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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-002856

Length: 891

Sequence:  [FASTA format sequence]
GTTTTGCTTT CTTGGCTGGA ACTGGGGAAG TGGGGCAACC CCGCGCGGGG CGACACCGGG
TTCCGGACCG ACTGCACGGG CGGGGCTGGA CTTGGTTTTG TTTGTTTGTT TTTTCAAGTG
ACCTGAAAAA AAAAAAAATG TCTGGATTTC TAGAAGGCTT GAGATGCTCA GAATGCATTG
ATTGGGGAGA AAAGCGAAAT ACTATCGCTT CCATTGCCGC CGGTGTTCTA TTTTTTACCG
GCTGGTGGAT TATCATAGAT GCCGCTGTCA TTTATCCCAG CATGGAAGAG TTCAACCACT
CCTACCACGC CTGTGGTGTT ATAGCAACCA TAGCCTTCCT AATGATTAAT GCAGTATCGA
ATGGACAAGT CCGAGGTGAT AGCTACAGTG AAGGTTGCCT GGGTCAAACA GGCGCTCGCA
TTTGGCTGTT CATTGGCTTC ATGTTGGCCT TTGGCTCTCT GATTGCATCA ATGTGGATTC
TCTTTGGAGG GTACGTTGCT AAAGAAAAAA CCACAGTATA CCCTGGAATT GCTGTATTTT
TCCAAAATGC CTTCATCTTT TTTGGAGGAC TGGTTTTTAA GTTTGGCCGC ACCGAAGACT
TATGGCAATG AAAACAGCTG ATTGATTACT GCACAGCAGC CCTGCATGGG TATTTTTTAC
TACTCACTCC CAGTCTTTTG TAATGCCATT TTCTAAACTT ATTTCTGAGT GTAGTCTCAA
CTTAAATTTG TATAATACAA AATCATGAGA ACTTCCTATT TAAACAACAA ATTCTATTGT
ATGCATTTGA TGAACTTGTA AAAATGCTAA AGAAAAATAC TTCACATGAG AAATTTTATT
ACGTTTTATC ATGGTATAAT TTGTCAAAAT AAAAAATAAT CACGAAAGAA A

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TMEM50A	transmembrane protein 50A [Homo sapiens].	319	2e-87	O
		TMEM50B	transmembrane protein 50B [Homo sapiens].	245	4e-65	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tmem50a	transmembrane protein 50A [Mus musculus].	313	1e-85	O
		Tmem50b	transmembrane protein 50B [Mus musculus].	244	5e-65	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC478181	PREDICTED: similar to Transmembrane protein 50A (Small membrane protein 1) [Canis familiaris].	322	3e-88	O
		LOC478405	PREDICTED: similar to Transmembrane protein 50B (HCV p7-transregulated protein 3) [Canis familiaris].	245	5e-65	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		TMEM50A	transmembrane protein 50A [Bos taurus].	320	1e-87	O
		TMEM50B	transmembrane protein 50B [Bos taurus].	245	4e-65	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		TMEM50A	transmembrane protein 50A [Sus scrofa].	328	3e-90	O

Alignment:      TOP

20110601C-002856 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
MLN01_0081_E02.b : nnggctagtgacttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SMG01_0080_F01.b :               nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnxxxx
OVRM1_0032_H03.b :                     cxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0019_C10.b :                                    nnnggatgaacaxxxxxxxxxxxxx


20110601C-002856 : ..................GTTTTGCTTTCTTGGCTGGAACTGGGGAAGTGGGGCAACCCC
                   ---------+---------+---------+---------+---------+---------+ 42
MLN01_0081_E02.b : xxxxxxxxxxxxxxxxxxGTTTTGCTTTCTTGGCTGGAACTGGGGAAGTGGGGCAACCCC
SMG01_0080_F01.b : xxxxxxxxxxxxxxxxxxxTTTTGCTTTCTTGGCTGGAATTGGGGAAGTGGGGCAACCCC
OVRM1_0032_H03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxtctTGGCTGGAACTGGGGAAGTGGGGCAACCCC
ITT01_0019_C10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGCTGGAACTGGGGAAGTGGGGCAACCCC


20110601C-002856 : GCGCGGGGCGACACC*GGGTTCCGGACCGACTGCACGGGCGGGGCTGGACTTGGTTTTGT
                   ---------+---------+---------+---------+---------+---------+ 101
MLN01_0081_E02.b : GCGCGGGGCGACACC*GGGTTCCGGACCGACTGCACGGGCGGGGCTGGACTTGGTTTTGT
SMG01_0080_F01.b : GCGCGGGGCGACACCTGGGTTCCGGACCGACTGCACGGGCGGGGCTGGACTTGGTTTTGT
OVRM1_0032_H03.b : GCGCGGGGCGACACC*GGGTTCCGGACCGACTGCGCGGGCGGGGCTGGACTTGGTTTTGT
ITT01_0019_C10.b : GCGCGGGGCGACACC*GGGTTCCGGACCGACTGCACGGGCGGGGCTGGACTTGGTTTTGT


