[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-000610
Length:
835
Sequence:
[FASTA format sequence]
GAGTCGTGTT CCGGGAACAA GCTGAAAGGA GCCTGAACAT GACTTCGTTG GAGGCTTTGA
AATTCTTACA GACAGGTCAT ACCTGCAGAG AAAGCATGTC TGAAGGGCAA TCTGGGGAGG
ATCTCCAAAG AAAATGTCTA TCCATTACAT CTCTACCTTT TCCCAAGCTT GCTTGTTTCA
TCATCCCTAT GGCAGTCTTA GCTGCAGCTG TGATTGCACT TTCCACTTTT TTGGCAGGTA
AGTGACGTGT GCTCCACACT TGACAATGTT CTTCACACAT TTATGTTGTC AATAAATATT
TATTGAGCTC CACTCTGTGC CAGCCCCTGC GTGATGTTCT TGAGTTATAC CCATGAACAA
TATACACACA AAAAATCCCT ACTCCCAGGG AATTTATATT CTGGCAGGAT GACACAGATC
CTGTAAATAA AGCAGAGATG GAATAAATTG TGGTAGACAT AGAGTGGCCA GGGTAAGCCT
GCTTGAGGGG ACACCCTTTC AGCAAATGTT TGAAGGAGCC ATGTGGCTGT CTGGAGAAAG
CATTCTGGAC CAAGTAGAAT CACCTCTGCA TGTCTGAGGA ACAGCAAGAT GAGAGGGAGG
GAACTAAAGC AAGATGAGAA TGCGGAAGAG TAATAAGCTG GGGGTCAGGA AGGTAATGAC
TTAATCATAG CTTTTGGAGT CAGTTAAAGA TCTTGGCATT TATTTTGAAA TGTAGTGGAG
GACCATCAGG AAAGGGAAAG TGATAGGAGA GGAAAGTCCT GATGTGACTG TCATTGTTAG
ATAATCCTTT TAACTGATGT ATTGAGAATG CATTGTTAGA AGGAAAGGGT CAAAC
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | LOC100521013 | PREDICTED: c-type lectin domain family 2 member H-like isoform 2 [Sus scrofa]. | 130 | 7e-31 | O |
|
| LOC100521013 | PREDICTED: c-type lectin domain family 2 member H-like isoform 1 [Sus scrofa]. | 130 | 7e-31 | O |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||
20110601C-000610 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
ILNT1_0070_E10.b :
AMP01_0096_B05.b : ggggataactcnxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0072_E08.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnxxxxxxxxxxx
THY01_0046_C06.b :
20110601C-000610 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
ILNT1_0070_E10.b : nnnccgctag
AMP01_0096_B05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0072_E08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0046_C06.b : txxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-000610 : ...................................................GAGTCGTGT
---------+---------+---------+---------+---------+---------+ 9
ILNT1_0070_E10.b : tacgaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGTCGTGT
AMP01_0096_B05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTCGTGT
AMP01_0072_E08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTCGTGT
THY01_0046_C06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGT
20110601C-000610 : TCCGGGAACAAGCTGAAAGGAGCCTGAACATGACTTCGTTGGAGGCTTTGAAATTCTTAC
---------+---------+---------+---------+---------+---------+ 69
ILNT1_0070_E10.b : TCCGGGAACAAGCTGAAAGGAGCCTGAACATGACTTCGTTGGAGGCTTTGAAATTCTTAC
AMP01_0096_B05.b : TCCGGGAACAAGCTGAAAGGAGCCTGAACATGACTTCGTTGGAGGCTTTGAAATTCTTAC
