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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-000645

Length: 1,117

Sequence:  [FASTA format sequence]
GTAGCCACCT CTGTCGCTGC GGAGCTGCTT GTCTCCGGTT GCTGCTGAGC CGCGTTCGGA
GCCCTGCCGA GGAGGCTGCA GCCGTAGCCA GGAGCCCGCA GCCCGCGCCC GAGCCCGCAG
CCGCCGCCGA GGGCGCCCCA GGCCGCGCCA TGGTGAAGGT GACGTTCAAC TCGGCTCTGG
CCCAGAAGGA GGCCAAGAAG GACGAGCCCA AGAGCGGAGA GGAGGCGCTC ATCATCCCCC
CCGACACCGT CGCGGTGGAC TGCAAGGACC CAGATGAAGT GGTACCAGTT GGCCAAAGAA
GAGCCTGGTG TTGGTGCATG TGCTTTGGCC TGGCATTTAT GCTTGCAGGT GTCATTCTAG
GAGGAGCATA CCTGTACAAA TATTTTGCAC TTCAACCAGA TGACGTCTAC TATTGTGGAA
TAAAGTACAT CAAGGATGAT GTCATCTTAA ATGAGCCTCC TGCGAACGCC CCTGCCGCCC
GCTACCAGAC CATCGAGGAA AATATTAAGA TCTTCGAGGA AGATGGGGTC GAGTTCATCA
GCGTGCCTGT CCCAGAGTTT GCGGACAGCG ACCCTGCCAA CATTGTGCAT GACTTTAACA
AGAAACTCAC GGCTTATTTA GATCTTAACC TGGATAAGTG CTATGTGATT CCTCTGAACA
CTTCCATTGT TATGCCACCC AGAAACCTAC TGGAGTTACT TATTAACATA AAGGCTGGGA
CCTACCTGCC TCAGTCCTAT TTGATCCATG AACACATGGT CATCACTGAT CGCATTGAAA
ACATCGATCA CCTGGGCTTC TATATTTATC GACTGTGCCC ATGACAGGAA ACTTACAAAC
TGCAGCGCAA AGAAACCGTT AAAGGTATTC AGAAACGTGA AGCCAGCAAT TGTGCTACGA
TTCGGCATTT TGAAAACAAA TTTGCCGTCG AAACTTTAAT TTGTTCTTTA ACAGTTCAGA
AAACATTATG GAGGAAAACT TAATACCCAG CATAATAACC CCACCCTTTG GAATTTGTGC
AGTGATTATT TTTTAAAATC TTCTTTCATG TAAGTAGCAA ACAGGGCTTC ACTATCTTTT
CATCCCATGA TTCCAATAAA ACCATTACCT TTTAAAA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		ITM2B	integral membrane protein 2B [Homo sapiens].	517	e-147	O
		ITM2C	integral membrane protein 2C isoform 1 [Homo sapiens].	214	1e-55	O
		ITM2A	integral membrane protein 2A isoform 1 [Homo sapiens].	201	8e-52	O
		ITM2C	integral membrane protein 2C isoform 3 [Homo sapiens].	194	2e-49	O
		ITM2A	integral membrane protein 2A isoform 2 [Homo sapiens].	169	6e-42	O
		ITM2C	integral membrane protein 2C isoform 2 [Homo sapiens].	143	2e-34	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Itm2b	integral membrane protein 2B [Mus musculus].	513	e-145	O
		Itm2c	integral membrane protein 2C [Mus musculus].	211	6e-55	O
		Itm2a	integral membrane protein 2A [Mus musculus].	199	2e-51	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC476916	PREDICTED: similar to integral membrane protein 2B [Canis familiaris].	446	e-125	O
		LOC486156	PREDICTED: similar to Integral membrane protein 2C (Transmembrane protein BRI3) (Cerebral protein-14) isoform 2 [Canis familiaris].	216	3e-56	O
		LOC486156	PREDICTED: similar to integral membrane protein 2C isoform 3 isoform 4 [Canis familiaris].	196	3e-50	O
		LOC486156	PREDICTED: similar to integral membrane protein 2C isoform 2 isoform 3 [Canis familiaris].	145	7e-35	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		ITM2B	integral membrane protein 2B [Bos taurus].	510	e-145	O
		ITM2C	integral membrane protein 2C [Bos taurus].	222	5e-58	O
		LOC100296890	PREDICTED: hypothetical protein [Bos taurus].	115	7e-26	O
		LOC100296890	PREDICTED: hypothetical protein [Bos taurus].	115	7e-26	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		ITM2B	integral membrane protein 2B [Sus scrofa].	535	e-152	O
		ITM2C	integral membrane protein 2C [Sus scrofa].	218	5e-57	O
		ITM2A	integral membrane protein 2A [Sus scrofa].	194	7e-50	O

