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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-002497

Length: 967

Sequence:  [FASTA format sequence]
GGGGTGGGGG CAGTGGCAGT GACAGTGACT GCATGAGTGA GAAACAGCCA CAGTAGCGCT
TCAACGGCAT CAGAGGTCGG CCTGCCACCT GAGGGGGGCA ACTCCCAGAA GACCTGCCTG
GGAGGTGCAA AGAAGAGACA CCAGCACCCA GCTGGGGAGG TGCCAGCTCC CCCAAGGCCA
CAGCTGGGGC ACAGGAAGAA CTTCCTGGGC AGGGGCCATG GCCCGGTCAC CTCTCTGCTG
GCTGTGGGTT CTGGGTACCC TGGCAGGGCT CTCCGCTACC CCAGCCCCCC AGAGCTGTCC
AGAGAAGCAC TACTGGGCTC GGGGCGAACT GTGCTGCCAG ATGTGCCAGC CAGGAACGTT
CCTGGTGAAG GACTGTGACC AGCACGGAAA GGCTGCTCGC TGTGATCCGT GTAAACAGGG
GGTGTCCTTC TCACCAGACT ACCACAGCCG GCCCCACTGT GAGAGCTGCC GGCACTGTAA
CTCTGGTCTT TTCGTTCAAA ACTGCACCCT CACTGCCAAC GCCAAGTGTG CCTGCCCTGA
GGGCTGGCAG TGCAGGGACA AGGAGTGTAC AGAGTGTGAT GGTCCAGCCC AGACCCCAGG
CCCACACCCA CAACCCTCCC ACTCACCTTA TGCTGAAGCA ATACCAGAGG CCAGGACCAG
CCGGTACACT CAGACTCTGG CTGACGTCGG GCAGGTTCCT GTCCCAACTA TCTCCACCTA
CTTGTCTTAC ACCGGAGAAT GTCCAGTGGC GCCAGCGGAG CCTTGTCCTT ACAGCTACCC
CAGGGAGGAG GAGGGCAGCG CCATCCCCAT TCAGGAAGAT TACCGAAACC AGAGCTCGCT
TCCTACCTCT GAGCCAGCGC TCCGCGGAGG AGAAAGCATC ACTGCCAATC AGCCCGAGCT
TCATCCCACC TCACCCGACA TCAGGGGGAT CGAGAGCTGG CACCCCCCAT TTCAGCACTA
CCCCTTC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CD27	CD27 antigen precursor [Homo sapiens].	306	1e-83	O
		CD40	tumor necrosis factor receptor superfamily member 5 isoform 1 precursor [Homo sapiens].	73.6	3e-13	O
		CD40	tumor necrosis factor receptor superfamily member 5 isoform 2 precursor [Homo sapiens].	73.6	3e-13	O
		FAS	tumor necrosis factor receptor superfamily member 6 isoform 2 precursor [Homo sapiens].	69.7	4e-12	O
		FAS	tumor necrosis factor receptor superfamily member 6 isoform 3 precursor [Homo sapiens].	69.7	4e-12	O
		FAS	tumor necrosis factor receptor superfamily member 6 isoform 1 precursor [Homo sapiens].	69.7	4e-12	O
		TNFRSF25	tumor necrosis factor receptor superfamily member 25 isoform 1 precursor [Homo sapiens].	53.9	2e-07	O
		TNFRSF25	tumor necrosis factor receptor superfamily member 25 isoform 12 precursor [Homo sapiens].	53.9	2e-07	O
		TNFRSF25	tumor necrosis factor receptor superfamily member 25 isoform 3 precursor [Homo sapiens].	53.9	2e-07	O
		TNFRSF25	tumor necrosis factor receptor superfamily member 25 isoform 2 precursor [Homo sapiens].	53.9	2e-07	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Cd27	CD27 antigen isoform a [Mus musculus].	254	9e-68	O
		Fas	tumor necrosis factor receptor superfamily member 6 isoform 1 precursor [Mus musculus].	76.3	3e-14	O
		Cd27	CD27 antigen isoform b [Mus musculus].	70.9	1e-12	O
		Cd40	tumor necrosis factor receptor superfamily member 5 isoform 4 [Mus musculus].	67.8	1e-11	O
		Cd40	tumor necrosis factor receptor superfamily member 5 isoform 2 [Mus musculus].	67.8	1e-11	O
		Cd40	tumor necrosis factor receptor superfamily member 5 isoform 5 [Mus musculus].	67.8	1e-11	O
