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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-002297

Length: 1,540

Sequence:  [FASTA format sequence]
GCATTGTGGG AATCCCGGGG CCGCGGCGAC TGGTTCCAGT TCACTCGGCA GCGGAGCCGG
GCGGAGGGGG CGAGCGCGGG GCGCGCGGGC GGGAAGCGAG GAGGCGGGCG GGCCAGTGAG
GAGAGCGGAG AGAAAAGGCG CGAGCGGCCG AGAGGGCACG GGCCGGACAC CTTGCTGCTG
CCGCCGCCGC CGCCGCTGCG GCCGAGCCTC CCCTGAGCTT ACTGATCCAT CTCCAGGGCC
ACCGCCATGT CCAGCCGGGG TGGGAAGAAG AAGTCCACCA AAACCTCCCG GTCCGCCAAG
GCGGGCGTCA TCTTCCCCGT GGGCCGGATG CTGCGGTACA TCAAGAAAGG CCACCCCAAG
TACAGGATTG GAGTGGGGGC GCCGGTGTAC ATGGCCGCCG TCCTGGAGTA CCTGACAGCG
GAGATTCTGG AACTGGCTGG CAACGCAGCA AGAGACAACA AGAAGGGCCG GGTCACCCCC
CGACACATCC TGCTGGCCGT GGCCAACGAT GAAGAGCTCA ATCAGCTGCT AAAAGGAGTC
ACCATAGCCA GCGGAGGGGT GTTACCGAAC ATCCACCCGG AGTTGCTAGC GAAGAAACGA
GGATCCAAAG GGAAGTTGGA AGCCATCATC ACGCCACCCC CAGCCAAAAA GGCCAAGTCT
CCGTCCCAGA AGAAGCCCGT GTCTAAGAAA ACAGGCGGCA AGAAGGGGGC CCGGAAATCC
AAGAAGCAGG GAGAAGTCAG CAAGGCAGCC AGCGCCGACA GCACAACTGA GGGCACTCCC
GCCGACGGCT TCACCGTGCT GTCCACCAAG AGCCTCTTTC TCGGCCAGAA GTTGCAAGTT
GTACAGGCTG ACATTGCCTC GATCGACAGT GACGCTGTCG TTCACCCGAC AAACACTGAC
TTCTACACCG GTGGTGAAGT AGGAAACACG CTGGAGAAGA AGGGTGGCAA GGAGTTTGTG
GAAGCTGTTC TGGAACTCCG GAAAAAGAAC GGGCCCTTGG AAGTAGCCGG AGCTGCTGTC
AGTGCGGGCC ATGGCCTGCC CGCCAAGTTT GTGATCCACT GTAACAGTCC CGTGTGGGGT
GCAGACAAGT GTGAGGAGCT TCTGGAAAAG ACAGTGAAGA ACTGCTTGGC CCTGGCAGAC
GATAAGAAGC TCAAGTCCAT CGCCTTTCCA TCCATCGGCA GCGGCAGGAA ACGGTTTCCG
AAGCAGACGG CAGCTCAGCT GATCCTGANG GCCATCTCCA GCTACTTCGT GTCACCCATG
TCCTCTTCCA TCAAAAACGT GTATTTTGTG CTGTTTGACA GCGAGAGTAT AGGCATCTAC
GTGCAGGAAA ATGGCCAGCT GGACGCAAAC TANGCTGAAG AACTGCAGAA ACAGCCCGGC
ACATGCCCCC GCCTCCACCT GAAAGAAAAG CAAGAAATAT CCCCCTCCGC TCCTCGGGGA
AGGCGGGAAC CTCTTCAATT TACATTTTTG CCCATCAAGG AAAAATGAGG TTTTGGGTTT
CAAGTTTAAT GGTTTTTGAC CTTCAAAAAG GTTTTTCCGT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		H2AFY	core histone macro-H2A.1 isoform 1 [Homo sapiens].	597	e-170	O
		H2AFY	core histone macro-H2A.1 isoform 2 [Homo sapiens].	560	e-159	O
		H2AFY	core histone macro-H2A.1 isoform 2 [Homo sapiens].	560	e-159	O
		H2AFY	core histone macro-H2A.1 isoform 3 [Homo sapiens].	555	e-158	O
		H2AFY2	core histone macro-H2A.2 [Homo sapiens].	419	e-117	O
		H2AFX	histone H2A.x [Homo sapiens].	142	1e-33	O
		HIST2H2AB	histone H2A type 2-B [Homo sapiens].	140	4e-33	O
		HIST1H2AA	histone H2A type 1-A [Homo sapiens].	139	9e-33	O
		HIST2H2AA3	histone H2A type 2-A [Homo sapiens].	138	1e-32	O
		HIST2H2AA4	histone H2A type 2-A [Homo sapiens].	138	1e-32	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		H2afy	core histone macro-H2A.1 isoform 4 [Mus musculus].	600	e-171	O
		H2afy	core histone macro-H2A.1 isoform 3 [Mus musculus].	595	e-170	O
		H2afy	core histone macro-H2A.1 isoform 2 [Mus musculus].	556	e-158	O
		H2afy	core histone macro-H2A.1 isoform 1 [Mus musculus].	551	e-157	O
		H2afy2	core histone macro-H2A.2 [Mus musculus].	420	e-117	O
		H2afx	histone H2A.x [Mus musculus].	142	9e-34	O
		Hist2h2ab	histone H2A type 2-B [Mus musculus].	141	2e-33	O
		Hist1h2al	PREDICTED: src substrate cortactin [Mus musculus].	138	1e-32
		Hist2h2aa1	histone H2A type 2-A [Mus musculus].	138	1e-32	O
		Hist1h2al	PREDICTED: src substrate cortactin [Mus musculus].	138	1e-32