Alignment:      TOP

20110601C-000645 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
ITT01_0028_D02.b :                    nnggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRT1_0068_H05.b : ngggattcgtttgcgaacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PST01_0039_H01.b :                                                     ttttgtcg
OVRM1_0170_A07.b :                                                             


20110601C-000645 : ..............GTAGCCACCTCTGTCGCTGCGGAGCTGCTTGTCTCCGGTTGCTGCT
                   ---------+---------+---------+---------+---------+---------+ 46
ITT01_0028_D02.b : xxxxxxxxxxxxxxGTAGCCACCTCTGTCGCTGCGGAGCTGCTTGTCTCCGGTTGCTGCT
OVRT1_0068_H05.b : xxxxxxxxxxxxxxGTAGCCACCTCTGTCGCTGCGGAGCTGCTTGTCTCCGGTAGCTGCT
PST01_0039_H01.b : ctgtggctctggagcgtancCCCTCTGTCGCTGCGGAGCTGCTTGTCTCCGGTTGCTGCT
OVRM1_0170_A07.b :                                     agttgtcatxxxxxxxxxxxxxxx


20110601C-000645 : GAGCCGCGTTCGGAGCCCTGCCGAGGAGGCTGCAGCCGTAGCCAGGAGCCCGCAGCCCGC
                   ---------+---------+---------+---------+---------+---------+ 106
ITT01_0028_D02.b : GAGCCGCGTTCGGAGCCCTGCCGAGGAGGCTGCAGCCGTAGCCAGGAGCCCGCAgcccgc
OVRT1_0068_H05.b : GAGCCGCGTTCGGAGCCCTGCCGAGGAGGCTGCAGCCGTAGCCAGGAGCCCGCAgcccgc
PST01_0039_H01.b : GAGCCGCGTTCGGAGCCCTGCCGAGGAGGCTGCAGCCGTAGCCAGGAGCCCGCAgcccgc
OVRM1_0170_A07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgcagtagccacctctgtcgctgcg


20110601C-000645 : GCCCGAGCCCGCAGCCGCCGCCGAGGGCGCCCCAGGCCGCGCCATGGTGAAGGTGACGTT
                   ---------+---------+---------+---------+---------+---------+ 166
ITT01_0028_D02.b : gcccgagcccgcagccgccgccgagggcgccccaggccgcgccATGGTGAAGGTGACGTT
OVRT1_0068_H05.b : gcccgagcccgcagccgccgccgagggcgccccaggccgcgccATGGTGAAGGTGACGTT
PST01_0039_H01.b : gcccgagcccgcagccgccgccgagggcgccccaggccgcgccATGGTGAAGGCGACGTT
OVRM1_0170_A07.b : gagctgcttgtctccggttgctgctgagcccgcagccgcCGCCATGGTGAAGGTGACGTT


20110601C-000645 : CAACTCGGCTCTGGCCCAGAAGGAGGCCAAGAAGGACGAGCCCAAGAGCGGAGAGGAGGC
                   ---------+---------+---------+---------+---------+---------+ 226
ITT01_0028_D02.b : CAACTCGGCTCTGGCCCAGAAGGAGGCCAAGAAGGACGAGCCCAAGAGCGGAGAGGAGGC
OVRT1_0068_H05.b : CAACTCGGCTCTGGCCCAGAAGGAGGCCAAGAAGGACGAGCCCAAGAGCGGAGAGGAGGC
PST01_0039_H01.b : CAACTCGGCTCTGGCCCAGAAGGAGGCCAAGAAGGACGAGCCCAAGAGCGGAGAGGAGGC
OVRM1_0170_A07.b : CAACTCGGCTCTGGCCCAGAAGGAGGCCAAGAAGGACGAGCCCAAGAGCGGAGAGGAGGC