AMP01_0072_E08.b : TCCGGGAACAAGCTGAAAGGAGCCTGAACATGACTTCGTTGGAGGCTTTGAAATTCTTAC
THY01_0046_C06.b : TCCGGGAACAAGCTGAAAGGAGCCTGAACATGACTTCGTTGGAGGCTTTGAAATTCTTAC
20110601C-000610 : AGACAGGTCATACCTGCAGAGAAAGCATGTCTGAAGGGCAATCTGGGGAGGATCTCCAAA
---------+---------+---------+---------+---------+---------+ 129
ILNT1_0070_E10.b : AGACAGGTCATACCTGCAGAGAAAGCATGTCTGAAGGGCAATCTGGGGAGGATCTCCAAA
AMP01_0096_B05.b : AGGCAGGTCATACCTGCAGAGAAAGCATGTCTGAAGGGCAATCTGGGGAGGATCTCCAAA
AMP01_0072_E08.b : AGGCAGGTCATACCTGCAGAGAAAGCATGTCTGAAGGGCAATCTGGGGAGGATCTCCAAA
THY01_0046_C06.b : AGACAGGTCATACCTGCAGAGAAAGCATGTCTGAAGGGCAATCTGGGGAGGATCTCCAAA
20110601C-000610 : GAAAATGTCTATCCATTACATCTCTACCTTTTCCCAAGCTTGCTTGTTTCATCATCCCTA
---------+---------+---------+---------+---------+---------+ 189
ILNT1_0070_E10.b : GAAAATGTCTATCCATTACATCTCTACCTTTTCCCAAGCTTGCTTGTTTCATCATCCCTA
AMP01_0096_B05.b : GAAAATGTCTATCCATTACATCTCTACCTTTTCCCAAGCTTGCTTGTTTCATCATCCCTA
AMP01_0072_E08.b : GAAAATGTCTATCCATTACATCTCTACCTTTTCCCAAGCTTGCTTGTTTCATCATCCCTA
THY01_0046_C06.b : GAAAATGTCTATCCATTACATCTCTACCTTTTCCCAAGCTTGCTTGTTTCATCATCCCTA
20110601C-000610 : TGGCAGTCTTAGCTGCAGCTGTGATTGCACTTTCCACTTTTTTGGCAGGTAAGTGACGTG
---------+---------+---------+---------+---------+---------+ 249
ILNT1_0070_E10.b : TGGCAGTCTTAGCTGCAGCTGTGATTGCACTTTCCACTTTTTTGGCAGGTAAGTGACGTG
AMP01_0096_B05.b : TGGCAGTCTTAGCTGCAGCTGTGATTGCACTTTCCACTTTTTTGGCAGGTAAGTGACGTG
AMP01_0072_E08.b : TGGCAGTCTTAGCTGCAGCTGTGATTGCACTTTCCACTTTTTTGGCAGGTAAGTGACGTG
THY01_0046_C06.b : TGGCAGTCTTAGCTGCAGCTGTGATTGCACTTTCCACTTTTTTGGCAGGTAAGCGACGTG
20110601C-000610 : TGCTCCACACTTGACAATGTTCTTCACACATTTATGTTGTCAATAAATATTTATTGAGCT
---------+---------+---------+---------+---------+---------+ 309
ILNT1_0070_E10.b : TGCTCCACACTTGACAATGTTCTTCACACATTTATGTTGTCAATAAATATTTATTGAGCT
AMP01_0096_B05.b : TGCTCCACACTTGACAATGTTCTTCACAcatttatgttgtcaataaatatttattgagct
AMP01_0072_E08.b : TGCTCCACACTTGACAATGTTCTTCACAcatttatgttgtcaataaatatttattgagct
THY01_0046_C06.b : TGCTCCACACTTGACAATGTTCTTCACAcatttatgttgtcaataaatatttattgagct
20110601C-000610 : CCACTCTGTGCCAGCCCCTGCGTGATGTTCTTGAGTTATACCCATGAACAATATACACAC
---------+---------+---------+---------+---------+---------+ 369
ILNT1_0070_E10.b : CC
AMP01_0096_B05.b : ccactctgtgccagcccctgcgtgatgttcttgagttatacccatgaacaatatacacac
AMP01_0072_E08.b : ccactctgtgccagcccctgcgtgatgttcttgagttatacccatgaacaatatacacac
THY01_0046_C06.b : ccactctgtgccagcccctgcgtgatgttcttgagttatacccatgaacaatatacacac
20110601C-000610 : AAAAAATCCCTACTCCCAGGGAATTTATATTCTGGCAGGATGACACAGATCCTGTAAATA
---------+---------+---------+---------+---------+---------+ 429
ILNT1_0070_E10.b :
AMP01_0096_B05.b : aaaaaatccctactcccagggaatttatattctggcaggatgacacagatcctgtaaata
