAAGCTCTTCTTCAGTCTGAAAAATGGCACCACTTCATA
20101001C-004464 : CTCCAACCTGCCCGATGAGGCCGTCTTCGCGAACAGTGCGGGGATGCTGGTGGTGGTCTT
---------+---------+---------+---------+---------+---------+ 1058
SPL01_0104_H12.b : attccaaccggcccgaagg
PCT01_0025_H11.b : CTCCAACCTGCCCGATGAGGCCGTCTTCGCGAACAGTGCGGGGATGCTGGTGGTGGTCTT
PCT01_0018_A07.b : CTCCAACCTGCCCGATGAGGCCGTCTTCGCGAACAGTGCGGGGATGCTGGTGGTGGTCTT
20101001C-004464 : TGGGCTGCTGGTGCTCTATATCTTACAGGCCTCGTCTTGGAAACGCCCAGAGCCAGGGCT
---------+---------+---------+---------+---------+---------+ 1118
SPL01_0104_H12.b :
PCT01_0025_H11.b : TGGGCTGCTGGTGCTCTATATCTTACAGGCCTCGTCTTGGAAACGCCCAGAGCCAGTGCT
PCT01_0018_A07.b : TGGGCTGCTGGTGCTCTATATCTTACAGGCCTCGTCTTGGAAACGCCCAGAGCCAGGGCT
20101001C-004464 : CCAGGCCGAAAGACAGACCCTGTTGCACGGGGAGGAGTGAAGCAGGAAGGGGTTCCAGGA
---------+---------+---------+---------+---------+---------+ 1178
SPL01_0104_H12.b :
PCT01_0025_H11.b : CCAAGCCGAAAGACAGACCCTGTTGCACGGGGAGGAGTGAATCAGGAAGGGGTTCCAGGA
PCT01_0018_A07.b : CCAGGCCGAAAGACAGACCCTGTTGCACGGGGAAGAGTGAAGCANGAGGGGGTTCCCAGA
20101001C-004464 : GCAGTTGCCAGGCGGTCTTCAGAAGCTCTGCTTTTCCGGGGGCTCCCGTCTGGTTT*GGG
---------+---------+---------+---------+---------+---------+ 1237
SPL01_0104_H12.b :
PCT01_0025_H11.b : GCAGTTGCCAGGCGGTCTTCAGAGGCTCTGCTTTTTCGGGGGCTCCCGTCTGGTTTGGGG
PCT01_0018_A07.b : GCAGTTGCCAGGCGGTCTTCAGAAGCTCTGCTTTTCCGGGGACTCCCGTCTGGTTT*GGG
20101001C-004464 : CCCCAGTCCCCCTCGCCTCTGTGCTGGGCCTGCTCTCCC*ACAGCCTGCTGCCAACCCCC
---------+---------+---------+---------+---------+---------+ 1296
SPL01_0104_H12.b :
PCT01_0025_H11.b : CCCCAGTCCACCTCGCCTCTGTGCTGGACCTGCTCTCCCCACAGCCTGCTGCCAACCCCC
PCT01_0018_A07.b : CCCCAGTCCCCCTCGCCTCTGTGCTGGGCCTGCTCTCCC*ACAGCCTGCTGCCCAC*CCC
20101001C-004464 : TCTCCATGGTGGCTTTGGCTGCT.....................................
---------+---------+---------+---------+---------+---------+ 1319
SPL01_0104_H12.b :
PCT01_0025_H11.b : TCTCCATGGTGGCTTTGGCTGCTcaagcccttcttggcattgacttccccagtcctctgg
PCT01_0018_A07.b : TCTCCATGNTGGCTTTGGCTGCTccaccctttctgnncatgacttccnaggtctctgttt
20101001C-004464 : ............................................................
---------+---------+---------+---------+---------+---------+ 1319
SPL01_0104_H12.b :
PCT01_0025_H11.b : ttaccccgggcccccttggcgtgnttccccgctctgccaattctgctaaaaggaataagg
PCT01_0018_A07.b : acccgggccccctgccctggntgccngcgctgcaaatctgctcaaaagagtcaagtcatt
20101001C-004464 : ............................................................
---------+---------+---------+---------+---------+---------+ 1319
SPL01_0104_H12.b :
PCT01_0025_H11.b : gtcatttcccttctaaaccccgggaattgggaaaaaacctaaatgccaaaaaaactggaa
PCT01_0018_A07.b : ccccctcagacccccgggatgtggaaaaaacctgatgctcaaataactgggatggaccaa
20101001C-004464 : ............................................................
---------+---------+---------+---------+---------+---------+ 1319
SPL01_0104_H12.b :
PCT01_0025_H11.b : atgaacccancggtcctggaaataggggaaggtatgtttctttatttttcccggaaagtc
PCT01_0018_A07.b : ctgtgctggatgaggggagcaatcttcatagcttccctgcagtaagggcccccctggtgg
20101001C-004464 : ............................................................
---------+---------+---------+---------+---------+---------+ 1319
SPL01_0104_H12.b :
PCT01_0025_H11.b : aggccccccccgggtttccattttttgttttgttttcttccgcccccccgaaggaggggg
PCT01_0018_A07.b : ctttctgttggttccgccagccctcgaagagggggggaaacctcccagggaaggaaggcc
20101001C-004464 : ............................................................
---------+---------+---------+---------+---------+---------+ 1319
SPL01_0104_H12.b :
PCT01_0025_H11.b : ggcccaaccctcccctttgggaaaggaaaggccaagggcaacctttccccataaaataaa
PCT01_0018_A07.b : aaggaaatttcccaaaaataagccctgccggtctggttaaaggccttttggttaaagggg
20101001C-004464 : ............................................................
---------+---------+---------+---------+---------+---------+ 1319
SPL01_0104_H12.b :
PCT01_0025_H11.b : gccccttttcccgcctccaggtaaaaaaaactcttttgtggtttaaaacgggggggaacc
PCT01_0018_A07.b : gatatcctttttgtaaaacccccgaaattttaaggggggttaacaaaaaattttccccct
20101001C-004464 : ............................................................
---------+---------+---------+---------+---------+---------+ 1319
SPL01_0104_H12.b :
PCT01_0025_H11.b : cccttcccggggaaaacccccccccggaaaaccttccaacggggcgctggaaaaaagaaa
PCT01_0018_A07.b : ggaaataatttttggggggttttgttcccaaaaaaaatggccaacaacccctttttttaa
20101001C-004464 : ............................................................
---------+---------+---------+---------+---------+---------+ 1319
SPL01_0104_H12.b :
PCT01_0025_H11.b : aattctttcctcccttctgggagaacctttctttttttttggaactcccgcggtgatgca
PCT01_0018_A07.b : tcaccccaaaaannnannnngtgnnttttttccttccaaccggggctctccttttaaatt
20101001C-004464 : ............................................................
---------+---------+---------+---------+---------+---------+ 1319
SPL01_0104_H12.b :
PCT01_0025_H11.b : acca
PCT01_0018_A07.b :
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