20110601C-000645 : GCTCATCATCCCCCCCGACACCGTCGCGGTGGACTGCAAGGACCCAGATGAAGTGGTACC
                   ---------+---------+---------+---------+---------+---------+ 286
ITT01_0028_D02.b : GCTCATCATCCCCCCCGACACCGTCGCGGTGGACTGCAAGGACCCAGATGAAGTGGTACC
OVRT1_0068_H05.b : GCTCATCATCCCCCCCGACACCGTCGCGGTGGACTGCAAGGACCCAGATGAAGTGGTACC
PST01_0039_H01.b : GCTCATCATCCCCCCCGACACCGTCGCGGTGGACTGCAAGGACCCAGATGAAGTGGTACC
OVRM1_0170_A07.b : GCTCATCATCCCCCCCGACACCGTCGCGGTGGACTGCAAGGACCCAGATGAAGTGGTACC


20110601C-000645 : AGTTGGCCAAAGAAGAGCCTGGTGTTGGTGCATGTGCTTTGGCCTGGCATTTATGCTTGC
                   ---------+---------+---------+---------+---------+---------+ 346
ITT01_0028_D02.b : AGTTGGCCAAAGAAGAGCCTGGTGTTGGTGCATGTGCTTTGGCCTGGCATTTATGCTTGC
OVRT1_0068_H05.b : AGTTGGCCAAAGAAGAGCCTGGTATTGGTGCATGTGCTTTGGCCTGGCATTTATGCTTGC
PST01_0039_H01.b : AGTTGGCCAAAGAAGAGCCTGGTGTTGGTGCATGTGCTTTGGCCTGGCATTTATGCTTGC
OVRM1_0170_A07.b : AGTTGGCCAAAGAAGAGCCTGGTGTTGGTGCATGTGCTTTGGCCTGGCATTTATGCTTGC


20110601C-000645 : AGGTGTCATTCTAGGAGGAGCATACCTGTACAAATATTTTGCACTTCAACCAGATGACGT
                   ---------+---------+---------+---------+---------+---------+ 406
ITT01_0028_D02.b : AGGTGTCATTCTAGGAGGAGCATACCTGTACAAATATTTTGCACTTCAACCAGATGACGT
OVRT1_0068_H05.b : AGGTGTCATTCTAGGAGGAGCATACCTGTACAAATATTTTGCACTTCAACCAGATGACGT
PST01_0039_H01.b : AGGTGTCATTCTAGGAGGAGCATACCTGTACAAATATTTTGCACTTCAACCAGATGACGT
OVRM1_0170_A07.b : AGGTGTCATTCTAGGAGGAGCATACCTGTACAAATATTTTGCACTTCAACCAGATGACGT


20110601C-000645 : CTACTATTGTGGAATAAAGTACATCAAGGATGATGTCATCTTAAATGAGCCTCCTGCGAA
                   ---------+---------+---------+---------+---------+---------+ 466
ITT01_0028_D02.b : CTACTACTGTGGAATAAAGTACATCAAGGATGATGTCATCTTAAATGAGCCTCCTGCGAA
OVRT1_0068_H05.b : CTACTATTGTGGAATAAAGTACATCAAGGATGATGTCATCTTAAATGAGCCTCCTGCGAA
PST01_0039_H01.b : CTACTATTGTGGAATAAAGTACATCAAGGATGATGTCATCTTAAATGAGCCTCCTGCGAA
OVRM1_0170_A07.b : CTACTACTGTGGAATAAAGTACATCAAGGATGATGTCATCTTAAATGAGCCTCCTGCGAA


20110601C-000645 : CGCCCCTGCCGCCCGCTACCAGACCATCGAGGAAAATATTAAGATCTTCGAGGAAGATGG
                   ---------+---------+---------+---------+---------+---------+ 526
ITT01_0028_D02.b : CGCCCCTGCCGCCCGCTACCAGACCATCGAGGAAAATATTAAGATCTTCGAGGAAGATGG
OVRT1_0068_H05.b : CGCCCCTGCCGCCCGCTACCAGACCATCGAGGAAAATATTAAGATCTTCGAGGAAGATGG
PST01_0039_H01.b : CGCCCCTGCCGCCCGCTACCAGACCATCGAGGAAAATATTAAGATCTTCGAGGAAGATGG
OVRM1_0170_A07.b : CGCCCCTGCCGCCCGCTACCAGACCATCGAGGAAAATATTAAGATCTTCGAGGAAGATGG


