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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-001264

Length: 1,823

Sequence:  [FASTA format sequence]
GGAACTTCTC CCCCGACCCG GAGGCTGAGG ATCATGGGGC CTGGAGCCCT CTTCCTGCTG
CTGTCGGGGA CCCTGGCCCT GACCGGGACC CAGGCGGGTC CCCACTCCCT GAGCTATTTC
TCCACCGCCG TGTCCCGGCC CGACCGCGGG GAGCCCTGTT TCATCGAAGT CGGCTACGTG
GACGACACGC AGTTCGTGCG GTTCGACAGC GACGCCCCCA ATCCGCGGAT GGAGCCGCGG
GCGCCGTGGA TAGAGAAGGA GGGGCAGGAG TATTGGGATC GGGAGACGCG GCGTGTCATG
GGCAACGCAC AGACTTTCCG AGGGAGCCTG AACAACCTGC GCGGCTACTA CAACCAGAGC
GAGGCCGGGT CTCACACCCT CCAGTGGATG TACGGCTGCT ACTTGGGACC AGACGGGCTC
CTCCTCCGCG GGTACAGTCA GTTTGGCTAC GACGGCGCCG ATTACCTCGC CCTGAACGAG
GACCTGCGCT CCTGGACCGC GGCGGACACG GCGGCTCAGA TCTCCAAGCG CAAGTGGGAG
GCGGCCGATG CGGCGGAGCG TAGGAGGAGC TACCTGCAGG GCACGTGTGT GGAGTGGCTC
CAGAAATACC TGGAGATGGG GAAGGACACG CTGCAGCGCG CAGAGCCTCC AAAGACACAT
GTGACCCGCC ACCCCAGCTC TGACCTCGGG GTCACCTTGA GGTGCTGGGC CCTGGGCTTC
TACCCTAAGG AGATCTCCCT GACCTGGCAG CGCGAGGGCC AGGACCAGAG CCAAGACATG
GAGCTGGTGG AGACCAGGCC CTCAGGGGAT GGGACCTTCC AGAAGTGGGC GGCCCTGGTG
GTGCCTCCTG GAGAGGAGCA GAGCTACACC TGCCATGTGC AGCACGAGGG CCTGCAGGAG
CCCCTCACCC TGAGATGGGA CCCTCCTCAG CCCCCCGTCC CCATCGTGGG CATCATTGTT
GGCCTGGTTC TCGTCCTGGT CGCTGGAGCC ATGGTGGCTG GAGTTGTGAT CTGGAGGAAG
AAGCGCTCAG GTGAAAAAGG AGGGAGCTAC ACTCAGGCTG CAGGCAGTGA CAGTGCCCAG
GGCTCCGATG TGTCCCTTAC CAAGGATCCT AGAGTGTGAG ATAGCTGCCT TGTGTGGACT
GAGTGACACA GATTTGTTCA CGTCCCACTT TGTGACTTCG GAAACCCTGC CTCCTGTTTC
TGCAGCAGCA TTTGAATGTG TCTGTGTCCC TATGAGCATC ATGAGAGGAG GTGGGGACCC
TGGCCCAGCC CTGCCCCCCA TGTCCCCTCC TCACCCTGAC CTGTGTTCTC TTCCCTGATC
CTCTTTCCAG TTCCAGCAGG TGGGGGGGCT GGGCCATCTC CATCCCTGTC CTAACTCTGT
GTTGCACTGG TAATGTCTTA ATTTTCCTGT TGGAAATAAA ATCCAATATG AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAANNNCC CGGGCCCCGA TTTCCCTTTT TGGGGGGGTT
TTTTGGTCCC CAAAAAAAAA AAAAATTTTT TGGGGTTTGG AAACCCCCCC CCTAAAGGGG
GGGAAAAAAA AGGTTTTTTT TTAAAAATTT GGGGAGGTTT TTTTTTTTTT GAACCCCTTT
AAACCCCCCA AAAAAATTTT TAAACCCCCT TTTTTTTTTT TTTTTTTTTT CCCCTCCGGG
GGGGAGGGGG GAAATTTTTT TTCCCAAAAA AAAACCCCCC CCCCCCCGGA GGAAAGGGTT
TTTTCTTTAT GGCCCCCCCC CCC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		HLA-B	major histocompatibility complex, class I, B precursor [Homo sapiens].	477	e-134	O
		HLA-A	HLA class I histocompatibility antigen, A-1 alpha chain precursor [Homo sapiens].	473	e-133	O
		HLA-C	HLA class I histocompatibility antigen, Cw-1 alpha chain precursor [Homo sapiens].	473	e-133	O
		HLA-C	HLA class I histocompatibility antigen, Cw-1 alpha chain precursor [Homo sapiens].	470	e-132	O
		HLA-A	HLA class I histocompatibility antigen, A-1 alpha chain precursor [Homo sapiens].	468	e-131	O
		HLA-E	HLA class I histocompatibility antigen, alpha chain E precursor [Homo sapiens].	460	e-129	O
		HLA-G	HLA class I histocompatibility antigen, alpha chain G precursor [Homo sapiens].	446	e-125	O
		HLA-F	HLA class I histocompatibility antigen, alpha chain F isoform 1 precursor [Homo sapiens].	417	e-116	O
		HLA-F	HLA class I histocompatibility antigen, alpha chain F isoform 2 precursor [Homo sapiens].	416	e-116	O
		HLA-F	HLA class I histocompatibility antigen, alpha chain F isoform 3 precursor [Homo sapiens].	249	6e-66	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		H2-Q10	H-2 class I histocompatibility antigen, Q10 alpha chain precursor [Mus musculus].	431	e-121	O
		Gm8909	hypothetical protein LOC667977 [Mus musculus].	425	e-119	O
		H2-T23	H-2 class I histocompatibility antigen, D-37 alpha chain precursor [Mus musculus].	422	e-118	O
