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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-001760

Length: 1,263

Sequence:  [FASTA format sequence]
ACGGTCGGAA TCCCCAGCAC TGTGGCCTGC TTGAGTGCGT TACTCACCTC GACTCTTAGC
TTGTCGGGGA CGGTAACCAG GACTCGGTGT CTACTCCTGT TGCCTGCGCT TGCTGACCGG
TAACCACCAT GCGTGAGTGC ATCTCCATCC ACGTTGGCCA AGCTGGTGTC CAGATCGGCA
ATGCCTGCTG GGAGCTCTAC TGCCTGGAAC ACGGCATCCA GCCCGATGGC CAGATGCCGA
GTGACAAGAC CATTGGGGGA GGAGATGACT CCTTCAACAC CTTCTTCAGT GAGACAGGCG
CTGGCAAGCA TGTGCCCAGG GCAGTGTTTG TAGACCTGGA ACCCACAGTC ATTGATGAAG
TTCGCACTGG CACCTACCGC CAGCTCTTCC ACCCTGAGCA GCTCATCACA GGCAAGGAAG
ATGCTGCCAA TAACTATGCC CGAGGTCACT ACACCATTGG CAAGGAGATC ATTGACCTCG
TCTTGGACCG AATTCGGAAA CTGGCTGACC AGTGCACAGG TCTTCAGGGC TTCTTGGTTT
TCCACAGCTT TGGCGGGGGA ACGGGTTCTG GGTTCACCTC CCTGCTGATG GAACGTCTCT
CTGTCGATTA TGGCAAGAAG TCCAAGCTGG AGTTCTCCAT TTACCCAGCC CCCCAGGTTT
CCACAGCTGT AGTTGAGCCC TACAACTCCA TCCTCACCAC CCACACCACC CTGGAGCACT
CTGATTGTGC CTTCATGGTA GACAATGAGG CCATCTATGA CATCTGTCGT AGAAACCTTG
ATATTGAACG CCCAACCTAC ACTAATCTGA ACCGCCTTAT TAGCCAAATT GTGTCCTCCA
TCACTGCTTC CCTGAGGTTT GATGGGGCCC TGAATGTTGA TCTGACAGAA TTCCAGACCA
ACCTGGTGCC CTACCCCCGC ATCCATTTCC CTCTGGCCAC ATACGCCCCC GTCATCTCTG
CTGAAAAAGC CTACCATGAA CAGCTTACTG TAGCAGAGAT CACTAATGCT TGCTTTGAGC
CAGCCAACCA GATGGTGAAA TGTGACCCTC GCCATGGTAA ATACATGGCC TGCTGCCTGT
TGTACCGTGG TGACTTGGTT CCCAAAGACG TCAATGCCGC CATTGCCCCC CTCCAAACCA
AGCGCAACAT CCAGTTTGTG GACTGGTGCC CCACTGGCTT CAAGGTGGCA TTTATTACAG
ACCCCCACTG TGGTCCCTGG TGAAGACCCT GGCAAATACA GCGGGCAGTG TGCATGCTGA
GCA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TUBA1C	tubulin alpha-1C chain [Homo sapiens].	698	0.0	O
		TUBA1B	tubulin alpha-1B chain [Homo sapiens].	697	0.0	O
		TUBA1A	tubulin alpha-1A chain [Homo sapiens].	695	0.0	O
		TUBA3C	tubulin alpha-3C/D chain [Homo sapiens].	689	0.0	O
		TUBA3D	tubulin alpha-3C/D chain [Homo sapiens].	689	0.0	O
		TUBA3E	tubulin alpha-3E chain [Homo sapiens].	685	0.0	O
		TUBA4A	tubulin alpha-4A chain [Homo sapiens].	682	0.0	O
		TUBA8	tubulin alpha-8 chain isoform 1 [Homo sapiens].	633	0.0	O
		TUBAL3	tubulin alpha chain-like 3 isoform 1 [Homo sapiens].	534	e-152	O
		TUBA8	tubulin alpha-8 chain isoform 2 [Homo sapiens].	528	e-150	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tuba1c	tubulin alpha-1C chain [Mus musculus].	698	0.0	O
		Tuba1b	tubulin alpha-1B chain [Mus musculus].	697	0.0	O
		Tuba1a	tubulin alpha-1A chain [Mus musculus].	695	0.0	O
		Tuba3a	tubulin alpha-3 chain [Mus musculus].	689	0.0	O
		Tuba3b	tubulin alpha-3 chain [Mus musculus].	689	0.0	O
		Tuba4a	tubulin alpha-4A chain [Mus musculus].	682	0.0	O
		Gm5620	PREDICTED: tubulin alpha-1B chain isoform 1 [Mus musculus].	672	0.0	O
