Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-001576

Sequence: [FASTA format sequence] AGCTCTGGCA AGGAGCCCAG CCCCAGGATC CCGTTCTGTG ATCCGGAAAG AACACAGACC ACCCGCCATG GAGTTTCGGC TGAACTGGGT GGTCTTGTTT GCTCTCTTAC AAGGTGTCCA GGGTGAGGAG AAGCTGGTGG ACTCTGGAGG AGGCCTGGTG CAGCCTGGGG GGTCTCTGAG ACTCTCCTGT GTCGGCTCTG GATTCCTCTT TAGTAGCTAC AACATGATCT GGGTCCGCCA GGCTCCAGGG AAGGGGCTGG AGTGGCTGGC AGGTATTGAC GAGAGGGGTA GTGAGACCTA CTACGCAGAC TCTGTGAAGG GCCGATTCAC CATCTCTAGA GACAACTCCC AGAACACGGC CTATCTGCGA ATGAACAGCC TGAGAACCGA AGACACGGCC CGCTATTATT GTGCAAGATG TTACGTTGGC GGCTATAGCG GACACTTCGA TGCAATGGAT CTCTGGGGCC CAGGCGTTGA AGTCGTCGTG TCCTCAGTGT CTGAAACCAG CCCCAAAATC TTCCCACTGA CTCTGGGGAG CAGCGAGCCT GCCGGATATG TGGTCATCGC CTGCCTGGTC CGGGACTTCT TCCCGTCAGA GCCCCTGACA GTAACCTGGA GCCCTAGTCG CGAGGGCGTT ATTGTCAGAA ACTTCCCCCC TGCGCAGGCC GGGGGCCTGT ACACCATGAG CAGCCAGCTG ACCTTGCCAG TCGAGCAGTG CCCAGCCGAT CAGATCCTGA AGTGCCAAGT GCAGCACCTC TCCAAATCCA GCCAGTCCGT GAACGTGCCC TGCAAAGATC CATGTCCCCA GTGCTGCAAG CCCAGCCTGT CCCTGCAGCC ACCAGCCCTT GCAGACCTGC TCCTGGGCTC CAATGCCAGC CTCACGTGCA CACTCAGTGG CCTGAAAAAA TCCGAGGGTG TCAGCTTCAC CTGGCAGCCT CAGGTGGGAA GGATGGCGTC CAGGCGTCCC CCACGCGTGA TTCCTGTGGC TGCTACAACG TGTTCAGCAT CCTGCCAGCC TTGGCTGATC CTTGGAACAA GGAAAGAACA TTCTCCTGCC CCGC

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
LOC100653245 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 176 2e-44 O

LOC100289290 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 175 6e-44 O

LOC100653084 PREDICTED: hypothetical protein LOC100653084 [Homo sapiens]. 174 2e-43 O

LOC100134256 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 174 1e-43 O

LOC100132941 PREDICTED: hypothetical protein LOC100132941 [Homo sapiens]. 173 2e-43 O

LOC100132941 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 173 2e-43 O

LOC100293211 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 171 1e-42 O

LOC100291917 PREDICTED: hypothetical protein LOC100291917 [Homo sapiens]. 166 4e-41 O

LOC100508797 PREDICTED: hypothetical protein LOC100508797 [Homo sapiens]. 165 7e-41

LOC401847 PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens]. 157 1e-38 O

Locus	Definition	Score	E value	FL
LOC100653245	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	176	2e-44	O
LOC100289290	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	175	6e-44	O
LOC100653084	PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].	174	2e-43	O
LOC100134256	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	174	1e-43	O
LOC100132941	PREDICTED: hypothetical protein LOC100132941 [Homo sapiens].	173	2e-43	O
LOC100132941	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	173	2e-43	O
LOC100293211	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	171	1e-42	O
LOC100291917	PREDICTED: hypothetical protein LOC100291917 [Homo sapiens].	166	4e-41	O
LOC100508797	PREDICTED: hypothetical protein LOC100508797 [Homo sapiens].	165	7e-41
LOC401847	PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].	157	1e-38	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Igh-VJ558 PREDICTED: hypothetical protein LOC16061 [Mus musculus]. 144 3e-43 O

