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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-000028

Length: 1,090

Sequence:  [FASTA format sequence]
TTGTACCTGT CTTGAGAGGA TAATTTAATA TACTCTTGAA ACTCTTAAAA AAAAATTCCC
TGGAAAGTAA AAGTATCCAC TTTAAGGGAT TAGAGGTAAT TTAACTCCCT ATTTTTTTTT
TTCTGTATTG TAGAAAAATG ATTGTTTGAA TAAATGTCAC TGTTTTGTGT ACATTCGTTA
AACTGTATGA GATCAGTAAA CCACTTTCTG AGTTGTAATA GTAGCATAAA AATATGGGCT
ACGTTTGCGT GACTTTTTTT TTTTTTTTTT TTTCTGCTGC AAATCGTGGC ATATGGAGGT
TCCCAGGCTA GTGGTTGAAT TGGAGCTACA GCTGCCATTG TACACCACAG CCACAGCAGT
GTGGGATCTG AGCTACATCT GTAACCTACA CCACAGCTCA TGGCAAAGCT GGATCCTTAA
CCCACTGAGT GAGACCAGGG ATCGAACCCA CATCCTTGTG GATCCTAGTC GGGTTTGTTA
GCCACTGAAG CCCATGTAGG GAACTCCTTT TTAAAAGGTA TTGTTTATAT CTCTACCTCT
TTCTTTTCCG CCCGCTCCCC CCTCCCCCCG AGCGCCGCTC CGGCTGCACC GCGCTCGCTC
TGAGCTCCCG GTTCCTGCTA AGCTAGCGCC GCCGTCGTCT CCCTCCAGCC GCCATCATGA
TCATCTACCG GGACCTCATC AGCCATGATG AGATGTTTTC CGACATCTAC AAGATCCGGG
AGATCGCGGA CGGGCTGTGT CTGGAGGTGG AGGGGAAGAT GGTCAGTAGG ACAGAGGGTA
ACATTGATGA CTCGCTCATT GGTGGAAATG CCTCCGCTGA AGGGCCCGAG GGCGAAGGTA
CCGAAAGCAC AGTAATCACT GGTGTCGATA TTGTCATGAA CCATCACCTG CAGGAAACCA
GCTTCACAAA GGAAGCCCTA CAGAAGTACA TCAAAGATTA TATGAAAATC AATCAAGGGA
AAACTCGAGA ACAGAGACCC GAAGGAGTAA ACCTTTTATG ACAGGAGCTG CAAAACAAAT
CCAGCACATC CTTGCTAATT TCAAAACTAT CAGTTCTTTA TGGTGGAAAC ATGAATCCCA
ACGGCATGGT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TPT1	translationally-controlled tumor protein [Homo sapiens].	208	6e-54	O
		FLJ44635	TPT1-like protein [Homo sapiens].	174	5e-49	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tpt1	translationally-controlled tumor protein [Mus musculus].	202	3e-52	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC476924	PREDICTED: similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) isoform 1 [Canis familiaris].	208	6e-54	O
		LOC476924	PREDICTED: similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) isoform 7 [Canis familiaris].	208	6e-54	O
		LOC476924	PREDICTED: similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) isoform 6 [Canis familiaris].	208	6e-54	O
		LOC476924	PREDICTED: similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) isoform 4 [Canis familiaris].	208	6e-54	O
		LOC476924	PREDICTED: similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) isoform 3 [Canis familiaris].	206	2e-58	O
		LOC476924	PREDICTED: similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) isoform 2 [Canis familiaris].	178	4e-50	O
		LOC476924	PREDICTED: similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) isoform 5 [Canis familiaris].	141	1e-33	O
		LOC611644	PREDICTED: similar to Neuromedin-B receptor (NMB-R) (Neuromedin-B-preferring bombesin receptor) [Canis familiaris].	60.8	2e-09	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		TPT1	translationally-controlled tumor protein [Bos taurus].	208	8e-54	O
		LOC100337367	PREDICTED: tumor protein, translationally-controlled 1-like [Bos taurus].	208	8e-54	O
		TPT1	PREDICTED: tumor protein, translationally-controlled 1-like [Bos taurus].	202	4e-52	O
		TPT1	PREDICTED: tumor protein, translationally-controlled 1 [Bos taurus].	202	4e-52	O
		LOC100297647	PREDICTED: tumor protein, translationally-controlled 1-like [Bos taurus].	80.9	2e-15	O
		LOC100297647	PREDICTED: tumor protein, translationally-controlled 1-like [Bos taurus].	80.9	2e-15	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		TCTP	translationally-controlled tumor protein [Sus scrofa].	208	4e-54	O
		LOC100154612	PREDICTED: cytosolic purine 5'-nucleotidase [Sus scrofa].	174	6e-44	O
		LOC100626972	PREDICTED: hypothetical protein LOC100626972 [Sus scrofa].	68.2	2e-17	O