		Gm5620	PREDICTED: tubulin alpha-1B chain isoform 4 [Mus musculus].	672	0.0	O
		Tuba8	tubulin alpha-8 chain [Mus musculus].	633	0.0	O
		Tubal3	tubulin alpha chain-like 3 [Mus musculus].	531	e-151	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC608138	PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 11 [Canis familiaris].	698	0.0	O
		LOC608138	PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) isoform 2 [Canis familiaris].	698	0.0	O
		LOC608864	PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis familiaris].	696	0.0
		LOC608147	PREDICTED: similar to tubulin, alpha 1 isoform 12 [Canis familiaris].	695	0.0	O
		LOC608147	PREDICTED: similar to tubulin, alpha 1 isoform 13 [Canis familiaris].	695	0.0	O
		LOC608147	PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 11 [Canis familiaris].	695	0.0	O
		LOC608147	PREDICTED: similar to tubulin, alpha 1 isoform 1 [Canis familiaris].	695	0.0	O
		LOC610636	PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis familiaris].	693	0.0	O
		LOC608051	PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 2 [Canis familiaris].	689	0.0	O
		LOC608051	PREDICTED: similar to Tubulin alpha-3 chain (Alpha-tubulin 3) isoform 1 [Canis familiaris].	689	0.0	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		TUBA1B	tubulin alpha-1B chain [Bos taurus].	697	0.0	O
		TUBA1A	tubulin alpha-1B chain [Bos taurus].	695	0.0	O
		TUBA1D	tubulin alpha-1D chain [Bos taurus].	693	0.0	O
		TUBA1C	tubulin alpha-1C chain [Bos taurus].	693	0.0	O
		LOC100141266	PREDICTED: tubulin alpha-1C chain-like [Bos taurus].	690	0.0	O
		LOC787568	PREDICTED: tubulin alpha-1C chain-like isoform 1 [Bos taurus].	690	0.0	O
		LOC100295712	PREDICTED: GL12416-like [Bos taurus].	689	0.0	O
		TUBA3E	tubulin alpha-3 chain [Bos taurus].	689	0.0	O
		LOC100295712	PREDICTED: GL12416-like [Bos taurus].	689	0.0	O
		LOC787568	PREDICTED: tubulin alpha-1C chain-like [Bos taurus].	688	0.0	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100127131	PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].	697	0.0	O
		TUBA1B	tubulin alpha-1B chain [Sus scrofa].	697	0.0	O
		TUBA1A	PREDICTED: tubulin alpha-1D chain [Sus scrofa].	693	0.0	O
		LOC100510930	PREDICTED: tubulin alpha-3 chain-like [Sus scrofa].	689	0.0	O
		TUBA3D	PREDICTED: tubulin alpha-3 chain [Sus scrofa].	689	0.0	O
		TUBA4A	PREDICTED: tubulin alpha-4A chain [Sus scrofa].	682	0.0	O
		LOC100518253	PREDICTED: tubulin alpha-8 chain-like [Sus scrofa].	622	e-178
		LOC100127131	PREDICTED: tubulin alpha-1C chain isoform 3 [Sus scrofa].	620	e-178	O
		LOC100127131	PREDICTED: tubulin alpha-1C chain isoform 2 [Sus scrofa].	620	e-178	O
		LOC100621514	PREDICTED: tubulin alpha-8 chain-like [Sus scrofa].	554	e-158