Igh-VJ558 PREDICTED: ig alpha chain C region isoform 1 [Mus musculus]. 142 3e-34 O

Igh-VJ558 PREDICTED: ig alpha chain C region [Mus musculus]. 142 3e-34 O

LOC100047361 PREDICTED: hypothetical protein LOC100047361 [Mus musculus]. 112 6e-25

LOC641221 PREDICTED: putative V-set and immunoglobulin domain-containing protein 6-like [Mus musculus]. 108 9e-24 O

LOC100505002 PREDICTED: hypothetical protein LOC100505002 [Mus musculus]. 104 1e-22 O

LOC100505009 PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus]. 103 2e-22 O

LOC100045292 PREDICTED: hypothetical protein LOC100045292 [Mus musculus]. 97.1 2e-20 O

Locus	Definition	Score	E value	FL
Igh-VJ558	PREDICTED: hypothetical protein LOC16061 [Mus musculus].	144	3e-43	O
Igh-VJ558	PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].	142	3e-34	O
Igh-VJ558	PREDICTED: ig alpha chain C region [Mus musculus].	142	3e-34	O
LOC100047361	PREDICTED: hypothetical protein LOC100047361 [Mus musculus].	112	6e-25
LOC641221	PREDICTED: putative V-set and immunoglobulin domain-containing protein 6-like [Mus musculus].	108	9e-24	O
LOC100505002	PREDICTED: hypothetical protein LOC100505002 [Mus musculus].	104	1e-22	O
LOC100505009	PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus].	103	2e-22	O
LOC100045292	PREDICTED: hypothetical protein LOC100045292 [Mus musculus].	97.1	2e-20	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC607229 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 184 1e-46

LOC607179 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 184 1e-46

LOC606929 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 183 2e-46 O

LOC607010 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 182 4e-46

LOC607479 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 181 1e-45 O

LOC606869 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 181 1e-45

LOC606916 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 180 2e-45

LOC606810 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 179 5e-45

LOC490895 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 179 5e-45

LOC607467 PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris]. 176 3e-44 O

Locus	Definition	Score	E value	FL
LOC607229	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	184	1e-46
LOC607179	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	184	1e-46
LOC606929	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	183	2e-46	O
LOC607010	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	182	4e-46
LOC607479	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	181	1e-45	O
LOC606869	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	181	1e-45
LOC606916	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	180	2e-45
LOC606810	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	179	5e-45
LOC490895	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	179	5e-45
LOC607467	PREDICTED: similar to Ig heavy chain V-III region VH26 precursor [Canis familiaris].	176	3e-44	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
LOC524810 hypothetical protein LOC524810 [Bos taurus]. 278 4e-75 O

LOC444876 PREDICTED: IgM [Bos taurus]. 105 5e-23 O

LOC100300716 PREDICTED: Ig heavy chain-like, partial [Bos taurus]. 103 3e-22 O

LOC444875 PREDICTED: IgM [Bos taurus]. 103 3e-22 O

LOC100299578 PREDICTED: hypothetical protein [Bos taurus]. 85.1 1e-16 O

IGLL1 immunoglobulin lambda-like polypeptide 1 [Bos taurus]. 70.1 3e-12 O

LOC100336430 PREDICTED: hCG96018-like [Bos taurus]. 57 3e-08 O

LOC616727 PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos taurus]. 56.2 5e-08 O

Locus	Definition	Score	E value	FL
LOC524810	hypothetical protein LOC524810 [Bos taurus].	278	4e-75	O
LOC444876	PREDICTED: IgM [Bos taurus].	105	5e-23	O
LOC100300716	PREDICTED: Ig heavy chain-like, partial [Bos taurus].	103	3e-22	O
LOC444875	PREDICTED: IgM [Bos taurus].	103	3e-22	O
LOC100299578	PREDICTED: hypothetical protein [Bos taurus].	85.1	1e-16	O
IGLL1	immunoglobulin lambda-like polypeptide 1 [Bos taurus].	70.1	3e-12	O
LOC100336430	PREDICTED: hCG96018-like [Bos taurus].	57	3e-08	O
LOC616727	PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos taurus].	56.2	5e-08	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
LOC396781 IgG heavy chain [Sus scrofa]. 255 3e-68 O