20110601C-002856 : TTGTTTGTTTTTTCAAGTGACCTGAAAAAAAAAAAAA*TGTCTGGATTTCTAGAAGG*CT
                   ---------+---------+---------+---------+---------+---------+ 159
MLN01_0081_E02.b : TTGTTTGTTTTTTCAAGTGACCTGAAAAAAAAAAAAA*TGTCTGGATTTCTAGAAGG*CT
SMG01_0080_F01.b : TTGTTTGTTTTTTCAAGTGACCTGAAAAAAAAAAAAAATGTCTGGATTTCTAGAAGG*CT
OVRM1_0032_H03.b : TTGTTTGTTTTTTCAAGTGACCTGAAAAAAAAAAAAATGTNCTGGATTTCTAGAAGGGCT
ITT01_0019_C10.b : TTGTTTGTTTTTTCAAGTGACCTGAAAAAAAAAAAAA*TGTCTGGATTTCTAGAAGG*CT


20110601C-002856 : TGAGATGCTCAGAATGCATTGATTG*GGGAGAAAAGCGAAATACTATCGCTTCCATTGCC
                   ---------+---------+---------+---------+---------+---------+ 218
MLN01_0081_E02.b : TGAGATGCTCAGAATGCATTGATTG*GGGAGAAAAGCGAAATACTATCGCTTCCATTGCC
SMG01_0080_F01.b : TGAGATGCTCAGAATGCATTGATTG*GGGAGAAAAGCGAAATACTATCGCTTCCATTGCC
OVRM1_0032_H03.b : TGAGATGCTCAGAATGCAATGATTGNGGGAGAAAAGCGAAATACTATCGCTTCCATTGCC
ITT01_0019_C10.b : TGAGATGCTCAGAATGCATTGATTG*GGGAGAAAAGCGAAATACTATCGCTTCCATTGCC


20110601C-002856 : GCCGGTGTTCTATTTTTTACCGGCTGGTGGATTATCATAGATGCCGCTGTCATTTATCCC
                   ---------+---------+---------+---------+---------+---------+ 278
MLN01_0081_E02.b : GCCGGTGTTCTATTTTTTACCGGCTGGTGGATTATCATAGATGCCGCTGTCATTTATCCC
SMG01_0080_F01.b : GCCGGTGTTCTATTTTTTACCGGCTGGTGGATTATCATAGATGCCGCTGTCATTTATCCC
OVRM1_0032_H03.b : GCCGGTGTTCTATTTTTTACCGGCTGGTGGATTATCATAGATGCCGCTGTCATTTATCCC
ITT01_0019_C10.b : GCCGGTGTTCTATTTTTTACCGGCTGGTGGATTATCATAGATGCCGCTGTCATTTATCCC


20110601C-002856 : AGCATGGAAGAGTTCAACCACTCCTACCACGCCTGTGGTGTTATAGCAACCATAGCCTTC
                   ---------+---------+---------+---------+---------+---------+ 338
MLN01_0081_E02.b : AGCATGGAAGAGTTCAACCACTCCTACCACGCCTGTGGTGTTATAGCAACCATAGCCTTC
SMG01_0080_F01.b : AGCATGGAAGAGTTCAACCACTCCTACCACGCCTGTGGTGTTATAGCAACCATAGCCTTC
OVRM1_0032_H03.b : AGCATGGAAGAGTTCAACCACTCCTACCACGCCTGTGGTGTTATAGCAACCATAGCCTTC
ITT01_0019_C10.b : AGCATGGAAGAGTTCAACCACTCCTACCACGCCTGTGGTGTTATAGCAACCATAGCCTTC


20110601C-002856 : CTAATGATTAATGCAGTATCGAATGGACAAGTCCGAGGTGATAGCTACAGTGAAGGTTGC
                   ---------+---------+---------+---------+---------+---------+ 398
MLN01_0081_E02.b : CTAATGATTAATGCAGTATCGAATGGACAAGTCCGAGGTGATAGCTACAGTGAAGGTTGC
SMG01_0080_F01.b : CTAATGATTAATGCAGTATCGAATGGACAAGTCCGAGGTGATAGCTACAGTGAAGGTTGC
OVRM1_0032_H03.b : CTAATGATTAATGCAGTATCGAATGGACAAGTCCGAGGTGATAGCTACAGTGAAGGTTGC
ITT01_0019_C10.b : CTAATGATTAATGCAGTATCGAATGGACAAGTCCGAGGTGATAGCTACAGTGAAGGTTGC