AMP01_0072_E08.b : aaaaaatccctactcccagggaatttatattctggcaggatgacacagatcctgtaaata
THY01_0046_C06.b : aaaaaatccctactcccagggaatttatattctggcaggatgacacagatcctgtaaata
20110601C-000610 : AAGCAGAGATGGAATAAATTGTGGTAGACATAGAGTGGCCAGGGTAAGCCTGCTTGAGGG
---------+---------+---------+---------+---------+---------+ 489
ILNT1_0070_E10.b :
AMP01_0096_B05.b : aaGCAGAGATGGAATAAATTGTGGTAGACATAGAGTGGCCAGGGTAAGCCTGCTTGAGGG
AMP01_0072_E08.b : aaGCAGAGATGGAATAAATTGTGGTAGACATAGAGTGGCCAGGGTAAGCCTGCTTGAGGG
THY01_0046_C06.b : aaGCAGAGATGGAATAAATTGTGGTAGACatagagtggccagggtaagcctgcttgaggg
20110601C-000610 : GACACCCTTTCAGCAAATGTTTGAAGGAGCCATGTGGCTGTCTGGAGAAAGCATTCTGGA
---------+---------+---------+---------+---------+---------+ 549
ILNT1_0070_E10.b :
AMP01_0096_B05.b : GACACCCTTTCAGCAAATGTTTGAAGGAGCCATGTGGCTGTCTGGAGAAAGCATTCTGGA
AMP01_0072_E08.b : GACACCCTTTCAGCAAATGTTTGAAGGAGCCATGTGGCTGTCTGGAGAAAGCATTCTGGA
THY01_0046_C06.b : gacaccctttcagcaaatgtttgaaggagCCATGTGGCTGTCTGGAGAAAGCATTCTGGA
20110601C-000610 : CCAAGTAGAATCACCTCTGCATGTCTGAGGAACAGCAAGATGAGAGGGAGGGAACTAAAG
---------+---------+---------+---------+---------+---------+ 609
ILNT1_0070_E10.b :
AMP01_0096_B05.b : CCNAGTAGAATCACCTCTGCATGTCTGAAGAACAGCAAGATGAGAGGGAGGGGACTAAAG
AMP01_0072_E08.b : CCAAGTAGAATCACCTCTgcatgtctgaggaacagcaagatgagagggagggaactaaag
THY01_0046_C06.b : CCAAGTAGAATCACCTCTgcatgtctgaggaacagcaagatgagagggagggaactaaag
20110601C-000610 : CAAGATGAGAATGCGGAAGAGTAATAAGCTGGGGGTCAGGAAGGTAATGACTTAATCATA
---------+---------+---------+---------+---------+---------+ 669
ILNT1_0070_E10.b :
AMP01_0096_B05.b : CAAGATGAGAATGCGGAGGAAGTATAAGCTGGGGGGTCAAGAGGTAATGACTTAATCATA
AMP01_0072_E08.b : caagatgagaatgcggaagagtaataagctgggggtcaggaaggtaatgacttaatcata
THY01_0046_C06.b : caagatgagaatgcggaagagtaataagctgggggtcaggaaggtaatgacttaatcata
20110601C-000610 : GCTTTTGGAGTCAGTTAAAGATCTTGGCATTTATTTTGAAATGTAGTGGAGGACCATCAG
---------+---------+---------+---------+---------+---------+ 729
ILNT1_0070_E10.b :
AMP01_0096_B05.b : GCTTTTGGAGTCAGTTAAGGATCTTGGCATTATTTTTGAAtgtagtggaggacatcnagg
AMP01_0072_E08.b : gcttttggagtcagttaaagatcttggcatttattttgaaatgtagtggaggaccatcan
THY01_0046_C06.b : gcttttggagtcagttaaagatcttggcatttattttgaaatgtagtggaggaccatcag
20110601C-000610 : GAAAGGGAAAGTGATAGGAGAGGAAAGTCCTGATGTGACTGTCATTGTTAGATAATCCTT
---------+---------+---------+---------+---------+---------+ 789
ILNT1_0070_E10.b :
AMP01_0096_B05.b : aaaggaaagtgatggaagaggaagtcctgatgtgactgtcattggtaattatccttttta
AMP01_0072_E08.b : ngaaggg*aagtgataggagaggaaagtcctgatgtgactgtcatttgtagataatcctt
THY01_0046_C06.b : gaaagggaaagtgataggagaggaaagccctgatgtgactgtcattgttagataatcctt
20110601C-000610 : TTAACTGATGTATTGAGAATGCATTGTTAGAAGGAAAGGGTCAAAC..............