Alignment:      TOP

20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
ADR01_0072_B01.b : nnnnnttgactaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SMG01_0064_A04.b :                                                             


20110601C-000028 : TTGTACCTGTCTTGAGAGGATAATTTAATATACTCTTGAAACTCTTAAAAAAAAATTCCC
                   ---------+---------+---------+---------+---------+---------+ 60
ADR01_0072_B01.b : TTGTACCTGTCTTGAGAGGATAATTTAATATACTCTTGAAACTCTTAAAAAAAAATTCCC
SMG01_0064_A04.b :                                                             


20110601C-000028 : TGGAAAGTAAAAGTATCCACTTTAAGGGATTAGAGGTAATTTAACTCCCTATTTTTTTTT
                   ---------+---------+---------+---------+---------+---------+ 120
ADR01_0072_B01.b : TGGAAAGTAAAAGTATCCACTTTAAGGGATTAGAGGTAATTTAACTCCCTATTTTTTTTT
SMG01_0064_A04.b :                                                             


20110601C-000028 : TTCTGTATTGTAGAAAAATGATTGTTTGAATAAATGTCACTGTTTTGTGTACATTCGTTA
                   ---------+---------+---------+---------+---------+---------+ 180
ADR01_0072_B01.b : TTCTGTATTGTAGAAAAATGATTGTTTGAATAAATGTCACTGTTTTGTGTACATTCGTTA
SMG01_0064_A04.b :                                                             


20110601C-000028 : AACTGTATGAGATCAGTAAACCACTTTCTGAGTTGTAATAGTAGCATAAAAATATGGGCT
                   ---------+---------+---------+---------+---------+---------+ 240
ADR01_0072_B01.b : AACTGTATGAGATCAGTAAACCACTTTCTGAGTTGTAATAGTAGCATAAAAATATGGGCT
SMG01_0064_A04.b :                                                             


20110601C-000028 : ACGTTTGCGTGACTTTTTTTTTTTTTTTTTTTTCTGCTGCAAATCGTGGCATATGGAGGT
                   ---------+---------+---------+---------+---------+---------+ 300
ADR01_0072_B01.b : ACGTTTGCGTGACttttttttttttttttttttctgctgcaaatcgtggcatatggaggt
SMG01_0064_A04.b :                                                             


20110601C-000028 : TCCCAGGCTAGTGGTTGAATTGGAGCTACAGCTGCCATTGTACACCACAGCCACAGCAGT
                   ---------+---------+---------+---------+---------+---------+ 360
ADR01_0072_B01.b : tcccaggctagtggttgaattggagctacagctgccattgtacaccacagccacagcagt
SMG01_0064_A04.b :                                                             


20110601C-000028 : GTGGGATCTGAGCTACATCTGTAACCTACACCACAGCTCATGGCAAAGCTGGATCCTTAA
                   ---------+---------+---------+---------+---------+---------+ 420
ADR01_0072_B01.b : gtgggatctgagctacatctgtaacctacaccacagctcatggcaaagctggatccttaa
SMG01_0064_A04.b :                                                             


