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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-000058

Length: 1,057

Sequence [FASTA format sequence]
TGACACGGAA GTGACTACGA ACAGGAAGAG GACGAAAAAA ATAACCGTCC GCGACGCCGA
GCTGAACCGG ACCCGCAGCC ACCATGAACA GCAAAGGTCA ATATCCAACG CAGCCAACCT
ACCCGGTGCA GCCTCCCGGG AATCCTGTGT ACCCTCAGAC CTTGCATCTT CCTCAGGCTC
CACCCTATAC TGATGCTCCA CCTGCCCATT CAGAGCTCTA TCGTCCGAGC TTTGTGCACC
CAGGGGCTGC CACAGTCCCC ACCATGTCAG CTGCATTTCC TGGCGCCTCA CTGTACCTTC
CCATGGCCCA GTCTGTGGCT GTTGGACCTT TAGGTTCCAC AATCCCCATG GCTTATTATC
CAGTTGGTCC CATCTATCCA CCTGGTTCAA CAGTGCTGGT GGAAGGAGGG TATGATACAG
GTGCCAGATT TGGAGCTGGC GCTACTGCTG GCAACATTCC TCCTCCTCCC CCTGGATGCC
CTCCCAATGC TGCTCAGCTG GCAGTCATGC AGGGAGCGAA TGTCCTCGTA ACTCAGCGGA
AGGGAAACTT CTTCATGGGT GGCTCAGATG GCGGCTACAC CATCTGGTGA AGAACCAAGG
CCACCTCTGT GCCGGGAAAG ACGTCACATA CCTTCAGCAC TTCTCACAAT GTAACTGCTT
TAGTCATATT AACCTGAAGT TGCAGTTTAG ACACATGTTG TTGGGGTGTC TTTCTGGTGC
CCAAACTTTC AGGCACTTTT CAAACTTAAT AGGGAACCAT GTAATGGTAG CAGTACCTCC
CCTAAGCATT TTGAGGTAGG GGAGGTATCC ATTCATCAAA TGAATGTGGG TGAAGCAGCC
CCTAGGATCT TCCCTGTATT CCTCTGGGAG TATACTGTAC CATAACTGGT CTTTGCTTTT
AAAAATAAAA CATCAAATTA AGTTTGGAGG GAACTTTGAT CTTCCCTAAA ATTAAAGTTG
CCAATTTATT CTGATTGGGC TTTAACCTCC TTTAAATCTT GGATTTAGGG TACTTGGTAC
AAATGAACTG CATTAACGTG CGGCCTTTTC CTTTTCG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDAZAP2DAZ-associated protein 2 isoform a [Homo sapiens]. 2555e-68O
Contig/Assembly ProteinDAZAP2DAZ-associated protein 2 isoform f [Homo sapiens]. 2017e-52O
Contig/Assembly ProteinDAZAP2DAZ-associated protein 2 isoform b [Homo sapiens]. 1993e-51O
Contig/Assembly ProteinDAZAP2DAZ-associated protein 2 isoform c [Homo sapiens]. 1836e-94O
Contig/Assembly ProteinDAZAP2DAZ-associated protein 2 isoform d [Homo sapiens]. 1741e-43O
Contig/Assembly ProteinDAZAP2DAZ-associated protein 2 isoform e [Homo sapiens]. 68.97e-12O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDazap2DAZ-associated protein 2 [Mus musculus]. 2532e-67O
Contig/Assembly ProteinGm2444PREDICTED: DAZ-associated protein 2-like [Mus musculus]. 2232e-58O
Contig/Assembly ProteinGm2444PREDICTED: DAZ-associated protein 2-like [Mus musculus]. 2232e-58O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC477605PREDICTED: similar to DAZ associated protein 2 isoform 2 [Canis familiaris]. 2532e-67O
Contig/Assembly ProteinLOC477605PREDICTED: similar to DAZ associated protein 2 isoform 1 [Canis familiaris]. 2532e-67O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDAZAP2DAZ-associated protein 2 [Bos taurus]. 2555e-68O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDAZAP2DAZ-associated protein 2 [Sus scrofa]. 2553e-68O


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
AMP010048B07AMP01_0048_B07.bBW958374 