---------+---------+---------+---------+---------+---------+ 835
ILNT1_0070_E10.b :
AMP01_0096_B05.b : ctgatgtattgaaaatgcattgttgaaggaaagggtcaaacagggattgcccctgaggtc
AMP01_0072_E08.b : tna*ctgatgtattgagaatgcatttgtagaaagaaagggtcaaacaggatgcccccctg
THY01_0046_C06.b : ttaactgatgtattgagaatgcattgttagaaggaaagggtcaaaccagggatgccccct
20110601C-000610 : ............................................................
---------+---------+---------+---------+---------+---------+ 835
ILNT1_0070_E10.b :
AMP01_0096_B05.b : agtctcttaaaattcagcctgactggggctggcagggggaaaggggttgcaaaagccgga
AMP01_0072_E08.b : agtcagtctcgtaaaatcccagctgactgtggctggcagtggggacgggttgtcaaatnc
THY01_0046_C06.b : gaggtcagtctcgtagaaatccaggcctgaatgtggcttggcaggtgggacagggttgtc
20110601C-000610 : ............................................................
---------+---------+---------+---------+---------+---------+ 835
ILNT1_0070_E10.b :
AMP01_0096_B05.b : aatttgcaagcttgatcaacggatttactaaacaatttggaaagggagaaaaagtccaat
AMP01_0072_E08.b : tgatatttccagctgagtcacgtattccttacnattggaaagggagaaaantcgatgggg
THY01_0046_C06.b : aaatgctggatattttgcaagctgagtcaaccgtatttactaacgaattggaaaagggag
20110601C-000610 : ............................................................
---------+---------+---------+---------+---------+---------+ 835
ILNT1_0070_E10.b :
AMP01_0096_B05.b : tgtggaacaaaaaaaatctatttctcccccaccccacactctgaaaactttgccaggtgc
AMP01_0072_E08.b : acaaaacatcatcttcccccctaacctctaaactgtgggtggaaaattgcaagaccaaat
THY01_0046_C06.b : gaaaaagccaaaatggggaaaaaaaaacattttattttttccccagcccaacctctcgaa
20110601C-000610 : ............................................................
---------+---------+---------+---------+---------+---------+ 835
ILNT1_0070_E10.b :
AMP01_0096_B05.b : ccaaaattttgaaaaggaccccaaaatttttccatacctatttttaaaaaaaaaatattc
AMP01_0072_E08.b : tgcttcttttgcgaaatttaaacaaaaccgggacccctggtctggcacccaattaaggtt
THY01_0046_C06.b : attcttggcaggttgcaaaaaaatcctgacaaggaccacaaaattttgcaataactattt
20110601C-000610 : ............................................................
---------+---------+---------+---------+---------+---------+ 835
ILNT1_0070_E10.b :
AMP01_0096_B05.b : aaaaaaaaaaaaaaaccaacaggaaaaccccccaccttttttttttttttggtggtaaca
AMP01_0072_E08.b : tttgtgctaattaaccccgaggcaccaaccaaagaaggctttataaaaaaattttgcgaa
THY01_0046_C06.b : tttaaaaaaaaattttgaaaaaaaaaaaaaaaaattaaacgggaaaaaccccttaatttt
20110601C-000610 : ............................................................
---------+---------+---------+---------+---------+---------+ 835
ILNT1_0070_E10.b :
AMP01_0096_B05.b : aaaacccccctcaaatttttttaataggggtggtgtgtgtttgtttttt
AMP01_0072_E08.b : caaaaaggatcccctaaaaccgggggggggggtggggggnccccccccccccccccnnnn
THY01_0046_C06.b : gttattttttttggggaaataaaaaacctctccaaattttttttaaagtgtn
20110601C-000610 : ............................................................
---------+---------+---------+---------+---------+---------+ 835
ILNT1_0070_E10.b :
AMP01_0096_B05.b :
AMP01_0072_E08.b : ttaaacgtgccgcggcgcccgccgccccgccccct
THY01_0046_C06.b :
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