		Cd40	tumor necrosis factor receptor superfamily member 5 isoform 1 [Mus musculus].	67.8	1e-11	O
		Tnfrsf4	tumor necrosis factor receptor superfamily member 4 precursor [Mus musculus].	64.7	1e-10	O
		Tnfrsf22	tumor necrosis factor receptor superfamily member 22 [Mus musculus].	54.7	1e-07	O
		Ltbr	tumor necrosis factor receptor superfamily member 3 precursor [Mus musculus].	54.7	1e-07	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC611674	PREDICTED: similar to Tumor necrosis factor receptor superfamily member 7 precursor (CD27L receptor) (T-cell activation antigen CD27) (T14) [Canis familiaris].	293	2e-79	O
		LOC489632	PREDICTED: similar to Tumor necrosis factor receptor superfamily member 25 precursor (WSL-1 protein) (Apoptosis-mediating receptor DR3) (Apoptosis-mediating receptor TRAMP) (Death domain receptor 3) (WSL protein) (Apoptosis inducing receptor AIR) (Apo-3) (Lym... [Canis familiaris].	62.8	5e-10	O
		CD40	tumor necrosis factor receptor superfamily member 5 precursor [Canis lupus familiaris].	61.2	1e-09	O
		LOC486469	PREDICTED: similar to Tumor necrosis factor receptor superfamily member 6 precursor (FASL receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) [Canis familiaris].	59.7	4e-09	O
		LOC479580	PREDICTED: similar to Tumor necrosis factor receptor superfamily member 14 precursor (Herpesvirus entry mediator A) (Tumor necrosis factor receptor-like 2) (TR2) [Canis familiaris].	58.9	7e-09	O
		LOC486728	PREDICTED: similar to lymphotoxin beta receptor isoform 2 [Canis familiaris].	53.5	3e-07	O
		LOC486728	PREDICTED: similar to lymphotoxin beta receptor isoform 1 [Canis familiaris].	53.5	3e-07	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		CD27	CD27 antigen [Bos taurus].	342	3e-94	O
		TNFRSF25	tumor necrosis factor receptor superfamily member 25 [Bos taurus].	67	2e-11	O
		CD40	tumor necrosis factor receptor superfamily member 5 precursor [Bos taurus].	66.6	3e-11	O
		FAS	tumor necrosis factor receptor superfamily member 6 precursor [Bos taurus].	66.2	4e-11	O
		LTBR	tumor necrosis factor receptor superfamily member 3 [Bos taurus].	53.9	2e-07	O
		TNFRSF4	tumor necrosis factor receptor superfamily member 4 [Bos taurus].	53.5	3e-07	O
		LOC100301324	PREDICTED: X-linked ectodysplasin receptor-like [Bos taurus].	50.8	2e-06	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100520023	PREDICTED: CD27 antigen-like [Sus scrofa].	434	e-122	O
		FAS	tumor necrosis factor receptor superfamily member 6 precursor [Sus scrofa].	80.5	1e-15	O
		LOC100516201	PREDICTED: tumor necrosis factor receptor superfamily member 25-like [Sus scrofa].	61.6	6e-10	O
		CD40	tumor necrosis factor receptor superfamily member 5 precursor [Sus scrofa].	60.8	1e-09	O
		LOC100520196	PREDICTED: tumor necrosis factor receptor superfamily member 3-like [Sus scrofa].	56.2	3e-08	O