20110601C-000645 : GGTCGAGTTCATCAGCGTGCCTGTCCCAGAGTTTGCGGACAGCGACCCTGCCAACATTGT
                   ---------+---------+---------+---------+---------+---------+ 586
ITT01_0028_D02.b : GGTCGAGTTCATCAGCGTGCCTGTCCCAGAGTTTGCGGACAGCGACCCTGCCAACATTGT
OVRT1_0068_H05.b : GGTCGAGTTCATCAGCGTGCCTGTCCCAGAGTTTGCGGACAGCGACCCTGCCAACATTGT
PST01_0039_H01.b : GGTCGAGTTCATCAGCGTGCCTGTCCCAGAGTTTGCGGACAGCGACCCTGCCAACATTGT
OVRM1_0170_A07.b : GGTCGAGTTCATCAGCGTGCCTGTCCCAGAGTTTGCGGACAGCGACCCTGCCAACATTGT


20110601C-000645 : GCATGACTTTAACAAGAAACTCACGGCTTATTTAGATCTTAACCTGGATAAGTGCTATGT
                   ---------+---------+---------+---------+---------+---------+ 646
ITT01_0028_D02.b : GCATGACTTTAACAAGAAACTCACGGCTTATTTAGATCTTAACCTGGATAAGTGCTATGT
OVRT1_0068_H05.b : GCATGACTTTAACAAGAAACCCACGGCTTATTTAGATCTTAACCTGGATAAGTGCTATGT
PST01_0039_H01.b : GCATGACTTTAACAAGAAACTCACGGCTTATTTAGATCTTAACCTGGATAAGTGCTATGT
OVRM1_0170_A07.b : GCATGACTTTAACAAGAAACTCACGGCTTATTTAGATCTTAACCTGGATAAGTGCTATGT


20110601C-000645 : GATTCCTCTGAACACTTCCATTGTTATGCCACCCAGAAACCTACTGGAGTTACTTATTAA
                   ---------+---------+---------+---------+---------+---------+ 706
ITT01_0028_D02.b : GATTCCTCTGAACACTTCCATTGTTATGCCACCCAGAAACCTACTGGAGTTACTTATTAA
OVRT1_0068_H05.b : GATTCCTCTGAACACTTCCATTGTTATGCCACCCAGAAACCTACTGGAGTTACTTATTAA
PST01_0039_H01.b : GATTCCTCTGAACACTTCCATTGTTATGCCACCCAGAAACCTACTGGAGTTACTTATTAA
OVRM1_0170_A07.b : GATTCCTCTGAACACTTCCATTGTTATGCCACCCAGAAACCTACTGGAGTTACTTATTAA


20110601C-000645 : CATAAAGGCTGGGACCTACCTGCCTCAGTCCTATTTGATCCATGAACACATGGTCATCAC
                   ---------+---------+---------+---------+---------+---------+ 766
ITT01_0028_D02.b : CATAAAGGCTGGGACCTACCTGCCTCAGTCCTATTTGATCCATGAACACATGGTCATCAC
OVRT1_0068_H05.b : CATAAAGGCTGGGACCTACCTGCCTCAGTCCTATTTGATCCATGAACACATGGTCATCAC
PST01_0039_H01.b : CATAAAGGCTGGGACCTACCTGCCTCAGTCCTATTTGATCCATGAACACATGGTCATCAC
OVRM1_0170_A07.b : CATAAAGGCTGGGACCTACCTGCCTCAGTCCTATTTGATCCATGAACACATGGTCATCAC


20110601C-000645 : TGATCGCATTGAAAACATCGATCACCTGGGCTTCTATATTTATCGACTGTGCCCATGACA
                   ---------+---------+---------+---------+---------+---------+ 826
ITT01_0028_D02.b : TGATCGCATTGAAAACATCGATCACCTGGGCTTCTATATTTATCGACTGTGCCCATGACA
OVRT1_0068_H05.b : TGATCGCATTGAAAACATCGATCACCTGGGCTTCTATATTTATCGACTGTGCCCATGACA
PST01_0039_H01.b : TGATCGCATTGAAAACATCGATCACCTGNGCTTCTATATTTATCGACTGTGCCATNGACA
OVRM1_0170_A07.b : TGATCGCATTGAAAACATCGATCACCTGGGCTTCTATATTTATCGACTGTGCCNATGACA


20110601C-000645 : GGAAACTTACAAACTGCAGCGCAAAGAAACCGTTAAAGGTATTCAGAAACGTGAAGCCAG
                   ---------+---------+---------+---------+---------+---------+ 886
ITT01_0028_D02.b : GGAAACTTACAAACTGCAGCGCNAAGAAACCGTT*AAGGTATTCAGAAACGTGAAGCCAG
OVRT1_0068_H05.b : GGNAACTTACAAACTGCAGCGCAAAGAAAACGTTTAAGGTATTCAGAAACGTGAAGCCAG
PST01_0039_H01.b : GGAAACTTACAAACTGCAGCGCAAAGAAACCGTTAAAGGTATTCAGAAACGTGAAGCCAG
OVRM1_0170_A07.b : GGAAACTTACAGACTGCAGC                                       


