Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-002418

Sequence: [FASTA format sequence] TTTCAGTTCC TTTGTAAGAA GAGCTCAGAA TCACAAGAGG GAAACTTGCC CCAAAGATGA GCCTCGCATG TACAACCTTG GCCAGCTTCC TCCTGATTTT CATTGTTTCC AACAAAGGTA CAGTCTCTCA AATTACTGAG GTTGTCTGGG GCATCGTGGA TCAAGACATC AACCTGGACA TTCCTGAACT TTCAAAACAT GATAACGTAG ATCATATACG ATGGCAGAAG AATGAAAACA AGATCGCAGA ATTTAAAAAA AACAAAGAAA CTCACCCTGT GAAAGACACA TACATGATGT TACCAAATGG AACTCTGAGA ATTAAAGATC TGAAGAGAGA TGATGAGGGT ATCTACAAGG TAACTGTCTA TGCTACGGAT GGAAAACACA TGCTGGAGAG AAAATTTGAT TTGCAGATTC TAGATGGGGT CTCAAAACCT GTAATCTCAT GGAGCTGTGC CAACAAAACG GTGACCTGTG AGGTAGCAGA AGGAAGTGAC CCTAAGTTAA AACTGTATGT AAATAAGTCC ACTGCCAGAG AAGGTCGTCA GAAGGTCATC CTGTGGAAGT GGAACACCAA ATGGAGCACA TTATTCAAGT GTGTGGCCAG TAACAACGCC AGTGAGCAAA TCAGCATGGT GACCATCAGT TGTACGGGGC AAGGTCTGGA TATCTATCTC ATCATCGGCA TCTGCGGAGG AGGCACCGTA TTCCTCATCT TCATAGCACT ACTCATATTC TACACCAGCA AGAGGAAAAA GCAGAGCAGC AGGAGAAATG ATGAGGAGCT GGAGATAAGA GCGAAGAGAG CGAGCCCCGA GGAAAGGGGC CGGAAGCCCC ATCCATTTCC AGGCTCAACT CCTCAAAATC CGGTCATTTC CCAAACTCCT CCAATGCCTG GTCATCGTTC TCAGGCACCT ACTCCTCGTC CCGGGCCTCC TGGCCCCCGT GTCCAGCACC CACAAAAAAA AAGGCCTCCC CCTACCCCGG GCACACAAGT TCACCAGCAA AAAGGCCTCC CCCTCCCCCA GCCTCCAGTT TCAACAAAAC CTACCCATGA NGNNCAAAGA AACTCATAAC TCTGTCTCCT GATGCGNNTG TCCCTTCCCT CTA

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
CD2 T-cell surface antigen CD2 precursor [Homo sapiens]. 377 e-104 O

HEPACAM hepatocyte cell adhesion molecule precursor [Homo sapiens]. 50.4 3e-06 O

		Locus	Definition	Score	E value	FL
		CD2	T-cell surface antigen CD2 precursor [Homo sapiens].	377	e-104	O
		HEPACAM	hepatocyte cell adhesion molecule precursor [Homo sapiens].	50.4	3e-06	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Cd2 T-cell surface antigen CD2 precursor [Mus musculus]. 278 7e-75 O

Slamf7 SLAM family member 7 precursor [Mus musculus]. 55.5 8e-08 O

Hepacam hepatocyte cell adhesion molecule precursor [Mus musculus]. 50.4 2e-06 O

Locus	Definition	Score	E value	FL
Cd2	T-cell surface antigen CD2 precursor [Mus musculus].	278	7e-75	O
Slamf7	SLAM family member 7 precursor [Mus musculus].	55.5	8e-08	O
Hepacam	hepatocyte cell adhesion molecule precursor [Mus musculus].	50.4	2e-06	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC607448 PREDICTED: similar to T-cell surface antigen CD2 precursor (T-cell surface antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Erythrocyte receptor) (Rosette receptor) [Canis familiaris]. 330 1e-90 O

