[Help]

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-000710

Length: 993

Sequence:  [FASTA format sequence]
TCGGGATGTT CAGAAGCGAC TGGCATTGTT GGCAGTTTCG CTGTTGCGGT CGAGGTGATT
CGGTGTGATT GGCTTCACAG CGTCTGTGCC TTCACTCACA GGTCAAAATG CAGATCTTCG
TGAAGACCCT GACCGGCAAG ACCATCACCC TGGAGGTGGA GCCCAGTGAC ACCATCGAGA
ATGTGAAGGC CAAGATCCAG GATAAGGAGG GCATTCCCCC CGACCAGCAG AGGCTCATCT
TTGCAGGCAA GCAGCTGGAG GATGGCCGCA CTCTTTCTGA TTACAACATC CAGAAAGAGT
CCACCCTCCA TCTGGTTCTG CGTCTGAGGG GTGGTATGCA GATCTTCGTG AAGACCTTGA
CCGGCAAGAC CATCACTCTG GAGGTGGAGC CCAGTGACAC CATCGAGAAT GTGAAGGCCA
AGATCCAGGA TAAGGAGGGC ATTCCCCCCG ACCAGCAGAG GCTCATCTTT GCAGGCAAGC
AGCTGGAAGA TGGCCGCACT CTTTCTGATT ACAACATCCA GAAAGAGTCC ACTCTCCATC
TGGTTCTGCG TCTGAGGGGT GGTATGCAGA TCTTCGTGAA GACCTTGACC GGCAAGACCA
TCACCCTGGA GGTGGAGCCC AGTGACACCA TCGAGAATGT GAAGGCCAAG ATCCAGGATA
AGGAGGGCAT TCCCCCCGAC CAGCAGAGGC TCATCTTTGC AGGCAAGCAG CTGGAAGATG
GCCGCACTCT TTCTGATTAC AACATCCAGA AAGAGTCCAC TCTCCATCTG GTCCTCCGTC
TGAGGGGTGG CTGCTAATTC TCCAGTCTTG CATTCATAAT GCCCACTGAT GGCATTACTC
TGCACTCTAG CCATTTGCCC CCATTTTAGT TTAGAAATTA CCAGTTTCAG TAATAGCTGA
ACCTGTCCAA AATGTTAATA AAGGTTTTTG TGTGTCGAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		UBB	polyubiquitin-B precursor [Homo sapiens].	448	e-126	O
		UBC	polyubiquitin-C [Homo sapiens].	445	e-125
		UBA52	ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].	151	8e-37	O
		RPS27A	ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].	151	1e-36	O
		RPS27A	ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].	151	1e-36	O
		RPS27A	ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].	151	1e-36	O
		UBA52	ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].	151	8e-37	O
		NEDD8	NEDD8 precursor [Homo sapiens].	96.3	4e-20	O
		UBD	ubiquitin D [Homo sapiens].	84.7	1e-16	O
		ISG15	ubiquitin-like protein ISG15 precursor [Homo sapiens].	77	2e-14	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Ubb	polyubiquitin-B [Mus musculus].	445	e-125
		Ubc	polyubiquitin-C [Mus musculus].	445	e-125
		Uba52	ubiquitin-60S ribosomal protein L40 [Mus musculus].	151	9e-37	O
		Rps27a	ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].	151	9e-37	O
		Rps27a	ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].	151	9e-37	O
		Gm7866	PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].	151	7e-37
		Gm7866	PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].	151	7e-37
		Gm8430	PREDICTED: hypothetical protein LOC667035 [Mus musculus].	149	3e-36	O
		Gm8430	PREDICTED: hypothetical protein LOC667035 [Mus musculus].	148	6e-36	O
		Gm4802	PREDICTED: hypothetical protein LOC216818 [Mus musculus].	108	6e-24

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC479513	PREDICTED: similar to ubiquitin B precursor isoform 1 [Canis familiaris].	446	e-125	O
		LOC610457	PREDICTED: similar to CG11624-PA, isoform A [Canis familiaris].	445	e-125
		LOC479513	PREDICTED: similar to ubiquitin B precursor isoform 3 [Canis familiaris].	301	6e-82	O
		LOC479513	PREDICTED: similar to ubiquitin B precursor isoform 2 [Canis familiaris].	284	1e-76	O
		LOC608887	PREDICTED: similar to polyubiquitin [Canis familiaris].	164	2e-40	O
		LOC474599	PREDICTED: similar to ubiquitin and ribosomal protein S27a precursor [Canis familiaris].	155	7e-38
		LOC610074	PREDICTED: similar to ubiquitin B precursor [Canis familiaris].	152	4e-37	O
		UB-RPL40	hypothetical protein LOC612529 [Canis lupus familiaris].	151	1e-36	O
		UBA52	ubiquitin-60S ribosomal protein L40 precursor [Canis lupus familiaris].	151	8e-37	O
		LOC481020	PREDICTED: similar to ubiquitin and ribosomal protein S27a precursor [Canis familiaris].	146	3e-35	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		LOC281370	polyubiquitin-B [Bos taurus].	446	e-125
		UBC	polyubiquitin-C [Bos taurus].	445	e-125
		LOC100296593	PREDICTED: Os05g0242100-like [Bos taurus].	314	9e-86	O
		LOC100296593	PREDICTED: Os05g0242100-like [Bos taurus].	314	9e-86	O
		LOC100335189	PREDICTED: Os05g0242100-like [Bos taurus].	265	4e-71
		LOC100138493	PREDICTED: Os05g0242100-like [Bos taurus].	258	7e-69	O
		LOC783718	PREDICTED: ubiquitin B-like, partial [Bos taurus].	160	2e-39	O
		LOC783718	PREDICTED: ubiquitin B-like [Bos taurus].	152	4e-37	O
		UBA52	ubiquitin-60S ribosomal protein L40 [Bos taurus].	151	1e-36	O
		RPS27A	ubiquitin-40S ribosomal protein S27a [Bos taurus].	151	1e-36	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		UBB	ubiquitin [Sus scrofa].	448	e-126	O
		LOC100521156	PREDICTED: polyubiquitin-B-like isoform 2 [Sus scrofa].	445	e-125
		LOC100521156	PREDICTED: polyubiquitin-B-like isoform 5 [Sus scrofa].	445	e-125
		LOC100521156	PREDICTED: polyubiquitin-B-like isoform 4 [Sus scrofa].	445	e-125
		LOC100521156	PREDICTED: polyubiquitin-B-like isoform 3 [Sus scrofa].	445	e-125
		LOC100521156	PREDICTED: polyubiquitin-B-like isoform 1 [Sus scrofa].	445	e-125
		LOC100627098	PREDICTED: hypothetical protein LOC100627098 [Sus scrofa].	406	e-113	O
		LOC100514637	PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].	151	6e-37	O
		UBA52	ubiquitin-60S ribosomal protein L40 [Sus scrofa].	151	5e-37	O
		LOC100514637	PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].	151	6e-37	O