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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20101001S-078947

Length: 678

Sequence:  [FASTA format sequence]
NAGTTGTACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXGGCT CGGGGGCCGG GGCGCGGCTG CTGCAGCTCT TGCAAGAGCA GAGCCGAGCC
GAGCGCCCGC CGCTGCCCGC CGCCCGCTGC GTGCGCCTCC GCGCCATGGC TGGCCTCAAC
TCCCTGGAGG CGGTGAAACG CAAGATCCAG GCCCTGCAGC AGCAGGCGGA CGAGGCAGAG
GATCGCGCGC AGGGCCTGCA GCGGGAGCTG GACGGCGAGC GCGAGCGGCG GGAGAAAGCC
GAAGGGGATG TAGCAGCTCT CAATCGGCGC ATCCAACTCG TTGAGGAAGA GTTGGACAGG
GCTCAGGAAC GACTGGCCAC AGCCCTGCAG AAGCTTGAGG AGGCAGAAAA GGCTGCAGAT
GAGAGCGAGA GAGGAATGAA GGTGATAGAA AACCGGGCCA TGAAAGATGA GGAGAAGATG
GAGATTCAGG AGATGCAACT CAAAGAGGCC AAGCACATTG CCGAGGAGGC CGATCCGCAA
TACGAGGAGG TAGCTCGTAA ATTGGTCATC CTGGAGGCCG AGCTGGATAA GGCATACAAG
CATGCCGAGG TGTCTCAACA AAAATGTGGT AACCGCGAGT ATCACCAGGC ACGTCTCTTA
CACATGCATT CACAAAAGGT TGTCCCAACA ATACTCCAAA ATCGAGAAAA ATACGAAAGG
ATACTAAAAT CTGTCCACAC ACTGTATAGC CGAAAATAGG CAAACCTTGA AATGAAAGGA
GCAAAGTTCA AAGCTTTGAT AAACTTAACC TAGCTACTTA CCAAAATGA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain isoform 2 [Homo sapiens].	201	5e-52	O
		TPM3	tropomyosin alpha-3 chain isoform 5 [Homo sapiens].	169	2e-42	O
		TPM3	tropomyosin alpha-3 chain isoform 4 [Homo sapiens].	169	2e-42	O
		TPM3	tropomyosin alpha-3 chain isoform 3 [Homo sapiens].	169	3e-42	O
		TPM3	tropomyosin alpha-3 chain isoform 2 [Homo sapiens].	169	3e-42	O
		TPM1	tropomyosin alpha-1 chain isoform 6 [Homo sapiens].	167	6e-42	O
		TPM4	tropomyosin alpha-4 chain isoform 1 [Homo sapiens].	155	2e-38
		TPM2	tropomyosin beta chain isoform 1 [Homo sapiens].	148	5e-36
		TPM2	tropomyosin beta chain isoform 2 [Homo sapiens].	141	6e-34
		TPM3	tropomyosin alpha-3 chain isoform 1 [Homo sapiens].	140	8e-34

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tpm4	tropomyosin alpha-4 chain [Mus musculus].	190	7e-49	O
		Tpm1	tropomyosin alpha-1 chain isoform 10 [Mus musculus].	169	2e-42	O
		Tpm1	tropomyosin alpha-1 chain isoform 8 [Mus musculus].	169	2e-42	O
		Tpm1	tropomyosin alpha-1 chain isoform 6 [Mus musculus].	169	2e-42	O
		Tpm1	tropomyosin alpha-1 chain isoform 7 [Mus musculus].	165	2e-41	O
		Tpm2	tropomyosin beta chain [Mus musculus].	148	4e-36
		Tpm1	tropomyosin alpha-1 chain isoform 9 [Mus musculus].	140	7e-34
		Tpm1	tropomyosin alpha-1 chain isoform 2 [Mus musculus].	140	7e-34
		Tpm1	tropomyosin alpha-1 chain isoform 1 [Mus musculus].	140	7e-34
		Tpm1	tropomyosin alpha-1 chain isoform 3 [Mus musculus].	140	7e-34

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 19 [Canis familiaris].	169	2e-42	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 18 [Canis familiaris].	169	2e-42	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 14 [Canis familiaris].	169	2e-42	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 9 [Canis familiaris].	169	2e-42	O
		LOC480137	"PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis familiaris]. "	169	2e-42	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis familiaris].	169	2e-42	O
		LOC484695	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis familiaris].	169	3e-42	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis familiaris].	169	3e-42	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 24 [Canis familiaris].	169	3e-42	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 23 [Canis familiaris].	169	3e-42	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		TPM3	PREDICTED: tropomyosin 4-like [Bos taurus].	158	4e-39	O
		TPM3	PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].	158	4e-39	O
		TPM4	tropomyosin alpha-4 chain [Bos taurus].	155	2e-38
		LOC540799	PREDICTED: tropomyosin 4-like [Bos taurus].	148	4e-36	O
		LOC540799	PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].	148	4e-36	O
		LOC783188	PREDICTED: tropomyosin 4-like [Bos taurus].	145	2e-35	O
		LOC783188	PREDICTED: tropomyosin 4 [Bos taurus].	145	2e-35	O
		LOC784223	PREDICTED: tropomyosin 4 [Bos taurus].	145	2e-35	O
		TPM2	tropomyosin beta chain [Bos taurus].	141	6e-34
		TPM1	tropomyosin alpha-1 chain [Bos taurus].	140	8e-34

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain [Sus scrofa].	201	3e-52	O
		TPM3	tropomyosin alpha-3 chain [Sus scrofa].	169	1e-42	O
		TPM1	tropomyosin alpha-1 chain [Sus scrofa].	140	4e-34
		TPM2	tropomyosin beta chain [Sus scrofa].	134	3e-32