LOC489305 PREDICTED: similar to hepatocyte cell adhesion molecule [Canis familiaris]. 50.8 2e-06 O

		Locus	Definition	Score	E value	FL
		LOC607448	PREDICTED: similar to T-cell surface antigen CD2 precursor (T-cell surface antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Erythrocyte receptor) (Rosette receptor) [Canis familiaris].	330	1e-90	O
		LOC489305	PREDICTED: similar to hepatocyte cell adhesion molecule [Canis familiaris].	50.8	2e-06	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
CD2 T-cell surface antigen CD2 [Bos taurus]. 370 e-102 O

HEPACAM hepatocyte cell adhesion molecule precursor [Bos taurus]. 50.4 3e-06 O

		Locus	Definition	Score	E value	FL
		CD2	T-cell surface antigen CD2 [Bos taurus].	370	e-102	O
		HEPACAM	hepatocyte cell adhesion molecule precursor [Bos taurus].	50.4	3e-06	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
CD2 T-cell surface antigen CD2 [Sus scrofa]. 650 0.0 O

		Locus	Definition	Score	E value	FL
		CD2	T-cell surface antigen CD2 [Sus scrofa].	650	0.0	O

Assembly Members: 4 TOP

Library Plate Loc. Read Name Accession Full Seq.

PBL01 0104 C12 PBL01_0104_C12.b BW975323
PST01 0068 F12 PST01_0068_F12.b FS702235 AK396646
THY01 0054 A04 THY01_0054_A04.b BP159712
THY01 0094 F09 THY01_0094_F09.b BP166482

SNP: 1 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
449 A 2 0 0.500 W S TCA/S
C 2 0 0.500 TCC/S

Alignment: TOP

20110601C-002418 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
PST01_0068_F12.b :                                            nnnnggctcactgtggc
PBL01_0104_C12.b :                            naaaagacaaacaxxxxxxxxxxxxxxxxxxxx
THY01_0054_A04.b : cttttgggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0094_F09.b :                   caaggctctccaacgcattgtgxxxxxxxxxxxxxxxxxxxx


20110601C-002418 : ..........TTTCAGTTCCTTTGTAAGAAGAGCTCAGAATCACAAGAGGGAAACTTGCC
                   ---------+---------+---------+---------+---------+---------+ 50
PST01_0068_F12.b : tatggggttaTTTCAGTTCCTTTCGTAGAAGAGCTCAGAATCACAAGAGGGAAACTTGCC
PBL01_0104_C12.b : xxxxxxxxxxxxxxxxxxxxxxcGTAAGAAGAGCTCAGAATCACAAGAGGGAAACTTGCC
THY01_0054_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxTAAGAAGAGCTCAGAATCACAAGAGGGAAACTTGCC
THY01_0094_F09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAACTTGCC


20110601C-002418 : CCAAAGATGAGCCTCGCATGTACAACCTTGGCCAGCTTCCTCCTGATTTTCATTGTTTCC
                   ---------+---------+---------+---------+---------+---------+ 110
PST01_0068_F12.b : CCAAAGATGAGCCTCGCATGTACAACCTTGGCCAGCTTCCTCCTGATTTTCATTGTTTCC
PBL01_0104_C12.b : CCAAAGATGAGCCTCGCATGTACAACCTTGGCCAGCTTCCTCCTGATTTTCATTGTTTCC
THY01_0054_A04.b : CCAAAGATGAGCCTCGCATGTACAACCTTGGCCAGCTTCCTCCTGATTTTCATTGTTTCC
THY01_0094_F09.b : CCAAAGATGAGCCTCGCATGTACAACCTTGGCCAGCTTCCTCCTGATTTTCATTGTTTCC