Alignment:      TOP

20110601C-002497 : ...........................................................G
                   ---------+---------+---------+---------+---------+---------+ 1
PBL01_0060_G02.b : nnnggatacacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxG
SPL01_0053_C01.b :                            nnnnnggctcggaatatnacxxxxxxxxxxxxx
MLN01_0028_B05.b :                      nnncctcggcnnnggcttggacttgacagtttgtcxxxx


20110601C-002497 : GGGTGGGGGCAGTGGCAGTGACAGTGACTGCATGAGTGAGAAACAGCCACAGTAGCGCTT
                   ---------+---------+---------+---------+---------+---------+ 61
PBL01_0060_G02.b : GGGTGGGGGCAGTGGCAGTGACAGTGACTGCATGAGTGAGAAACAGCCACAGTAGCGCTT
SPL01_0053_C01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGTAGCGCTT
MLN01_0028_B05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGTAGCGCTT


20110601C-002497 : CAACGGCATCAGAGGTCGGCCTGCCACCTGAGGGGGGCAACTCCCAGAAGACCTGCCTGG
                   ---------+---------+---------+---------+---------+---------+ 121
PBL01_0060_G02.b : CAACGGCATCAGAGGTCGGCCTGCCACCTGAGGGGGGCAACTCCCAGAAGACCTGCCTGG
SPL01_0053_C01.b : CAACGGCATCAGAGGTCGGCCTGCCACCTGAGGGGGGCAACTCCCAGAAGACCTGCCTGG
MLN01_0028_B05.b : CAACGGCATCAGAGGTCGGCCTGCCACCTGAGGGGGGCAACTCCCAGAAGACCTGCCTGG


20110601C-002497 : GAGGTGCAAAGAAGAGACACCAGCACCCAGCTGGGGAGGTGCCAGCTCCCCCAAGGCCAC
                   ---------+---------+---------+---------+---------+---------+ 181
PBL01_0060_G02.b : GAGGTGCAAAGAAGAGACACCAGCGCCCAGCTGGGGAGGTGCCAGCTCCCCCAAGGCCAC
SPL01_0053_C01.b : GAGGTGCAAAGAAGAGACACCAGCACCCAGCTGGGGAGGTGCCAGCTCCCCCAAGGCCAC
MLN01_0028_B05.b : GAGGTGCAAAGAAGAGACACCAGCACCCAGCTGGGGAGGTGCCAGCTCCCCCAAGGCCAC


20110601C-002497 : AGCTGGGGCACAGGAAGAACTTCCTGGGCAGGGGCCATGGCCCGGTCACCTCTCTGCTGG
                   ---------+---------+---------+---------+---------+---------+ 241
PBL01_0060_G02.b : AGCTGGGGCACAGGAAGAACTTCCTGGGCAGGGGCCATGGCCCGGTCACCTCTCTGCTGG
SPL01_0053_C01.b : AGCTGGGGCACAGGAAGAACTTCCTGGGCAGGGGCCATGGCCCGGTCACCTCTCTGCTGG
MLN01_0028_B05.b : AGCTGGGGCACAGGAAGAACTTCCTGGGCAGGGGCCATGGCCCGGTCACCTCTCTGCTGG


20110601C-002497 : CTGTGGGTTCTGGGTACCCTGGCAGGGCTCTCCGCTACCCCAGCCCCCCAGAGCTGTCCA
                   ---------+---------+---------+---------+---------+---------+ 301
PBL01_0060_G02.b : CTGTGGGTTCTGGGTACCCTGGCAGGGCTCTCCGCTACCCCAGCCCCCCAGAGCTGTCCA
SPL01_0053_C01.b : CTGTGGGTTCTGGGTACCCTGGCAGGGCTCTCCGCTACCCCAGCCCCCCAGAGCTGTCCA
MLN01_0028_B05.b : CTGTGGGTTCTGGGTACCCTGGCAGGGCTCTCCGCTACCCCAGCCCCCCAGAGCTGTCCA


20110601C-002497 : GAGAAGCACTACTGGGCTCGGGGCGAACTGTGCTGCCAGATGTGCCAGCCAGGAACGTTC
                   ---------+---------+---------+---------+---------+---------+ 361
PBL01_0060_G02.b : GAGAAGCACTACTGGGCTCGGGGCGAACTGTGCTGCCAGATGTGCCAGCCAGGAACGTTC
SPL01_0053_C01.b : GAGAAGCACTACTGGGCTCGGGGCGAACTGTGCTGCCAGATGTGCCAGCCAGGAACGTTC
MLN01_0028_B05.b : GAGAAGCACTACTGGGCTCGGGGCGAACTGTGCTGCCAGATGTGCCAGCCAGGAACGTTC


20110601C-002497 : CTGGTGAAGGACTGTGACCAGCACGGAAAGGCTGCTCGCTGTGATCCGTGTAAACAGGGG
                   ---------+---------+---------+---------+---------+---------+ 421
PBL01_0060_G02.b : CTGGTGAAGGACTGTGACCAGCACGGAAAGGCTGCTCGCTGTGATCCGTGTAAACAGGGG
SPL01_0053_C01.b : CTGGTGAAGGACTGTGACCAGCACGGAAAGGCTGCTCGCTGTGATCCGTGTAAACAGGGG
MLN01_0028_B05.b : CTGGTGAAGGACTGTGACCAGCACGGAAAGGCTGCTCGCTGTGATCCGTGTAAACAGGGG