LOC100621525 PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus scrofa]. 70.1 2e-12 O

		Locus	Definition	Score	E value	FL
		LOC396781	IgG heavy chain [Sus scrofa].	255	3e-68	O
		LOC100621525	PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus scrofa].	70.1	2e-12	O

Assembly Members: 5 TOP

Library Plate Loc. Read Name Accession Full Seq.

TCH01 0048 C06 TCH01_0048_C06.b CJ026010 AK238127
TCH01 0055 H04 TCH01_0055_H04.b BW976020
TCH01 0055 H06 TCH01_0055_H06.b BW976022
TCH01 0083 B08 TCH01_0083_B08.b CJ028437
TCH01 0103 C06 TCH01_0103_C06.b CJ029970

SNP: 1 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
49 A 3 0 0.600 W S AAA/K
G 2 0 0.400 AAG/K

Alignment: TOP

20110601C-001576 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
TCH01_0048_C06.b :         nnggcttgtgacttaacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0055_H06.b :  nnnnnggcttggactataacagtttgtacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0055_H04.b : nnnnnggcttggactatnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0103_C06.b :  nnnaagcatggactatnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0083_B08.b :  ttttggctaggactataacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-001576 : .....................AGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTTCTGT
                   ---------+---------+---------+---------+---------+---------+ 39
TCH01_0048_C06.b : xxxxxxxxxxxxxxxxxxxxxAGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTTCTGT
TCH01_0055_H06.b : xxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTTCTGT
TCH01_0055_H04.b : xxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTTCTGT
TCH01_0103_C06.b : xxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTTCTGT
TCH01_0083_B08.b : xxxxxxxxxxxxxxxxxxxxxxGCTCTGGCAAGGAGCCCAGCCCCAGGATCCCGTTCTGT


20110601C-001576 : GATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTTGTT
                   ---------+---------+---------+---------+---------+---------+ 99
TCH01_0048_C06.b : GATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTTGTT
TCH01_0055_H06.b : GATCCGGAAGGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTTGTT
TCH01_0055_H04.b : GATCCGGAAGGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTTGTT
TCH01_0103_C06.b : GATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTTGTT
TCH01_0083_B08.b : GATCCGGAAAGAACACAGACCACCCGCCATGGAGTTTCGGCTGAACTGGGTGGTCTTGTT


20110601C-001576 : TGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGACTCTGGAGGAGGCCTGGT
                   ---------+---------+---------+---------+---------+---------+ 159
TCH01_0048_C06.b : TGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGACTCTGGAGGAGGCCTGGT
TCH01_0055_H06.b : TGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGACTCTGGAGGAGGCCTGGT
TCH01_0055_H04.b : TGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGACTCTGGAGGAGGCCTGGT
TCH01_0103_C06.b : TGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGACTCTGGAGGAGGCCTGGT
TCH01_0083_B08.b : TGCTCTCTTACAAGGTGTCCAGGGTGAGGAGAAGCTGGTGGACTCTGGAGGAGGCCTGGT


20110601C-001576 : GCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCCTCTTTAGTAGCTA
                   ---------+---------+---------+---------+---------+---------+ 219
TCH01_0048_C06.b : GCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCCTCTTTAGTAGCTA
TCH01_0055_H06.b : GCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCCTCTTTAGTAGCTA
TCH01_0055_H04.b : GCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCCTCTTTAGTAGCTA
TCH01_0103_C06.b : GCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCCTCTTTAGTAGCTA
TCH01_0083_B08.b : GCAGCCTGGGGGGTCTCTGAGACTCTCCTGTGTCGGCTCTGGATTCCTCTTTAGTAGCTA