20110601C-002856 : CTGGGTCAAACAGGCGCTCGCATTTGGCTGTTCATTGGCTTCATGTTGGCCTTTGGCTCT
                   ---------+---------+---------+---------+---------+---------+ 458
MLN01_0081_E02.b : CTGGGTCAAACAGGTGCTCGCATTTGGCTGTTCATTGGCTTCATGTTGGCCTTTGGCTCT
SMG01_0080_F01.b : CTGGGTCAAACAGGCGCTCGCATTTGGCTGTTCATTGGCTTCATGTTGGCCTTTGGCTCT
OVRM1_0032_H03.b : CTGGGTCAAACAGGCGCTCGCATTTGGCTGTTCATTGGCTTCATGTTGGCCTTTGGCTCT
ITT01_0019_C10.b : CTGGGTCAAACAGGCGCTCGCATTTGGCTGTTCATTGGCTTCATGTTGGCCTTTGGCTCT


20110601C-002856 : CTGATTGCATCAATGTGGATTCTCTTTGGAGGGTACGTTGCTAAAGAAAAAACCACAGTA
                   ---------+---------+---------+---------+---------+---------+ 518
MLN01_0081_E02.b : CTGATTGCATCAATGTGGATTCTCTTTGGAGGGTACGTTGCTAAAGAAAAAACCACAGTA
SMG01_0080_F01.b : CTGATTGCATCAATGTGGATTCTCTTTGGAGGGTACGTTGCTAAAGAAAAAACCACAGTG
OVRM1_0032_H03.b : CTGATTGCATCAATGTGGATTCTCTTTGGAGGGTACGTTGCTAAAGAAAAAACCACAGTA
ITT01_0019_C10.b : CTGATTGCATCAATGTGGATTCTCTTTGGAGGGTACGTTGCTAAAGAAAAAACCACAGTG


20110601C-002856 : TACCCTGGAATTGCTGTATTTTTCCAAAATGCCTTCATCTTTTTTGGAGGACTGGTTTTT
                   ---------+---------+---------+---------+---------+---------+ 578
MLN01_0081_E02.b : TACCCTGGAATTGCTGTATTTTTCCAAAATGCCTTCATCTTTTTTGGAGGACTGGTTTTT
SMG01_0080_F01.b : TACCCTGAAATTGCTGTATTTTTCCAAAATGCCTTCATCTTTTTTGGAGGACTGGTTTTT
OVRM1_0032_H03.b : TACCCTGGAATTGCTGTATTTTTCCAAAATGCCTTCATCTTTTTTGGAGGACTGGTTTTT
ITT01_0019_C10.b : TACCCTGGAATTGCTGTATTTTTCCAAAATGCCTTCATCTTTTTTGGAGGACTGGTTTTT


20110601C-002856 : AAGTTTGGCCGCACCGAAGACTTATGGCAATGAAAACAGCTGATTGATTACTGCACAGCA
                   ---------+---------+---------+---------+---------+---------+ 638
MLN01_0081_E02.b : AAGTTTGGCCGCACCGAAGACTTATGGCAATGAAAACAGCTGATTGATTACTGCACAGCA
SMG01_0080_F01.b : AAGTTTGGCCGCACCGAAGACTTATGGCAATGAAAACAGCTGATTGATTACTGCACAGCA
OVRM1_0032_H03.b : AAGTTTGGCCGCACCGAAGACTTATGGCAATGAAAACAGCTGATTGATTACTGCACAGCA
ITT01_0019_C10.b : AAGTTTGGCCGCACCGAAGACTTATGGCAATGAAAACAGCTGATTGATTACTGCACAGCA


20110601C-002856 : GCCCTGCATGGGTATTTTTTACTACTCACTCCCAGTCTTTTGTAATGCCATTTTCTAAAC
                   ---------+---------+---------+---------+---------+---------+ 698
MLN01_0081_E02.b : GCCCTGCATGGGTATTTTTTACTACTCACTCCCAGTCTTTTGTAATGCCATTTTCTAAAC
SMG01_0080_F01.b : GCCCTGCATGGGTATTTTTTACTACTCACTCCCAGTCTTTTGTAATGCCATTTTCTAAAC
OVRM1_0032_H03.b : GCCCTGCATGGGTATTTTTTACTACTCACTCCCAGTCTTTTGTAATGCCATTTTCTAAAC
ITT01_0019_C10.b : GCCCTGCATGGGTATTTTTTACTACTCACTCCCAGTCTTTTGTAATGCCATTTTCTAAAC