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC481514	PREDICTED: similar to H2A histone family, member Y isoform 3 [Canis familiaris].	557	e-159	O
		LOC489024	PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2) isoform 3 [Canis familiaris].	422	e-118	O
		LOC489024	PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2) isoform 6 [Canis familiaris].	422	e-118	O
		LOC489024	PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2) isoform 7 [Canis familiaris].	421	e-117	O
		LOC489024	PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2) isoform 5 [Canis familiaris].	416	e-116	O
		LOC489024	PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2) isoform 1 [Canis familiaris].	249	7e-66	O
		LOC489024	PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2) isoform 4 [Canis familiaris].	189	6e-48	O
		LOC489372	PREDICTED: similar to Histone H2A.x (H2a/x) [Canis familiaris].	142	1e-33
		LOC483175	PREDICTED: similar to histone H2A [Canis familiaris].	140	4e-33	O
		LOC608631	PREDICTED: similar to Histone H2A.o (H2A/o) (H2A.2) (H2a-615) [Canis familiaris].	138	1e-32	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		H2AFY	H2A histone family, member Y [Bos taurus].	560	e-159	O
		H2AFY2	H2A histone family, member Y2 [Bos taurus].	417	e-116	O
		H2AFX	H2A histone family, member X [Bos taurus].	142	1e-33	O
		HIST2H2AB	PREDICTED: histone cluster 2, H2ab [Bos taurus].	140	4e-33	O
		HIST2H2AB	PREDICTED: histone cluster 2, H2ab [Bos taurus].	140	4e-33	O
		LOC541108	PREDICTED: histone cluster 2, H2aa3-like [Bos taurus].	138	1e-32	O
		LOC100297758	PREDICTED: histone cluster 2, H2aa3-like [Bos taurus].	138	1e-32	O
		LOC100297758	PREDICTED: histone cluster 2, H2aa3-like [Bos taurus].	138	1e-32	O
		HIST2H2AC	histone H2A type 2-C [Bos taurus].	137	2e-32	O
		HIST3H2A	histone cluster 3, H2a [Bos taurus].	137	2e-32	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		H2AFY	PREDICTED: core histone macro-H2A.1 isoform 2 [Sus scrofa].	560	e-160	O
		H2AFY	PREDICTED: core histone macro-H2A.1 isoform 1 [Sus scrofa].	555	e-158	O
		LOC100522201	PREDICTED: histone H2A.x-like [Sus scrofa].	142	7e-34	O
		LOC100154181	PREDICTED: histone H2A type 2-B-like [Sus scrofa].	140	3e-33	O
		LOC100153329	PREDICTED: histone H2A type 1-A-like [Sus scrofa].	139	6e-33	O
		LOC100524803	PREDICTED: histone H2A type 2-A-like [Sus scrofa].	138	7e-33	O
		H2AFY2	PREDICTED: core histone macro-H2A.2, partial [Sus scrofa].	138	1e-32	O
		LOC100154508	PREDICTED: histone H2A type 1-F-like [Sus scrofa].	137	1e-32	O
		LOC100627582	PREDICTED: histone H2A type 1-like [Sus scrofa].	137	1e-32	O
		LOC100623449	PREDICTED: histone H2A type 1-F-like [Sus scrofa].	137	1e-32	O