DCI010099G01DCI01_0099_G01.bDB798385 
DCI010101E09DCI01_0101_E09.bDB798549 
KDN010051F09KDN01_0051_F09.bFS674563 

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
207C200.500WNCAT/H
T200.500TAT/Y


Alignment:      TOP

20110601C-000058 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
AMP01_0048_B07.b : tatacctaagggatacttaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
KDN01_0051_F09.b :
DCI01_0101_E09.b : nnnnnccgtaactaaxxxxxxxxxxxxxxxxxxxxxx
DCI01_0099_G01.b : nnntttcgtacttxxxxxxxxxxxxxxxxxxxxx
20110601C-000058 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
AMP01_0048_B07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
KDN01_0051_F09.b :
DCI01_0101_E09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0099_G01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-000058 : ..............................................TGACACGGAAGTGA
---------+---------+---------+---------+---------+---------+ 14
AMP01_0048_B07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGACACGGAAGTGA
KDN01_0051_F09.b : tcacgttggcgctgggaccngagtg
DCI01_0101_E09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0099_G01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-000058 : CTACGAACAGGAAGAGGACGAAAAAAATAACCGTCCGCGACGCCGAGCTGAACCGGACCC
---------+---------+---------+---------+---------+---------+ 74
AMP01_0048_B07.b : CTACGAACAGGAAGAGGACGAAAAAAATAACCGTCCGCGACGCCGAGCTGAACCGGACCC
KDN01_0051_F09.b : actCGAACAGGAAGAGGACGAAAAAAATAACCGTCCCCTTCGCCGAGCTGAACCGGACCC
DCI01_0101_E09.b : xxxxxAACAGGAAGAGGACGAAAAAAATAACCGTCCGCGACGCCGAGCTGAACCGGACCC
DCI01_0099_G01.b : xxxxxAACAGGAAGAGGACGAAAAAAATAACCGTCCGCGACGCCGAGCTGAACCGGACCC
20110601C-000058 : GCAGCCACCATGAACAGCAAAGGTCAATATCCAACGCAGCCAACCTACCCGGTGCAGCCT
---------+---------+---------+---------+---------+---------+ 134
AMP01_0048_B07.b : GCAGCCACCATGAACAGCAAAGGTCAATATCCAACGCAGCCAACCTACCCGGTGCAGCCT
KDN01_0051_F09.b : GCAGCCACCATGAACAGCAAAGGTCAATATCCAACGCAGCCAACCTACCCGGTGCAGCCT
DCI01_0101_E09.b : GCAGCCACCATGAACAGCAAAGGTCAATATCCAACGCAGCCAACCTACCCGGTGCAGCCT
DCI01_0099_G01.b : GCAGCCACCATGAACAGCAAAGGTCAATATCCAACGCAGCCAACCTACCCGGTGCAGCCT
20110601C-000058 : CCCGGGAATCCTGTGTACCCTCAGACCTTGCATCTTCCTCAGGCTCCACCCTATACTGAT
---------+---------+---------+---------+---------+---------+ 194
AMP01_0048_B07.b : CCCGGGAATCCTGTGTACCCTCAGACCTTGCATCTTCCTCAGGCTCCACCCTATACTGAT
KDN01_0051_F09.b : CCCGGGAATCCTGTGTACCCTCAGACCTTGCATCTTCCTCAGGCTCCACCCTATACTGAT
DCI01_0101_E09.b : CCCGGGAATCCTGTGTACCCTCAGACCTTGCATCTTCCTCAGGCTCCACCCTATACTGAT
DCI01_0099_G01.b : CCCGGGAATCCTGTGTACCCTCAGACCTTGCATCTTCCTCAGGCTCCACCCTATACTGAT
20110601C-000058 : GCTCCACCTGCCCATTCAGAGCTCTATCGTCCGAGCTTTGTGCACCCAGGGGCTGCCACA
---------+---------+---------+---------+---------+---------+ 254
AMP01_0048_B07.b : GCTCCACCTGCCTATTCAGAGCTCTATCGTCCGAGCTTTGTGCACCCAGGGGCTGCCACA