20110601C-002418 : AACAAAGGTACAGTCTCTCAAATTACTGAGGTTGTCTGGGGCATCGTGGATCAAGACATC
                   ---------+---------+---------+---------+---------+---------+ 170
PST01_0068_F12.b : AACAAAGGTACAGTCTCTCAAATTACTGAGGTTGTCTGGGGCATCGTGGATCAAGACATC
PBL01_0104_C12.b : AACAAAGGTACAGTCTCTCAAATTACTGAGGTTGTCTGGGGCATCGTGGATCAAGACATC
THY01_0054_A04.b : AACAAAGGTACAGTCTCTCAAATTACTGAGGTTGTCTGGGGCATCGTGGATCAAGACATC
THY01_0094_F09.b : AACAAAGGTACAGTCTCTCAAATTACTGAGGTTGTCTGGGGCATCGTGGATCAAGACATC


20110601C-002418 : AACCTGGACATTCCTGAACTTTCAAAACATGATAACGTAGATCATATACGATGGCAGAAG
                   ---------+---------+---------+---------+---------+---------+ 230
PST01_0068_F12.b : AACCTGGACATTCCTGAACTTTCAAAACATGATAACGTAGATCATATACGATGGCAGAAG
PBL01_0104_C12.b : AACCTGGACATTCCTGAACTTTCAAAACATGATAACGTAGATCATATACGATGGCAGAAG
THY01_0054_A04.b : AACCTGGACATTCCTGAACTTTCAAAACATGATAACGTAGATCATATACGATGGCAGAAG
THY01_0094_F09.b : AACCTGGACATTCCTGAACTTTCAAAACATGATAACGTAGATCATATACGATGGCAGAAG


20110601C-002418 : AATGAAAACAAGATCGCAGAATTTAAAAAAAACAAAGAAACTCACCCTGTGAAAGACACA
                   ---------+---------+---------+---------+---------+---------+ 290
PST01_0068_F12.b : AATGAAAACAAGATCGCAGAATTTAAAAAAAACAAAGAAACTCACCCTGTGAAAGACACA
PBL01_0104_C12.b : AATGAAAACAAGATCGCAGAATTTAAAAAAAACAAAGAAACTCACCCTGTGAAAGACACA
THY01_0054_A04.b : AATGAAAACAAGATCGCAGAATTTAAAAAAAACAAAGAAACTCACCCTGTGAAAGACACA
THY01_0094_F09.b : AATGAAAACAAGATCGCAGAATTTAAAAAAAACAAAGAAACTCACCCTGTGAAAGACACA


20110601C-002418 : TACATGATGTTACCAAATGGAACTCTGAGAATTAAAGATCTGAAGAGAGATGATGAGGGT
                   ---------+---------+---------+---------+---------+---------+ 350
PST01_0068_F12.b : TACATGATGTTACCAAATGGAACTCTGAGAATTAAAGATCTGAAGAGAGATGATGAGGGT
PBL01_0104_C12.b : TACATGATGTTACCAAATGGAACTCTGAGAATTAAAGATCTGAAGAGAGATGATGAGGGT
THY01_0054_A04.b : TACATGATGTTACCAAATGGAACTCTGAGAATTAAAGATCTGAAGAGAGATGATGAGGGT
THY01_0094_F09.b : TACATGATGTTACCAAATGGAACTCTGAGAATTAAAGATCTGAAGAGAGATGATGAGGGT


20110601C-002418 : ATCTACAAGGTAACTGTCTATGCTACGGATGGAAAACACATGCTGGAGAGAAAATTTGAT
                   ---------+---------+---------+---------+---------+---------+ 410
PST01_0068_F12.b : ATCTACAAGGTAACTGTCTATGCTACGGATGGAAAACACATGCTGGAGAGAAAATTTGAT
PBL01_0104_C12.b : ATCTACAAGGTAACTGTCTATGCTACGGATGGAAAACACATGCTGGAGAGAAAATTTGAT
THY01_0054_A04.b : ATCTACAAGGTAACTGTCTATGCTACGGATGGAAAACACATGCTGGAGAGAAAATTTGAT
THY01_0094_F09.b : ATCTACAAGGTAACTGTCTATGCTACGGATGGAAAACACATGCTGGAGAGAAAATTTGAT