20110601C-000028 : CCCACTGAGTGAGACCAGGGATCGAACCCACATCCTTGTGGATCCTAGTCGGGTTTGTTA
                   ---------+---------+---------+---------+---------+---------+ 480
ADR01_0072_B01.b : cccactgagtgagaccagggatcgaacccacatccttgtggatcctagtcgggtttgtta
SMG01_0064_A04.b :                                              ntttnnnnnnaagct


20110601C-000028 : GCCACTGAAGCCCATGTAGGGAACTCCTTTTTAAAAGGTATTGTTTATATCTCTACCTCT
                   ---------+---------+---------+---------+---------+---------+ 540
ADR01_0072_B01.b : gccactgaagcccatgtagggaactccTTTTTAAAAGGTATTGTTTATATCTCTACCTCT
SMG01_0064_A04.b : ttttntnnggagtatagcagcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-000028 : TTCTTTTCCGCCCGCTCCCCCCTCCCCCCGAGCGCCGCTCCGGCTGCACCGCGCTCGCTC
                   ---------+---------+---------+---------+---------+---------+ 600
ADR01_0072_B01.b : TTCTTTTCCGCCCGCTCCCCCCTCCCCCCGAGCGCCGCTCCGGCTGCACCGCGCTCGCTC
SMG01_0064_A04.b : xGCTTTTCCGCCCGCTCCCCCCTCCCCCCGAGCGCCGCTCCGGCTGCACCGCGCTCGCTC


20110601C-000028 : TGAGCTCCCGGTTCCTGCTAAGCTAGCGCCGCCGTCGTCTCCCTCCAGCCGCCATCATGA
                   ---------+---------+---------+---------+---------+---------+ 660
ADR01_0072_B01.b : TGAGCTCCCGGTTCCTGCTAAGCTAGCGCCGCCGTCGTCTCCCTCCAGCCGCCATCATGA
SMG01_0064_A04.b : TGAGCTCCCGGTTCCTGCTAAGCTAGCGCCGCCGTCGTCTCCCTCCAGCCGCCATCATGA


20110601C-000028 : TCATCTACCGGGACCTCATCAGCCATGATGAGATGTTTTCCGACATCTACAAGATCCGGG
                   ---------+---------+---------+---------+---------+---------+ 720
ADR01_0072_B01.b : TCATCTACCGGGACCTCATCAGCCATGATGAGATGTTTTCCGACATCTACAAGATCCGGG
SMG01_0064_A04.b : TCATCTACCGGGACCTCATCAGCCATGATGAGATGTTTTCCGACATCTACAAGATCCGGG


20110601C-000028 : AGATCGCGGACGGGCTGTGTCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAGGGTA
                   ---------+---------+---------+---------+---------+---------+ 780
ADR01_0072_B01.b : AGATCGCGGACGGGCTGTGTCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAGGGTA
SMG01_0064_A04.b : AGATCGCGGACGGGCTGTGTCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAGGGTA


20110601C-000028 : ACATTGATGACTCGCTCATTGGTGGAAATGCCTCCGCTGAAGGGCCCGAGGGCGAAGGTA
                   ---------+---------+---------+---------+---------+---------+ 840
ADR01_0072_B01.b : ACATTGATGACTCGCTCATTGGTGGAAATGCCTCCGCTGAAAGGCCCGAGGGCGAAGGTA
SMG01_0064_A04.b : ACATTGATGACTCGCTCATTGGTGGAAATGCCTCCGCTGAAGGGCCCGAGGGCGAAGGTA


20110601C-000028 : CCGAAAGCACAGTAATCACTGGTGTCGATATTGTCATGAACCATCACCTGCAGGAAACCA
                   ---------+---------+---------+---------+---------+---------+ 900
ADR01_0072_B01.b : CCGAAAGCACAGTAATCACTGGTGTCGATATTGTCATGAACCATCACCTGCAGGAAACCA
SMG01_0064_A04.b : CCGAAAGCACAGTAATCACTGGTGTCGATATTGTCATGAAACATCACCTGCAGGAAACCA