KDN01_0051_F09.b : GCTCCACCTGCCTATTCAGAGCTCTATCGTCCGAGCTTTGTGCACCCAGGGGCTGCCACA
DCI01_0101_E09.b : GCTCCACCTGCCCATTCAGAGCTCTATCGTCCGAGCTTTGTGCACCCAGGGGCTGCCACA
DCI01_0099_G01.b : GCTCCACCTGCCCATTCAGAGCTCTATCGTCCGAGCTTTGTGCACCCAGGGGCTGCCACA
20110601C-000058 : GTCCCCACCATGTCAGCTGCATTTCCTGGCGCCTCACTGTACCTTCCCATGGCCCAGTCT
---------+---------+---------+---------+---------+---------+ 314
AMP01_0048_B07.b : GTCCCCACCATGTCAGCTGCATTTCCTGGCGCCTCACTGTACCTTCCCATGGCCCAGTCT
KDN01_0051_F09.b : GTCCCCACCATGTCAGCTGCATTTCCTGGCGCCTCACTGTACCTTCCCATGGCCCAGTCT
DCI01_0101_E09.b : GTCCCCACCATGTCAGCTGCATTTCCTGGCGCCTCACTGTACCTTCCCATGGCCCAGTCT
DCI01_0099_G01.b : GTCCCCACCATGTCAGCTGCATTTCCTGGCGCCTCACTGTACCTTCCCATGGCCCAGTCT
20110601C-000058 : GTGGCTGTTGGACCTTTAGGTTCCACAATCCCCATGGCTTATTATCCAGTTGGTCCCATC
---------+---------+---------+---------+---------+---------+ 374
AMP01_0048_B07.b : GTGGCTGTTGGACCTTTAGGTTCCACAATCCCCATGGCTTATTATCCAGTTGGTCCCATC
KDN01_0051_F09.b : GTGGCTGTTGGACCTTTAGGTTCCACAATCCCCATGGCTTATTATCCAGTTGGTCCCATC
DCI01_0101_E09.b : GTGGCTGTTGGACCTTTAGGTTCCACAATCCCCATGGCTTATTATCCAGTTGGTCCCATC
DCI01_0099_G01.b : GTGGCTGTTGGACCTTTAGGTTCCACAATCCCCATGGCTTATTATCCAGTTGGTCCCATC
20110601C-000058 : TATCCACCTGGTTCAACAGTGCTGGTGGAAGGAGGGTATGATACAGGTGCCAGATTTGGA
---------+---------+---------+---------+---------+---------+ 434
AMP01_0048_B07.b : TATCCACCTGGTTCAACAGTGCTGGTGGAAGGAGGGTATGATACAGGTGCCAGATTTGGA
KDN01_0051_F09.b : TATCCACCTGGTTCAACAGTGCTGGTGGAAGGAGGGTATGATACAGGTGCCAGATTTGGA
DCI01_0101_E09.b : TATCCACCTGGTTCAACAGTGCTGGTGGAAGGAGGGTATGATACAGGTGCCAGATTTGGA
DCI01_0099_G01.b : TATCCACCTGGTTCAACAGTGCTGGTGGAAGGAGGGTATGATACAGGTGCCAGATTTGGA
20110601C-000058 : GCTGGCGCTACTGCTGGCAACATTCCTCCTCCTCCCCCTGGATGCCCTCCCAATGCTGCT
---------+---------+---------+---------+---------+---------+ 494
AMP01_0048_B07.b : GCTGGCGCTACTGCTGGCAACATTCCTCCTCCTCCCCCTGGATGCCCTCCCAATGCTGCT
KDN01_0051_F09.b : GCTGGCGCTACTGCTGGCAACATTCCTCCTCCTCCCCCTGGATGCCCTCCCAATGCTGCT
DCI01_0101_E09.b : GCTGGCGCTACTGCTGGCAACATTCCTCCTCCTCCCCCTGGATGCCCTCCCAATGCTGCT
DCI01_0099_G01.b : GCTGGCGCTACTGCTGGCAACATTCCTCCTCCTCCCCCTGGATGCCCTCCCAATGCTGCT
20110601C-000058 : CAGCTGGCAGTCATGCAGGGAGCGAATGTCCTCGTAACTCAGCGGAAGGGAAACTTCTTC
---------+---------+---------+---------+---------+---------+ 554
AMP01_0048_B07.b : CAGCTGGCAGTCATGCAGGGAGCGAATGTCCTCGTAACTCAGCGGAAGGGAAACTTCTTC
KDN01_0051_F09.b : CAGCTGGCAGTCATGCAGGGAGCGAATGTCCTCGTAACTCAGCGGAAGGGAAACTTCTTC
DCI01_0101_E09.b : CAGCTGGCAGTCATGCAGGGAGCGAATGTCCTCGTAACTCAGCGGAAGGGA*ACTTCTTC
DCI01_0099_G01.b : CAGCTGGCAGTCATGCAGGGAGCGAATGTCCTCGTAACTCAGCGGAAGGGAAACTTCTTC
20110601C-000058 : ATGGGTGGCTCAGATGGCGGCTACACCATCTGGTGAAGAACCAAGGCCACCTCTGTGCCG
---------+---------+---------+---------+---------+---------+ 614
AMP01_0048_B07.b : ATGGGTGGCTCAGATGGCGGCTACACCATCTGGTGAAGAACCAAGGCCACCTCTGTGCCG