20110601C-002418 : TTGCAGATTCTAGATGGGGTCTCAAAACCTGTAATCTCATGGAGCTGTGCCAACAAAACG
                   ---------+---------+---------+---------+---------+---------+ 470
PST01_0068_F12.b : TTGCAGATTCTAGATGGGGTCTCAAAACCTGTAATCTCATGGAGCTGTGCCAACAAAACG
PBL01_0104_C12.b : TTGCAGATTCTAGATGGGGTCTCAGAACCTGTAATCTCATGGAGCTGTGCCAACAAAACG
THY01_0054_A04.b : TTGCAGATTCTAGATGGGGTCTCAAAACCTGTAATCTCCTGGAGCTGTGCCAACAAAACG
THY01_0094_F09.b : TTGCAGATTCTAGATGGGGTCTCAAAACCTGTAATCTCCTGGAGCTGTGCCAACAAAACG


20110601C-002418 : GTGACCTGTGAGGTAGCAGAAGGAAGTGACCCTAAGTTAAAACTGTATGTAAATAAGTCC
                   ---------+---------+---------+---------+---------+---------+ 530
PST01_0068_F12.b : GTGACCTGTGAGGTAGCAGAAGGAAGTGACCCTAAGTTAAA*CTGTATGTAAATAAGTCC
PBL01_0104_C12.b : GTGACCTGTGAGGTAGCAGAAGGAAGTGACCCTAAGTTAAAACTGTATGTAAATAAGTCC
THY01_0054_A04.b : GTGACCTGTGAGGTAGCAGAAGGAAGTGACCCTAAGTTAAAACTGTATGTAAATAAGTCC
THY01_0094_F09.b : GTGACCTGTGAGGTAGCAGAAGGAAGTGACCCTAAGTTAAAACTGTATGTAAATAAGTCC


20110601C-002418 : ACTGCCAGAGAAGGTCGTCAGAAGGTCATCCTGTGGAAGTGGAACACCAAATGGAGCACA
                   ---------+---------+---------+---------+---------+---------+ 590
PST01_0068_F12.b : ACTGCCAGAGAAGGTCGTCAGAAGGTCATCCTGTGGAAGTGGAACACCAAATGGAGCACA
PBL01_0104_C12.b : ACTGCCAGAGAAGGTCGTCAGAAGGTCATCCTGTGGAAGTGGAACACCAAATGGAGCACA
THY01_0054_A04.b : ACTGCCAGAGAAGGTCGTCAGAAGGTCATCCTGTGGAAGTGGAACACCAAATGGAGCACA
THY01_0094_F09.b : ACTGCCAGAGAAGGTCGTCAGAAGGTCATCCTGTGGAAGTGGAACACCAAATGGAGCACA


20110601C-002418 : TTATTCAAGTGTGTGGCCAGTAACAACGCCAGTGAGCAAATCAGCATGGTGACCATCAGT
                   ---------+---------+---------+---------+---------+---------+ 650
PST01_0068_F12.b : TTATTCAAGTGTGTGGCCAGTAACAACGCCAGTGAGCAAATCAGCATGGTGACCATCAGT
PBL01_0104_C12.b : TTATTCAAGTGTGTGGCCAGTAACAACGCCAGTGAGCAAATCAGCATGGTGACCATCAGT
THY01_0054_A04.b : TTATTCAAGTGTGTGGCCAGTAACAACGCCAGTGAGCAAATCAGCATGGTGACCATCAGT
THY01_0094_F09.b : TTATTCAAGTGTGTGGCCAGTAACAACGCCNGTGAGCAAATCAGCATGGTGACCATCAGT