20110601C-001576 : CAACATGATCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCAGGTATTGA
                   ---------+---------+---------+---------+---------+---------+ 279
TCH01_0048_C06.b : CAACATGATCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCAGGTATTGA
TCH01_0055_H06.b : CAACATGATCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCAGGTATTGA
TCH01_0055_H04.b : CAACATGATCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCAGGTATTGA
TCH01_0103_C06.b : CAACATGATCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCAGGTATTGA
TCH01_0083_B08.b : CAACATGATCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTGGCAGGTATTGA


20110601C-001576 : CGAGAGGGGTAGTGAGACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCTAG
                   ---------+---------+---------+---------+---------+---------+ 339
TCH01_0048_C06.b : CGAGAGGGGTAGTGAGACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCTAG
TCH01_0055_H06.b : CGAGAGGGGTAGTGAGACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCTAG
TCH01_0055_H04.b : CGAGAGGGGTAGTGAGACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCTAG
TCH01_0103_C06.b : CGAGAGGGGTAGTGAGACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCTAG
TCH01_0083_B08.b : CGAGAGGGGTAGTGAGACCTACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCTAG


20110601C-001576 : AGACAACTCCCAGAACACGGCCTATCTGCGAATGAACAGCCTGAGAACCGAAGACACGGC
                   ---------+---------+---------+---------+---------+---------+ 399
TCH01_0048_C06.b : AGACAACTCCCAGAACACGGCCTATCTGCGAATGAACAGCCTGAGAACCGAAGACACGGC
TCH01_0055_H06.b : AGACAACTCCCAGAACACGGCCTATCTGCGAATGAACAGCCTGAGAACCGAAGATACGGC
TCH01_0055_H04.b : AGACAACTCCCAGAACACGGCCTATCTGCGAATGAACAGCCTGAGAACCGAAGATACGGC
TCH01_0103_C06.b : AGACAACTCCCAGAACACGGCCTATCTGCGAATGAACAGCCTGAGAACCGAAGACACGGC
TCH01_0083_B08.b : AGACAACTCCCAGAACACGGCCTATCTGCGAATGAACAGCCTGAGAACCGAAGACACGGC


20110601C-001576 : CCGCTATTATTGTGCAAGATGTTACGTTGGCGGCTATAGCGGACACTTCGATGCAATGGA
                   ---------+---------+---------+---------+---------+---------+ 459
TCH01_0048_C06.b : CCGCTATTATTGTGCAAGATGTTACGTTGGCGGCTATAGCGGACACTTCGATGCAATGGA
TCH01_0055_H06.b : CCGCTATTATTGTGCAAGATGTTACGTTGGCGGCTATAGCGGACACTTCGATGCAATGGA
TCH01_0055_H04.b : CCGCTATTATTGTGCAAGATGTTACGTTGGCGGCTATAGCGGACACTTCGATGCAATGGA
TCH01_0103_C06.b : CCGCTATTATTGTGCAAGATGTTACGTTGGCGGCTATAGCGGACACTTCGATGCAATGGA
TCH01_0083_B08.b : CCGCTATTATTGTGCAAGATGTTACGTTGGCGGCTATAGCGGACACTTCGATGCAATGGA


20110601C-001576 : TCTCTGGGGCCCAGGCGTTGAAGTCGTCGTGTCCTCAGTGTCTGAAACCAGCCCCAAAAT
                   ---------+---------+---------+---------+---------+---------+ 519
TCH01_0048_C06.b : TCTCTGGGGCCCAGGCGTTGAAGTCGTCGTGTCCTCAGTGTCTGAAACCAGCCCCAAAAT
TCH01_0055_H06.b : TCTCTGGGGCCCAGGCGTTGAAGTCGTCGTGTCCTCAGTGTCTGAAACCAGCCCCAAAAT
TCH01_0055_H04.b : TCTCTGGGGCCCAGGCGTTGAAGTCGTCGTGTCCTCAGTGTCTGAAACCAGCCCCAAAAT
TCH01_0103_C06.b : TCTCTGGGGCCCAGGCGTTGAAGTCGTCGTGTCCTCAGTGTCTGAAACCAGCCCCAAAAT
TCH01_0083_B08.b : TCTCTGGGGCCCAGGCGTTGAAGTCGTCGTGTCCTCAGTGTCTGAAACCAGCCCCAAAAT