KDN01_0051_F09.b : ATGGGTGGCTCAGATGGCGGCTACACCATCTGGTGAAGAACCAAGGCCACCTCTGTGCCG
DCI01_0101_E09.b : ATGGGTGGCTCAGATGGCGGCTACACCATCTGGTGAAGAACCAANGGGCACTCTGTGCCG
DCI01_0099_G01.b : ATGGGTGGCTCAGATGGCGGCTACACCATCTGGTGAAGAACCAAGGCCACCTCTGTGCCG
20110601C-000058 : GGAAAGACGTCACATACCTTCAGCACTTCTCACAATGTAACTGCTTTAGTCATATTAACC
---------+---------+---------+---------+---------+---------+ 674
AMP01_0048_B07.b : GGAAAGACGTCACATACCTTCAGCACTTCTCACAATGTAACTGCTTTAGTCATATTAACC
KDN01_0051_F09.b : GGAAAGACGTCACATACCTTCAGCACTTCTCACAATGTAACTGCTTTAGTCATATTAACC
DCI01_0101_E09.b : GAAAAGGCGTCACATACCTTCAGCACTTCTCANCATGTAACTGCTTTAGTCATATTACCC
DCI01_0099_G01.b : GGAAAGGCGTCACATACCTTCAGCACTTCTCACAATGTAACTGCTTTAGTCATATTAACC
20110601C-000058 : TGAAGTTGCAGTTTAGACACATGTTGTTGGGGTGTCTTTCTGG*TGCCCAAACTTTCAGG
---------+---------+---------+---------+---------+---------+ 733
AMP01_0048_B07.b : TGAAGTTGCAGTTTAGACACATGTTGTTGGGGTGTCTTTCTGGGTGCCCAAACTTTCATG
KDN01_0051_F09.b : TGAAGTTGCAGTTTAGACACATGTTGTTGGGGTGTCTTTCTGG*TGCCCAAACTTTCAGG
DCI01_0101_E09.b : TGAAGTgcagtttaaaacatgttgtggggtgtctttctgtgcccaaacttcaagcacttt
DCI01_0099_G01.b : TGAAGTTGCAGTTTAGACACATGTTGTTGGGGTGTCTTTCTGG*TGCCCAAACTTTCAGG
20110601C-000058 : CAC*TTTTCAAACTTAATAGGGAACCATGTAATGG*TAGCAGTACCTCCCCTAAGCATTT
---------+---------+---------+---------+---------+---------+ 791
AMP01_0048_B07.b : CAC*TTTTCAAACTTATAAAGGAACCATGTAATGGGTAGCACTCCCTCCCCTAAGCATTT
KDN01_0051_F09.b : CAC*TTTTCAAACTTAATAAGGAACCATGTAATGG*TAGCAGTACCTCCCCTAAGCATTT
DCI01_0101_E09.b : tcaactattaggaacatgtatggtagagtacctcctaaagcatttgaggtagggagtatc
DCI01_0099_G01.b : CACNTTTTTCAACTTTATAGGAACCCATGTATGG**TAGCAGTACCTCCCNTAAGCATTT
20110601C-000058 : TGAGGTAGGGGAGGTATCCATTCATCAAATGAAT*GTGGGTGAAGCAGCCCCTAGGATCT
---------+---------+---------+---------+---------+---------+ 850
AMP01_0048_B07.b : GGAGGTAGGGGAGGTATCCCTTTCTCAAATGGATTGGGGGTGACGCCCCCCTAAGGATCT
KDN01_0051_F09.b : TGAGGTAGGGGAGGTATCCATTCATCAAATGAAT*GTGGGTGAAGCAGCCCCTAGGATCT
DCI01_0101_E09.b : cattctcaatgatgtgggtgagcagccctaggatcttctgtaatcctcggagaaactgaa
DCI01_0099_G01.b : TGAGGTAGGGGAAGTATCCATTCATCAAATGAAT*GTGGGTGAAGCAGCCCCTAGGATCT
20110601C-000058 : TCCCTGTATTCCTCTGGGAGTATACTGTACCATAACTGGTCTTTGCTTTTAAAAATAAAA
---------+---------+---------+---------+---------+---------+ 910
AMP01_0048_B07.b : TCCCTGAATTCCCCTGGAGTAATACCGAACCCTC*CGGGCCTTTGCTTTTAAAAATAAAA
KDN01_0051_F09.b : TCCCTGTATTCCTCTGGGAGTATACTGTACCATAACTGGTCTTTGCTTTTAGTAATAAAC
DCI01_0101_E09.b : ctactggcttgctttagaaaaaactcaattagttggaaggacttgatctcctaaataaag
DCI01_0099_G01.b : TCCCTGTATTCCTCTGGNAGTATACTGTACCATA*CTGGTCTTTGCTTNNTAGTATAAAA
20110601C-000058 : CATCAAATTAAGTTTGGAGGGAACTTTGATCTTCCCTAAAATTAAAGTTGCCAATTTATT
---------+---------+---------+---------+---------+---------+ 970