20110601C-002418 : TGTACGGGGCAAGGTCTGGATATCTATCTCATCATCGGCATCTGCGGAGGAGGCACCGTA
                   ---------+---------+---------+---------+---------+---------+ 710
PST01_0068_F12.b : TGTACGGGGCAAGGTCTGGATATCTATCTCATCATCGGCATCTGCGGAGGAGGCACCGTA
PBL01_0104_C12.b : TGTACGGGGCAAGGTCTGGATATCTATCTCATCATCGGCATCTGCGGAGGAGGCACCGTA
THY01_0054_A04.b : TGTACGGGGCAAGGTCTGGATATCTATCTCATCATCGGCATCTGCGGAGGAGGCACCGTA
THY01_0094_F09.b : TGTACGGGGCAAGGTCTGGATATCTATCTCATCATCGGCATCTGCGGAGGAGGCACCGTA


20110601C-002418 : TTCCTCATCTTCATAGCACTACTCATATTCTACACCAGCAAGAGGAAAAAGCAGAGCAGC
                   ---------+---------+---------+---------+---------+---------+ 770
PST01_0068_F12.b : TTCCTCATCTTCATAGCACTACTCATATTCTACACCAGCAAGAGGAAAAAGCAGAGCAGC
PBL01_0104_C12.b : TTCCTCATCTTCATAGCACTACTCATATTCTACACCAGCAAGAGGAAAAAGCAGAGCAGC
THY01_0054_A04.b : TTCCTCATCTTCATAGCACTACTCATATTCTACACCAGCAAGAGGAAAAAGCAGAGCAGC
THY01_0094_F09.b : TTCCTCATCTTCATAGCACTACTCATATTCTACACCAGCAAGAGGAAAAAGCAGAGCAGC


20110601C-002418 : AGGAGAAATGATGAGGAGCTGGAGATAAGAGCGAAGAGAGCGAGCCCCGAGG*AAAGGGG
                   ---------+---------+---------+---------+---------+---------+ 829
PST01_0068_F12.b : AGGAGAAATGATGAGGAGCTGGAGATAAGAGCGAAGAGAGCGAGCCCCGAGG*AAAGGGG
PBL01_0104_C12.b : AGGAGAAATGATGAGGAGCTGGAGATAAGAGCGAAGAGAGCGGGCCCCGAGG*AAAGGGG
THY01_0054_A04.b : AGGAGAAATGATGAGGAGCTGGAGATAAGAGCGAAGAGAGCGAGCCCCGAGGGAAAGGGC
THY01_0094_F09.b : AGGAGAAATGATGAGGAGCTGGAGATAAGAGCGAAGAGAGCGAGCCCCGAGG*AAAGGGG


20110601C-002418 : CCGGAAGCCCCATCCATTTCCAGGCTCAACTCCTCAAAATCCGGTCATTTCCCAAACTCC
                   ---------+---------+---------+---------+---------+---------+ 889
PST01_0068_F12.b : CCGGAAGCCCCATCCATTTCCAGGCTCAACTCCNTCAAATCCGGTCATTTCCCAAACTCC
PBL01_0104_C12.b : CCGGAAGCCCCATCCATTTCCAGGCTCAACTCCTCAAAATCCGGTCATTTCCCAAACTCC
THY01_0054_A04.b : CGGGAAGCCCCATCCATTTCCAGGCTCAACTCCTCAAAATCCGGTCATTTTCCAAACTCC
THY01_0094_F09.b : CCGGAAGCCCCATCCATTTCCAGGCTCAACTCCTCAAAATCCGGTCATTTCCCAAACTCC


20110601C-002418 : TCCAATGCCTGGTCATCGTTCTCAGGCACCTACTCCTCGTCCCGGGCCTCCTGGCCCCCG
                   ---------+---------+---------+---------+---------+---------+ 949
PST01_0068_F12.b : TCCAATGCCTGGTCATCGTTCTCANGCACCTACTCCNTCGTCCGGGCCTCCCTGGCCCCG
PBL01_0104_C12.b : TCCNAATGCTGGTCATCGTTCTCAGGCACCTACTCCTCGTCCCGGGCCTCCTGGCCCCCC
THY01_0054_A04.b : TCTAATGCCTGGTCATCGTTCTCAAGCAACTACTCCTCGTCCCGGGCCTCCGGCCCCCCC
THY01_0094_F09.b : TCCCATGCCTGGTCATCGGTCTCAGGCGCCTACTCCTCGTCCCGGGCCTCCTGGGCCCCG