20110601C-002856 : TTATTTCTGAGTGTAGTCTCAACTTAAATTTGTATAATACAAAATCATGAGAACTTCCTA
                   ---------+---------+---------+---------+---------+---------+ 758
MLN01_0081_E02.b : TTATTTCTGAGTGTAGTCTCAACTTAAATTTGTATAATACAAAATCATGAGAACTTCCTA
SMG01_0080_F01.b : TTATTTCTGAGTGAAGTCTCActtaaatttgtaaaaacaaaatcatgagaacttctattt
OVRM1_0032_H03.b : TTATTTCTGAGTGTAGTCTCAACTTAAATTTGTATAATACAAGATCATGAGAACTTTCTA
ITT01_0019_C10.b : TTATTTCTGAGTGTAGTCTCAACTTAAATTTGTATAATACAAAATCATGAGAACTTCCTA


20110601C-002856 : TTTAAACAACAAATTCTATTGTATGCATTTGATGAACTTGTAAAAATGCTAAAGAAAAAT
                   ---------+---------+---------+---------+---------+---------+ 818
MLN01_0081_E02.b : TTTAAACAACAAATTCTATTGTATGCATTTGATGAACTTGTAAAAATGCTAAAGAAAAAT
SMG01_0080_F01.b : taacacaaaatccatggtagcttttgagaaactggaaaaatgctaaagaaaatactttcc
OVRM1_0032_H03.b : TTTAAAC*ACAAATTCTATTGGATGCATTTGA                           
ITT01_0019_C10.b : TTTAAACAACAAATTCTATTGTATGCATTTGATGAACTTGTAAAA*TGCTAAAGAAAAAT


20110601C-002856 : ACTTCACATGAGAAATTTT*ATTACGTTTTATCATGGTATAATTTGTCAAAATAAAAAAT
                   ---------+---------+---------+---------+---------+---------+ 877
MLN01_0081_E02.b : ACTTCCCATGAGAAATTTTTAATACGTTTTATCATGGTATAATTTGTCaaaataaaaata
SMG01_0080_F01.b : atgaaaattttaataagttttatcaggaaaatttgcccaaaaaaataaatccgaaaaaaa
OVRM1_0032_H03.b :                                                             
ITT01_0019_C10.b : ACTTCACATGAGAAATTTT*ATTACGTTTTATCATGGTATAATTTGTCAAAANTAAAAAT


20110601C-002856 : AATCACGAAAGAAA..............................................
                   ---------+---------+---------+---------+---------+---------+ 891
MLN01_0081_E02.b : aatcacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
SMG01_0080_F01.b : tttgggaacccctttatgaaattttgccgggcaagggccaaagaattaaaaattccgaaa
OVRM1_0032_H03.b :                                                             
ITT01_0019_C10.b : AATCACGAAAGAAAaaaaaaaaaaaa                                 


20110601C-002856 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 891
MLN01_0081_E02.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
SMG01_0080_F01.b : aattaaggggttattaaagggccccttgtggtaagggaaaagaaaaaaaattcgggtttt
OVRM1_0032_H03.b :                                                             
ITT01_0019_C10.b :                                                             


20110601C-002856 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 891
MLN01_0081_E02.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
SMG01_0080_F01.b : aaccctcnnnnaannnaaaaaaaaaanaaaaaanaaaaannggggccattgttccaattg
OVRM1_0032_H03.b :                                                             
ITT01_0019_C10.b :                                                             


20110601C-002856 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 891
MLN01_0081_E02.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
SMG01_0080_F01.b : atggcgcgcccttaaaacccgggggggacaataaaaacccccttttttaaaaggcgcccc
OVRM1_0032_H03.b :                                                             
ITT01_0019_C10.b :                                                             


20110601C-002856 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 891
MLN01_0081_E02.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
SMG01_0080_F01.b : gggggaaatataaaagggggcgcctttttttaccctgggaaaaaccttcttgttttttaa
OVRM1_0032_H03.b :                                                             
ITT01_0019_C10.b :                                                             


20110601C-002856 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 891
MLN01_0081_E02.b : nnnnnnnnnnnnnnnnnnnn                                       
SMG01_0080_F01.b : aaaacctttgtgggaaatgtaaaaacccacaaaaaagcggggaaaaattttttgtgggtg
OVRM1_0032_H03.b :                                                             
ITT01_0019_C10.b :                                                             


20110601C-002856 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 891
MLN01_0081_E02.b :                                                             
SMG01_0080_F01.b : cccct                                                      
OVRM1_0032_H03.b :                                                             
ITT01_0019_C10.b :