AMP01_0048_B07.b : CATCC*AATTgaggttggaagggacctttcaccttcccaaaaattaaagttgcccaaata
KDN01_0051_F09.b : CATCA*ATTAGGTTTGGAGGGAACTTTGATCTTCCCTAAAATTAAAGTTGCCAATTTATT
DCI01_0101_E09.b : tgcaantatccgaatgcctaatctcctaagcctgattagtactggtcaagacggttacgt
DCI01_0099_G01.b : CATCAAATTAAGTTGTGAGGGAACTTNGATCNNTCCTAGAAtnnaaggtgccnnaataat
20110601C-000058 : CTGATTGGGCTTTAACCTCCTTTAAATCTTGGATTTAGGGTACTTGGTACAAATGAACTG
---------+---------+---------+---------+---------+---------+ 1030
AMP01_0048_B07.b : ttcggaatggccctcacccccctttaaaccttgggattatggtacctggtaacaaaggaa
KDN01_0051_F09.b : CTGATTGGGCTTTAACCTCCTTTAAATCTTGGATTTAGGGTACTTGGTACAAATGAACTG
DCI01_0101_E09.b : gcgcttccttccgcttgcccggttcacctacccggcttaaactccccattcctgacaggg
DCI01_0099_G01.b : cnngatggnncttaaacccccttaaagcctttgaattaaggtacatgttacaaaggaaac
20110601C-000058 : CATTAACGTGCGGCCTTTTCCTTTTCG.................................
---------+---------+---------+---------+---------+---------+ 1057
AMP01_0048_B07.b : ccggcataacccgtctccccttttcctttttggcccttggcccagagttcccaccccggg
KDN01_0051_F09.b : CATTAACGTGCGGCCTTTTCCTTTTCGcctttgccccaggttcccccctcaccccggtct
DCI01_0101_E09.b : gggaaaaccccaaaatttctccctgcttgcccccgctttacggttaaggtcgaaaccggg
DCI01_0099_G01.b : ggcataactggccgccctttcctttttcgcccttggccccaggtccccccccagcccggg
20110601C-000058 : ............................................................
---------+---------+---------+---------+---------+---------+ 1057
AMP01_0048_B07.b : cccggggttttttaacccttcccccccaattccattggaga
KDN01_0051_F09.b : tcaaaaccttccccccaaccccatttaatcaagggggccagaaaaaaacccatccaaaaa
DCI01_0101_E09.b : caaaacccttttttttttttggaaaggggttgccccgg
DCI01_0099_G01.b : gttttgaaactttcgccacattccttgtaacaatgggcggggacaaaaccgttcaaaaaa
20110601C-000058 : ............................................................
---------+---------+---------+---------+---------+---------+ 1057
AMP01_0048_B07.b :
KDN01_0051_F09.b : atttcctcccccttggcttggcccccccgcacctttaaacatcttttcaaggatccttaa
DCI01_0101_E09.b :
DCI01_0099_G01.b : tttctttcc
20110601C-000058 : ............................................................
---------+---------+---------+---------+---------+---------+ 1057
AMP01_0048_B07.b :
KDN01_0051_F09.b : aaccccttgtgccaagaaaacccccttaattggttttgcccctttagaaaaggggaaggg
DCI01_0101_E09.b :
DCI01_0099_G01.b :
20110601C-000058 : ............................................................
---------+---------+---------+---------+---------+---------+ 1057
AMP01_0048_B07.b :
KDN01_0051_F09.b : cctttggaccccttgtaggttcttttacaaacaacacccaattttgttgggcacaaaaat
DCI01_0101_E09.b :
DCI01_0099_G01.b :
20110601C-000058 : ............................................................
---------+---------+---------+---------+---------+---------+ 1057
AMP01_0048_B07.b :
KDN01_0051_F09.b : actcttcaaagaaaaccacaaatataaaaaccctttcttctctggggggaagaggtttta
DCI01_0101_E09.b :
DCI01_0099_G01.b :