20110601C-002418 : TGTCCAGCACCCACAAAAAAAAAGGCCTCCCCCTACCCCGGGCACACAAGTT*CACCAGC
                   ---------+---------+---------+---------+---------+---------+ 1008
PST01_0068_F12.b : TGTCCAGCACCCACAGAAGAAGAAGCCTCCTCCCTACCCGGGCACACAAGTT*CACCAGC
PBL01_0104_C12.b : GTGTCAGCACCCACAGAAGAAGAAGCCCTCCTCTACCTCGGGCACACAAGTT*CACCAGC
THY01_0054_A04.b : TGTCCAGAACCAAAAAAAAAAAAGGCCTCCTCCTACCCCGGGCACACAAGTTTCACCACC
THY01_0094_F09.b : TGTCCAACACCCACAAAAAAAAAGGCCTCCCTCTACCCCGGCCACACAAGTTCACCAACA


20110601C-002418 : AAAAAGGCCTCCCCCTCCCCCAGCCTCCAGTTTCAACAAAACCTACCCATGANGNNCAAA
                   ---------+---------+---------+---------+---------+---------+ 1068
PST01_0068_F12.b : AAAAGGGCCTCCCCTCCCCNNAGCCTCGAGT*TCAACAAAACCTACCCATGANGNNCAAA
PBL01_0104_C12.b : AAAAGGCCCCTCCCCTCCCaaagctcgagttcaacaaaacctaccatgaaggccaagaaa
THY01_0054_A04.b : AAAAAGGCCTCCCCCTCCCCCAGCCCCCAGTTTCAACAAAACCTACCCcagaagggccaa
THY01_0094_F09.b : AAAAAGGCCCTCCCCTCCCCcagccctccagttcaaccaaaacctaacccatgaaggcca


20110601C-002418 : GAAACTCATAACTCTGTCTCCTGATGCGNNTGTCCCTTCCCTCTA...............
                   ---------+---------+---------+---------+---------+---------+ 1113
PST01_0068_F12.b : GAAACTCATAACTCTGTCTCCTGATGCGNNTGTCCCTTCCCTCTAntaaaagaaacngaa
PBL01_0104_C12.b : ctcatactctgtctcctgagccggtggcccttcccccaattaaaaaaaaaaaaaactgtc
THY01_0054_A04.b : aaaaaattcaaaaacttttttttcccgattcgtgttttccctttccctctaaattaaaaa
THY01_0094_F09.b : aaaaaaactccaaactctttcctcccgaattcggtttgtccctttcccctcttattaaaa


20110601C-002418 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1113
PST01_0068_F12.b : actgtccttttctgtaaaaggaacttggagttcctcaatccagggcgaagtctaacgcct
PBL01_0104_C12.b : cttcctgtaaagagacctggggattttccccctccaggcggaatggtaacccttcataaa
THY01_0054_A04.b : aaaaaaaaaaac                                               
THY01_0094_F09.b : aaaaaacaaaaaactttcccttttcctgttaaaaa                        


20110601C-002418 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1113
PST01_0068_F12.b : tcatcaggtggttcttcagggaaacggacaaccccaaccaagaacccaaccctgttgtca
PBL01_0104_C12.b : ggggttttcagggggacgggaaaaccccaaacccagaaccaacccgtttgttcctttaaa
THY01_0054_A04.b :                                                             
THY01_0094_F09.b :                                                             


20110601C-002418 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1113
PST01_0068_F12.b : attaattacccccagcggaaattggagttgggccctccccatgcgaaagaaa       
PBL01_0104_C12.b : taccccaaggcggaaattggagtttggcccccccccgcagaa                 
THY01_0054_A04.b :                                                             
THY01_0094_F09.b :