20110601C-001576 : CTTCCCACTGACTCTGGGGAGCAGCGAGCCTGCCGGATATGTGGTCATCGCCTGCCTGGT
                   ---------+---------+---------+---------+---------+---------+ 579
TCH01_0048_C06.b : CTTCCCACTGACTCTGGGGAGCAGCGAGCCTGCCGGATATGTGGTCATCGCCTGCCTGGT
TCH01_0055_H06.b : CTTCCCACTGACTCTGGGGAGCAGCGAGCCTGCCGGATATGTGGTCATCGCCTGCCTGGT
TCH01_0055_H04.b : CTTCCCACTGACTCTGGGGAGCAGCGAGCCTGCCGGATATGTGGTCATCGCCTGCCTGGT
TCH01_0103_C06.b : CTTCCCACTGACTCTGGGGAGCAGCGAGCCTGCCGGATATGTGGTCATCGCCTGCCTGGT
TCH01_0083_B08.b : CTTCCCACTGACTCTGGGGAGCAGCGAGCCTGCCGGATATGTGGTCATCGCCTGCCTGGT


20110601C-001576 : CCGGGACTTCTTCCCGTCAGAGCCCCTGACAGTAACCTGGAGCCCTAGTCGCGAGGGCGT
                   ---------+---------+---------+---------+---------+---------+ 639
TCH01_0048_C06.b : CCGGGACTTCTTCCCGTCAGAGCCCCTGACAGTAACCTGGAGCCCTAGTCGCGAGGGCGT
TCH01_0055_H06.b : CCGGGACTTCTTCCCGTCAGAGCCCCTGACAGTAACCTGGAGCCCTAGTCGCGAGGGCGT
TCH01_0055_H04.b : CCGGGACTTCTTCCCGTCAGAGCCCCTGACAGTAACCTGGAGCCCTAGTCGCGAGGGCGT
TCH01_0103_C06.b : CCGGGACTTCTTCCCGTCAGAGCCCCTGACAGTAACCTGGAGCCCTAGTCGCGAGGGCGT
TCH01_0083_B08.b : CCGGGACTTCTTCCCGTCAGAGCCCCTGACAGTAACCTGGAGCCCTAGTCGCGAGGGCGT


20110601C-001576 : TATTGTCAGAAACTTCCCCCCTGCGCAGGCCGGGGGCCTGTACACCATGAGCAGCCAGCT
                   ---------+---------+---------+---------+---------+---------+ 699
TCH01_0048_C06.b : TATTGTCAGAAACTTCCCCCCTGCGCAGGCCGGGGGCCTGTACACCATGAGCAGCCAGCT
TCH01_0055_H06.b : TATTGTCAGAAACTTCCCCCCTGCGCAGGCCGGGGGCCTGTACACCATGAGCAGCCAGCT
TCH01_0055_H04.b : TATTGTCAGAAACTTCCCCCCTGCGCAGGCCGGGGGCCTGTACACCATGAGCAGCCAGCT
TCH01_0103_C06.b : TATTGTCAGAAACTTCCCCCCTGCGCAGGCCGGGGGCCTGTACACCATGAGCAGCCAGCT
TCH01_0083_B08.b : TATTGTCAGAAACTTCCCCCCTGCGCAGGCCGGGGGCCTGTACACCATGAGCAGCCAGCT


