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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20101001S-058450

Length: 1,173

Sequence:  [FASTA format sequence]
TTTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXGGC TCGGGGGCCG GGGCGCGGCT GCTGCAGCTC
TTGCAAGAGC AGAGCCGAGC CGAGCGCCCG CCGCTGCCCG CCGCCCGCTG CGTGCGCCTC
CGCGCCATGG CTGGCCTCAA CTCCCTGGAG GCGGTGAAAC GCAAGATCCA GGTCCTGCAG
CAGCAGGCGG ACGAGGCAGA AGATCGCGCG CACGGCCTGC ACCGGGAGCT GGACGGCGAG
CGCGAGCGGC GTGAGAAAGC CGAAAGGGAA GTAGCACCTC TCACTCGCCG CATCCAACTC
GCTGATGAGG ACTTGGATTT GGCTCATGAA CGACTGGCCA CCCGCTTGCC TATTTTTAAG
GATGAGAGAC CCGCTGAACA TGTAAATCCA TATAGCACTG ACCGCGATAA TAAAAATGGC
CACTCCTTTC TGTTTACTAT TATGTCCTTC TCCGTATTTT CCACTCTTGC TGTACCAATC
AACTTTTCTT ATTTAACCCA ACAGCTTAAT CTTTGATTAA TCTTCGATTG CTATTAACCA
TTTCCTGTGC CTATAACATC TCCTAGATAC ACACCCAAGC ATACAAAACT TCCACTTGAT
CTCACCTTCT CTATTCCGTT TTTTAATGTT TCAACCCCAT TCATCACTTT ATTGTTACAT
GCCACTCTCA TGACCGATTA ATTGCACCTA CGTTAAATCT CACTTAATGG AATCTTATTT
AATCATTCTT GTACTTAATA TATTCTTACT CCGATAAACT ATACGTCTCT TATTTTCACT
CCATAATTAA TTTCTTTATT TTTCTTATTA TCTCTTCTCC TCTGTTTTCC TTCACTCTCT
TGATCTCGCT ACAACAATCC CCTACATATC AATCATTGAT CACCAATTTA TATTTATCTC
ATTTAACTCC TATACTTCTT CTCTCTCTTC TCTCTACTCA CCATTATCCT TTCTCTTCTT
CTTCTTTTCT TCCACTCCTC CCTACTCTCT TCCCCTTTCA TACTAACCAA TATCTACAAA
GCCTTGTATA AATTGTATTC ATAAATCCAC CCTCTTGATT TTTCATCCAC GATCCCTACC
CTTCTCTTCT ACACCCTATC CCCGTCCCCT ATTATTATAT TTCTTATTGC TTTTCTATGT
TTGTTTTCCT AATTCGATAT TATTATATTA TTTAACGTAC TTTTTACTAT AATATTTTTT
TCCATTAATT CTAGAGTGGT CGTTTCTCCC TCAATCACTA AGATACACTG TAAATATTTA
TTCACCCCCT CAATTTTGTT CAATTATAGT TATGTTTCCC TCCATCATCT T

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain isoform 2 [Homo sapiens].	95.1	1e-19	O
		TPM3	tropomyosin alpha-3 chain isoform 5 [Homo sapiens].	83.2	4e-16	O
		TPM3	tropomyosin alpha-3 chain isoform 3 [Homo sapiens].	83.2	4e-16	O
		TPM3	tropomyosin alpha-3 chain isoform 4 [Homo sapiens].	83.2	4e-16	O
		TPM3	tropomyosin alpha-3 chain isoform 2 [Homo sapiens].	83.2	4e-16	O
		TPM1	tropomyosin alpha-1 chain isoform 6 [Homo sapiens].	75.5	9e-14	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tpm4	tropomyosin alpha-4 chain [Mus musculus].	90.5	2e-18	O
		Tpm1	tropomyosin alpha-1 chain isoform 10 [Mus musculus].	76.3	4e-14	O
		Tpm1	tropomyosin alpha-1 chain isoform 8 [Mus musculus].	76.3	4e-14	O
		Tpm1	tropomyosin alpha-1 chain isoform 7 [Mus musculus].	76.3	4e-14	O
		Tpm1	tropomyosin alpha-1 chain isoform 6 [Mus musculus].	76.3	4e-14	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC484695	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 6 [Canis familiaris].	83.2	4e-16	O
		LOC484695	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 5 [Canis familiaris].	83.2	4e-16	O
		LOC484695	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis familiaris].	83.2	4e-16	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis familiaris].	83.2	4e-16	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 24 [Canis familiaris].	83.2	4e-16	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 23 [Canis familiaris].	83.2	4e-16	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 22 [Canis familiaris].	83.2	4e-16	O
		LOC480137	"PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis familiaris]. "	83.2	4e-16	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 18 [Canis familiaris].	83.2	4e-16	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis familiaris].	83.2	4e-16	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		TPM3	PREDICTED: tropomyosin 4-like [Bos taurus].	81.3	2e-15	O
		TPM3	PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].	81.3	2e-15	O
		LOC540799	PREDICTED: tropomyosin 4-like [Bos taurus].	68.2	1e-11	O
		LOC540799	PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].	68.2	1e-11	O
		LOC783188	PREDICTED: tropomyosin 4-like [Bos taurus].	66.6	4e-11	O
		LOC783188	PREDICTED: tropomyosin 4 [Bos taurus].	66.6	4e-11	O
		LOC784223	PREDICTED: tropomyosin 4 [Bos taurus].	66.6	4e-11	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain [Sus scrofa].	95.1	6e-20	O
		TPM3	tropomyosin alpha-3 chain [Sus scrofa].	83.2	2e-16	O