20110601C-000645 : CAATTGTGCTACGATTCGGCATTTTGAAAACAAATTTGCCGTCGAAACTTTAATTTGTTC
                   ---------+---------+---------+---------+---------+---------+ 946
ITT01_0028_D02.b : CAATTGTGCTACAATTCGGCATTTTGAAAACAAATTTGCCGTCGAAACTTTAATTTGTTC
OVRT1_0068_H05.b : GCATTGTGCTACGATTCNGCATTTTGAAAACAAATTTGCCGTCGAAACTTTAATTTGTTC
PST01_0039_H01.b : NCATTGTGCTACGATTCGGCATTTTGAAAACAAATTTGCCCGTCGAACTTTAATTTGTTC
OVRM1_0170_A07.b :                                                             


20110601C-000645 : TTTAACAGTTCAGAAAA*CATTATGGAGGAAAACTTAATACCCAGCATAATAACCCCACC
                   ---------+---------+---------+---------+---------+---------+ 1005
ITT01_0028_D02.b : TTTGACAGTCCAGAAAAACCTTATGGAGAAAAACTTAATACACAGCATAATACCCCCACC
OVRT1_0068_H05.b : TTGAACAGTC*AGAAAAACATTTTGGAAGAAAACTTAATCCCCGGCATAATAACCCAACC
PST01_0039_H01.b : TTTTGACAGTCAGAAAA*CATTATGGAGGAAAACTTANTACCCAGCATAATAACCCCACC
OVRM1_0170_A07.b :                                                             


20110601C-000645 : CTTTGGAATTTGTGCAGTGATTATTTTTTAAAATCTTCTTTCATGTAAGTAGCAAACAGG
                   ---------+---------+---------+---------+---------+---------+ 1065
ITT01_0028_D02.b : CCTTGTTATTTGTGCAGTGGATATTTTTTAAAATCTTCTTTCAggtagttagcaacaggc
OVRT1_0068_H05.b : CTTTGGATTTTGGGCAGTGATTATTTTTaaaacttccttccggaagttgcaaacaggctt
PST01_0039_H01.b : CTTTGTTATTTGTGCAGTGATTAT*TTTTAAAATCTTCTTTCATGTAAGTAGCAAACAGG
OVRM1_0170_A07.b :                                                             


20110601C-000645 : GCTTCACTATCTTTTCATCCCATGATTCCAATAAAACCATTACCTTTTAAAA........
                   ---------+---------+---------+---------+---------+---------+ 1117
ITT01_0028_D02.b : cttcactacctttcatcccattgatccattaaaaccattacttttaaaaaaa       
OVRT1_0068_H05.b : cccaacttttctccctggatccattaaaccttacctttaaaaccttttcccttccaaggg
PST01_0039_H01.b : GCTTCACTATCTTTTCATCCCATGATTCCAATAAAACCATTACCTTTTAAAAtctttttt
OVRM1_0170_A07.b :                                                             


20110601C-000645 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1117
ITT01_0028_D02.b :                                                             
OVRT1_0068_H05.b : gggtcttttcttggataaatttgtggaagcaagggggagaaccctccccaaactttgggg
PST01_0039_H01.b : cctttccaggggggggtcttttatcctgaattaaaattggatgaaacccagggtaaaatc
OVRM1_0170_A07.b :                                                             


20110601C-000645 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1117
ITT01_0028_D02.b :                                                             
OVRT1_0068_H05.b : tgaaaaatcaattcctattctttcccattttttgttttattcttttcaggggggtttcta
PST01_0039_H01.b : accttcccaataaacctttggggttaaaaaaattccaattccttattcttttcccgattt
OVRM1_0170_A07.b :                                                             


20110601C-000645 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1117
ITT01_0028_D02.b :                                                             
OVRT1_0068_H05.b : tcctatttcccctaagagcccccgcctttgttgttgccctctgtggagattacacttttt
PST01_0039_H01.b : tt                                                         
OVRM1_0170_A07.b :                                                             


20110601C-000645 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1117
ITT01_0028_D02.b :                                                             
OVRT1_0068_H05.b : cctctaaggggtttgggcatataaaaatcctccgggtttccgccgga            
PST01_0039_H01.b :                                                             
OVRM1_0170_A07.b :