20110601C-002497 : GTGTCCTTCTCACCAGACTACCACAGCCGGCCCCACTGTGAGAGCTGCCGGCACTGTAAC
                   ---------+---------+---------+---------+---------+---------+ 481
PBL01_0060_G02.b : GTGTCCTTCTCACCAGACTACCACAGCCGGCCCCACTGTGAGAGCTGCCGGCACTGTAAC
SPL01_0053_C01.b : GTGTCCTTCTCACCAGACTACCACAGCCGGCCCCACTGTGAGAGCTGCCGGCACTGTAAC
MLN01_0028_B05.b : GTGTCCTTCTCACCAGACTACCACAGCCGGCCCCACTGTGAGAGCTGCCGGCACTGTAAC


20110601C-002497 : TCTGGTCTTTTCGTTCAAAACTGCACCCTCACTGCCAACGCCAAGTGTGCCTGCCCTGAG
                   ---------+---------+---------+---------+---------+---------+ 541
PBL01_0060_G02.b : TCTGGTCTTTTCGTTCAAAACTGCACCCTCACTGCCAACGCCAAGTGTGCCTGCCCTGAG
SPL01_0053_C01.b : TCTGGTCTTTTCGTTCAAAACTGCACCCTCACTGCCAACGCCAAGTGTGCCTGCCCTGAG
MLN01_0028_B05.b : TCTGGTCTTTTCGTTCAAAACTGCACCCTCACTGCCAACGCCAAGTGTGCCTGCCCTGAG


20110601C-002497 : GGCTGGCAGTGCAGGGACAAGGAGTGTACAGAGTGTGATGGTCCAGCCCAGACCCCAGGC
                   ---------+---------+---------+---------+---------+---------+ 601
PBL01_0060_G02.b : GGCTGGCAGTGCAGGGACAAGGAGTGTACAGAGTGTGATGGTCCAGCCCAGACCCCAGGC
SPL01_0053_C01.b : GGCTGGCAGTGCAGGGACAAGGAGTGTACAGAGTGTGATGGTCCAGCCCAGACCCCAGGC
MLN01_0028_B05.b : GGCTGGCAGTGCAGGGACAAGGAGTGTACAGAGTGTGATGGTCCAGCCCAGACCCCAGGC


20110601C-002497 : CCACACCCACAACCCTCCCACTCACCTTATGCTGAAGCAATACCAGAGGCCAGGACCAGC
                   ---------+---------+---------+---------+---------+---------+ 661
PBL01_0060_G02.b : CCACACCCACAACCCTCCCACTCACCTTATGCTGAAGCAATACCAGAGGCCAGGACCAGC
SPL01_0053_C01.b : CCACACCCACAACCCTCCCACTCACCTTATGCTGAAGCAATACCAGAGGCCAGGACCAGC
MLN01_0028_B05.b : CCACACCCACAACCCTCCCACTCACCTTATGCTGAAGCAATACCAGAGGCCAGGACCAGC


20110601C-002497 : CGGTACACTCAGACTCTGGCTGACGTCGGGCAGGTTCCTGTCCCAACTATCTCCACCTAC
                   ---------+---------+---------+---------+---------+---------+ 721
PBL01_0060_G02.b : CGGTACACTCAGACTCTGGCTGACGTCGGGCAGGTTCCTGTCCCAACTATCTCCACCTAC
SPL01_0053_C01.b : CGGTACACTCAGACTCTGGCTGACGTCGGGCAGGTTCCTGTCCCAACTATCTCCACCTAC
MLN01_0028_B05.b : CGGTACACTCAGACTCTGGCTGACGTCGGGCAGGTTCCTGTCCCAACTATCTCCACCTAC


20110601C-002497 : TTGTCTTACACCGGAGAATGTCCAGTGGCGCCAGCGGAGCCTTGTCCTTACAGCTACCCC
                   ---------+---------+---------+---------+---------+---------+ 781
PBL01_0060_G02.b : TTGTCTTACACCGGAGAATGTCCAGTGGCGCCAGCGGAGCCTTGTCCTTACAGCTACCCC
SPL01_0053_C01.b : TTGTCTTACACCGGAGAATGTCCAGTGGCGCCCGCGGAGCCTTGTCCTTACAGCTACCCC
MLN01_0028_B05.b : TTGTCTTACACCGGAGAATGTCCAGTGGCGCCAGCGGAGCCTTGTCCTTACAGCTACCCC