		LOC547349	MHC class I family member [Mus musculus].	421	e-117	O
		LOC100045864	PREDICTED: h-2 class I histocompatibility antigen, D-P alpha chain-like isoform 4 [Mus musculus].	419	e-117
		LOC100045864	PREDICTED: h-2 class I histocompatibility antigen, D-P alpha chain-like isoform 1 [Mus musculus].	419	e-117	O
		H2-Q9	H-2 class I histocompatibility antigen, Q9 alpha chain [Mus musculus].	419	e-117	O
		LOC100045864	PREDICTED: h-2 class I histocompatibility antigen, D-P alpha chain-like isoform 6 [Mus musculus].	419	e-117	O
		LOC100045864	PREDICTED: h-2 class I histocompatibility antigen, D-P alpha chain-like isoform 5 [Mus musculus].	419	e-117
		H2-Q7	H-2 class I histocompatibility antigen, Q7 alpha chain isoform 1 precursor [Mus musculus].	418	e-117	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		dla88	MHC class I DLA-88 [Canis lupus familiaris].	473	e-133	O
		DLA-12	MHC class I DLA-12 [Canis lupus familiaris].	464	e-130	O
		DLA-64	MHC class I DLA-64 [Canis lupus familiaris].	442	e-124	O
		DLA-79	MHC class Ib [Canis lupus familiaris].	376	e-104	O
		DLA-79	PREDICTED: MHC class Ib [Canis familiaris].	376	e-104	O
		AZGP1	PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis familiaris].	196	6e-50	O
		LOC476414	PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor (FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor transporter, alpha chain) [Canis familiaris].	142	1e-33	O
		HLA-DQB1	major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris].	70.5	5e-12	O
		LOC608848	PREDICTED: similar to T-cell surface glycoprotein CD1a precursor (CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1 thymocyte antigen) isoform 2 [Canis familiaris].	69.7	9e-12	O
		LOC608848	PREDICTED: similar to T-cell surface glycoprotein CD1a precursor (CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1 thymocyte antigen) isoform 1 [Canis familiaris].	69.7	9e-12	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		JSP.1	MHC Class I JSP.1 [Bos taurus].	507	e-143	O
		LOC790811	hypothetical protein LOC790811 [Bos taurus].	505	e-143	O
		BOLA	MHC class I heavy chain isoform 1 [Bos taurus].	501	e-142	O
		BOLA	MHC class I heavy chain isoform 2 [Bos taurus].	498	e-141	O
		LOC100125916	hypothetical protein LOC100125916 [Bos taurus].	498	e-141	O
		BOLA-N	BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor [Bos taurus].	496	e-140	O
		BOLA	PREDICTED: MHC class I antigen clone 2 [Bos taurus].	489	e-138
		LOC507917	PREDICTED: MHC class I heavy chain [Bos taurus].	487	e-137
		LOC507917	PREDICTED: MHC class I heavy chain [Bos taurus].	487	e-137
		BoLA	major histocompatibility complex, class I, A [Bos taurus].	480	e-135	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		SLA-3	MHC class I antigen 3 [Sus scrofa].	587	e-168	O
		SLA-2	MHC class I antigen 2 [Sus scrofa].	580	e-166	O
		LOC100513601	PREDICTED: patr class I histocompatibility antigen, A-126 alpha chain-like [Sus scrofa].	565	e-161	O
		SLA-1	MHC class I antigen 1 [Sus scrofa].	562	e-160	O
		LOC100622689	PREDICTED: patr class I histocompatibility antigen, A-126 alpha chain-like [Sus scrofa].	561	e-160	O
		SLA-5	MHC class I antigen 5 [Sus scrofa].	531	e-151	O
		SLA-7	MHC class I antigen 7 [Sus scrofa].	457	e-129	O
		SLA-8	MHC class I antigen 8 [Sus scrofa].	449	e-126	O
		SLA-6	MHC class I antigen 6 [Sus scrofa].	410	e-115
		LOC100626428	PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102 alpha chain-like [Sus scrofa].	253	2e-67

Alignment:      TOP