20110601C-001576 : GACCTTGCCAGTCGAGCAGTGCCCAGCCGATCAGATCCTGAAGTGCCAAGTGCAGCACCT
                   ---------+---------+---------+---------+---------+---------+ 759
TCH01_0048_C06.b : GACCTTGCCAGTCGAGCAGTGCCCAGCCGATCAGATCCTGAAGTGCCAAGTGCAGCACCT
TCH01_0055_H06.b : GACCTTGCCAGTCGAGCAGTGCCCAGCCGATCAGATCCTGAAGTGCCNAGTGCAGCACCT
TCH01_0055_H04.b : GACCTTGCCAGTCGAGCAGTGCCCAGCCGATCAGATCCTGAAGTGCCAAGTGCAGCACCT
TCH01_0103_C06.b : GACCTTGCCAGTCGAGCAGTGCCCAGCCGATCAGATCCTGAAGTGCCAAGTGCAGCACCT
TCH01_0083_B08.b : GACCTTGCCAGTCGAGCAGTGCCCAGCCGATCAGATCCTGAAGTGCCAAGTGCAGCACCT


20110601C-001576 : CTCCAAATCCAGCCAGTCCGTGAACGTGCCCTGCAAAGATCCATGTCCCCAGTGCTGCAA
                   ---------+---------+---------+---------+---------+---------+ 819
TCH01_0048_C06.b : CTCCAAATCCAGCCAGTCCGTGAACGTGCCCTGCAAAAGTCCATGTCCCCAGTGCTGCAA
TCH01_0055_H06.b : CTCCAAATC*AGCCAGTCCGTGAACGTGCCCTGCAAAGATC*ATGTCCCCAGTGCTGCAA
TCH01_0055_H04.b : CTCCCAATCCAGCCAGTCCGTGAACGTGCCCTGCAAAGATCCATGTCCCCAGTGCTGCAA
TCH01_0103_C06.b : CTCCAAATCCAGCCAGTCCGTGAACGTGCCCTGCAAAGATCCATGTCCCCAGTGCTGCAA
TCH01_0083_B08.b : CCTCAAATCCAGCCAGTCCGTGAACGTGCCCTGCAAAGATCCATGTCCCCAGTGCTGCAA


20110601C-001576 : GCCCAGCCTGTCCCTGCAGCCACCAGCCCTTGCAGACCTGCTCCTGGGCTCCAATGCCAG
                   ---------+---------+---------+---------+---------+---------+ 879
TCH01_0048_C06.b : GCCCAGCCTGTCCCTGCAGCCACCAGCCCTTGCAGACCTGCTCCTGGGCTCCAATGCCAA
TCH01_0055_H06.b : AGCCAGCCTGTCCCTGCAGCCCACAGCCCTTGCAGACCTGCTCCTGGGCTCCAATGGCAG
TCH01_0055_H04.b : GCCCAGCCTGTCCCTGCAGCCACCAGCCCCTGCAGACCTGCTCCTGGGGTCCAATGCCAG
TCH01_0103_C06.b : GCCCAGCCTGTCCCTGCAGCCACCAGCCCTTGCAGACCTGCTCCTGGGCTCCNNATGCAG
TCH01_0083_B08.b : GCCCAGCCTGTCCCTGCAGCCACCAGCCCTTGCAGAACTGCTCCTGGGCTCCAATGGCAG


20110601C-001576 : CCTCACGTGCACACTCAGTGGCCTGAAAAAATCCGAGGGTGTCAGCTTCACCTGGCAGCC
                   ---------+---------+---------+---------+---------+---------+ 939
TCH01_0048_C06.b : GCTCACGTGCACACTCAGTGGCCTGAAAAAAATCCAAGGTGTCAGCTTCACCTGGCAACC
TCH01_0055_H06.b : CCTCACGTGCACACTCAGTGGGCTGAAAAAATCCGAGGGTGTCAGCTCACCTGGCAGCCC
TCH01_0055_H04.b : CCTCACGTGCACACTCAGTGGCCTGAAAAAATCCGAGGGTGTCAGCTTCACCTGGCAGCC
TCH01_0103_C06.b : CCTCACGTGCACACTCAGTGGCCTGAAAAAATCCGAAGGTGTCAGCTTCACCTGGCAGCC
TCH01_0083_B08.b : CCTCACGTGCACACTCAGTGGCCTGAAAAAATCCGAGGGTGTCAGCTTCACCTGGCAGCC