20110601C-002497 : AGGGAG*GAGGAGGGCAGCGCCATCCCCATTCAGGAAGATTACCGAAAC*CAGAGCTCGC
                   ---------+---------+---------+---------+---------+---------+ 839
PBL01_0060_G02.b : AGGGAG*GAGGAGGGCAGCGCCATCCCCATTCANGAAGATTACCGAAAC*CAGAGCTCGC
SPL01_0053_C01.b : AGGGAGGGAGGAGGGCAGCGCCATCCCCATTCCGGAAGATACCCGAAAC*CAGAGCTCGC
MLN01_0028_B05.b : AGGGAG*GAGGAGGGCAGCGCCATCCCCATTCAGGAAGATTACCGAANNACAGAGCTCGC


20110601C-002497 : TTCCTACCTCTGAGCCAGCGCTCCGCGGAGGAGAAAGCATCACTGCCAATCAGCCCGA*G
                   ---------+---------+---------+---------+---------+---------+ 898
PBL01_0060_G02.b : TTCCTA*CTCTGAGCCAGCGCTCCGCGGAGGAGAA*GCATCACTGCCATNCAGCCCGA*G
SPL01_0053_C01.b : TTCCTACctctgaaccagcgctccgcggaagaaaaaccatcactgccatcaagcccgaag
MLN01_0028_B05.b : TTCCTACCTCTGAGCCAGCGCTCCGCGAAGGAGAAAGCATCACTGNCCATCAGCCCGAAG


20110601C-002497 : CTTCATCCCACCTCACCCGACATC*AGGGGGATCGAGAGCTGGCACCCCCCATTTCAGCA
                   ---------+---------+---------+---------+---------+---------+ 957
PBL01_0060_G02.b : CTTCATCCCAC*TCACCCGACATC*AGGGGGATCGAGAGCTGGCAC*CCCCATTTCAGCA
SPL01_0053_C01.b : cttccatcccacctcaaccgacttccagggggatcaaaagctggcaccccaatttcagca
MLN01_0028_B05.b : CTTCATCCCACCTCACCNGACATCCAGGGGGATCGAGAGCTGGCACCCCCCATTTCAGCA


20110601C-002497 : CTACCCCTTC..................................................
                   ---------+---------+---------+---------+---------+---------+ 967
PBL01_0060_G02.b : CTACCCCTTCtcagaccntttccgtgtgcagactgggaaactggccatgtgccttttcgg
SPL01_0053_C01.b : ctaacccctcctcagaacctttccccgtgtgcaactttggaaactgggccaagtgccttt
MLN01_0028_B05.b : CTACCCCTTCatcagaacccnttttccgtgtgcagacttggggaactggncnatgtgcct


20110601C-002497 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 967
PBL01_0060_G02.b : actggtgtgtcaggaccagggaccagtggagggtgggaancagacccggtgtgtcccggc
SPL01_0053_C01.b : ttcggaactggtgtgtcaaggacacagggaacaagttggaagggtgggggaaacaaaacc
MLN01_0028_B05.b : tttcgggactggtgtgtcnaggacccagggaacaagtggaaggtggggaagcaagagccc


20110601C-002497 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 967
PBL01_0060_G02.b : atcagctgcacctgggctcaaaggctgggctcagtggaaacaacctggctacgaancagc
SPL01_0053_C01.b : ccggttgtgtcccgcccttct                                      
MLN01_0028_B05.b : gggtgtgtccgncatcagcttgcacctgtgctgcagaggctgggctccaggggaaaacca


20110601C-002497 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 967
PBL01_0060_G02.b : gccttacctgacttaacccaaataatacaacggaaaaaaaaaaaggcctgggccaactag
SPL01_0053_C01.b :                                                             
MLN01_0028_B05.b : cctttcctacagaagccagccgctataccctgactaaaaacgcaataagggacgaacgca


20110601C-002497 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 967
PBL01_0060_G02.b : gcggccctcaaatcccagggccacttccacccttttgtagggcccaagagcataaacgcg
SPL01_0053_C01.b :                                                             
MLN01_0028_B05.b : aaaaaaaaaaaaaagccccttgcctaactccggccggcccctaaaatccccagggggcaa


20110601C-002497 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 967
PBL01_0060_G02.b : ggcccttttaccctggaacctcttgttttaaacctctgggaaggacccccaataccggaa
SPL01_0053_C01.b :                                                             
MLN01_0028_B05.b : ttatcaacccttttttgtaaggccccaaagggcaataaaaagccggccgcctttaccccg


20110601C-002497 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 967
PBL01_0060_G02.b : attttggtgtccc                                              
SPL01_0053_C01.b :                                                             
MLN01_0028_B05.b : tggaaaagtccttgactttttaaat