20110601C-000028 : GCTTCACAAAGGAAGCCCTACAGAAGTACATCAAAGATTATATGAAAATCAATCAAGGGA
                   ---------+---------+---------+---------+---------+---------+ 960
ADR01_0072_B01.b : GCTTCACAAAGGAAGCCCTACAGAAGTACATCAAAGATTATATGAAAAGTCATCAAGGGA
SMG01_0064_A04.b : GCTTCACAAAGGAAGCCCTACAGAAGTACATCAAAGATTATATGAAAGTCATCAAAGGGA


20110601C-000028 : AAACTCGAGAACAGAGACCCGAAGGAG*TAAACCTTTTATGACAGGAGCTGCAAAACAAA
                   ---------+---------+---------+---------+---------+---------+ 1019
ADR01_0072_B01.b : AANCTCGAGAACAGAGACCCGAANGAGGTAAACCTTTTATGACAGGAGCTGCAGAAACAA
SMG01_0064_A04.b : AAACTCGAGAACNGAGACCGGAAGGAG*TAAACCTTTTATGACAGGAGCTGCAAAACAAA


20110601C-000028 : TCCAGCACATCCTTGCTAATTTCAAAACTATCAGTTCTTTATGGTGGAAACATGAATCCC
                   ---------+---------+---------+---------+---------+---------+ 1079
ADR01_0072_B01.b : TCAAGCcatccttgctatttcaaaaactatcagttccttatggtgaaaactgnatccnga
SMG01_0064_A04.b : ATCAGCACATCCTTGCTAATTTCAAAACTATCAGTTCTTTATGGTGGAAACATGAATCCC


20110601C-000028 : AACGGCATGGT.................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b : cggctggttgcctgctggacacaccgggaaggggggacccctaagagattccttaagagg
SMG01_0064_A04.b : AACGGCATGGTgctctgctggactaccgggagaaggggtgactccaattggatttcttaa


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b : gctaaaaggaaaaagttacaaattggggtgggaagaatatacccgtgtttaaaggggggc
SMG01_0064_A04.b : ggaaggcctaaaaatggaaaaaggtaacaaattggctttgggaatggaattaacacccgt


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b : tggtttctctcaaaaccggatttaaagggggagagggccttgccctttttaaaaattttt
SMG01_0064_A04.b : cctcaaaaggggtgggcattgttttcctccccaaaaccccggaatttaaaaaagggggag


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b : ttg                                                        
SMG01_0064_A04.b : gaggggccctgggccccgttattttaaaattgattttttctttgaacgaaaagctttttt


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b :                                                             
SMG01_0064_A04.b : tttaagaaaaaaaaaattccgggaggggtttccaaaaaaaaaaggctttttactcccaaa


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b :                                                             
SMG01_0064_A04.b : aaaaaaaaaaaaaggcccctgtgtctcacctgcgggggggggcggccccaaaaaaatcct


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b :                                                             
SMG01_0064_A04.b : cctggggggggccatattaatagcaacaaactttttttgtaaaaaagggcccctaatagg


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b :                                                             
SMG01_0064_A04.b : ggggttaataaaaaaaggggggggggggcgcgtttttttaacccccggggggggagaaaa


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b :                                                             
SMG01_0064_A04.b : aatatttcgtgtttgttttttttaagaaaaaaccatctcttttggggggggggggttttg


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b :                                                             
SMG01_0064_A04.b : gccgaccccccccccccccaaatatattactcccgccggagaaaaaaaaaattatttttt


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b :                                                             
SMG01_0064_A04.b : tgggggggggggggggcacccccccccgcccggcgcgccggcgggggggttgttctttct


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b :                                                             
SMG01_0064_A04.b : ccaaaaaaaaaaaaaaaaaaaaaaaaaaccaccccgcgcgcccctcttttctttttgtgt


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b :                                                             
SMG01_0064_A04.b : ttttttttttattaaaaaaaaggggggggggtgttgcccgcccccccccccccctgtgtt


20110601C-000028 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
ADR01_0072_B01.b :                                                             
SMG01_0064_A04.b : gtgtgtattaataaccccaccacctctgtttttttt