20110601C-001576 : *TCAGGTGGGAAGGATGGCGTCCAGGCGTCCCCCACGCGTGATTCCTGTGGCTGCTACAA
                   ---------+---------+---------+---------+---------+---------+ 998
TCH01_0048_C06.b : *TCAGGTGGGAAGGATGCNGTCCCGGCGTC*CCCACGCGTGATTCtgggggttgctaaac
TCH01_0055_H06.b : *TTCGGTGGGAAGGAATGCGTCCAGGCGTC*CCCACGCGTGATTCCTGTGGCTGCTACAG
TCH01_0055_H04.b : *TCAGGTGGGAAGGAATGCCTTCAGGCGTCCCCCACGCGTGATCTCTGTGGCTGCTACAA
TCH01_0103_C06.b : CTCAAGTGGGAGGGATGCCGTCCAGGCGTCCCCCACGCGTGATTCCTGTGGCTGCTACAA
TCH01_0083_B08.b : CTCAGGTGGGAAGGGATGCGTCCAGGCGTCCCCCACGCGTGGATTCTGTGGCTGCTACAG


20110601C-001576 : CGTGTTCAGCATCCTGCCA*GCCTTGGCTGATCCTTGGAACAAGGAAAGAACATTCTCCT
                   ---------+---------+---------+---------+---------+---------+ 1057
TCH01_0048_C06.b : tgtcccgcttcctgccaggttggctgattcttgtaaaaaggaaaaaatttttcctgcccg
TCH01_0055_H06.b : GGTGTCCAGAATCCTGgccgggttgtgctgatccttggaacaaaggaaaaaaatttccct
TCH01_0055_H04.b : CGTGGTCAGCATCCTGCCgggttgtgt                                
TCH01_0103_C06.b : CGTGTCCAGCATCTTGGCAAGGCTGTGCTGATCCTTGGAACAAGGAAGAAACATTCTCCT
TCH01_0083_B08.b : CGTGTTCAGCATCCTGCCA*GCCTTGGCTGATCCTTGGAACAAAGAAAGAA*ATCCTCCT


20110601C-001576 : GCCCCGC.....................................................
                   ---------+---------+---------+---------+---------+---------+ 1064
TCH01_0048_C06.b : cccccactttgaattgaaaagcggctaacccccctttcccaaaccaaggtgaaacttccg
TCH01_0055_H06.b : ggccccc                                                    
TCH01_0055_H04.b :                                                             
TCH01_0103_C06.b : GCccccccccccctctgatttgaagaagcgccttacgcccccttccccaaaccaaattga
TCH01_0083_B08.b : GCCCCGCgcccccctgatttaaaaaggggttaccgcccccttcccaaaccaaatgaaaac


20110601C-001576 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1064
TCH01_0048_C06.b : gcccggttcactgttgccccccttcgaaaaactgcccctcaaaacgggaacacaatgcct
TCH01_0055_H06.b :                                                             
TCH01_0055_H04.b :                                                             
TCH01_0103_C06.b : aactttctggcccagttcccttgttcccccccctcggaggaagtgcccccaatactgggg
TCH01_0083_B08.b : tttcgggcccaggtcccctttgtccccccctcgaagaatgggcccctagagtgggaaata


20110601C-001576 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1064
TCH01_0048_C06.b : gggggggg                                                   
TCH01_0055_H06.b :                                                             
TCH01_0055_H04.b :                                                             
TCH01_0103_C06.b : aactaaatcctggtggggcttctcccaaaaatttttgtttatttttaagggggaaaaacc
TCH01_0083_B08.b : aatgccgggggggggggttccccca                                  


20110601C-001576 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1064
TCH01_0048_C06.b :                                                             
TCH01_0055_H06.b :                                                             
TCH01_0055_H04.b :                                                             
TCH01_0103_C06.b : cctaaaatatctctggaaatctcaaaatggggacccccccccggcaggt          
TCH01_0083_B08.b :