[Help]

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-003021

Length: 1,737

Sequence:  [FASTA format sequence]
ATTCCCGCCC TCCGCCACCA TCTTGCTCTC CTGTAAGGCG GTTGTGACCG CGGGTCCGAG
CAATCTTAAG CCATGAAGCT TATAACCAGA GCCGGATCCT TCTCGAGATT TTATTCTCTC
AAAGTTGCCC CCAAAGCTTT GGCCAGCGCT GCCCCTGCAG GAGTGCCTCT ACAGCCTCAG
GACCTTGAGT TTACCAGATT ACCAAATGGT TTGGTGATCG CATCTCTCGA AAACTATGCT
CCTGCATCAA GAATTGGTTT GTTCATTAAA GCAGGCAGTA GATATGAGGA CTCCAACAAT
TTAGGAACCT CTCATCTGCT TCGTCTTGCA TCCAGTTTGA CTACAAAAGG AGCTTCATCT
TTCAAGATAA CCCGTGGAAT CGAAGCAGTT GGTGGTAAAT TAAGTGTGAC TTCCACAAGG
GAAAGCATGG CTTACACAGT GGAATGTCTG CGAGATGATA TTGAGATCCT GATGGAGTTC
CTGCTCAATG TCACCGCAGC ACCAGAATTT CGTCGCTGGG AGGTAGCTGC CCTGCAGTCT
CAGCTAAGGA TTGATAAAGC TGTGGCTTTT CAGAATCCAC AGGCTCAGGT CCTTGAAAAT
TTGCATGCTG CAGCTTACCG AAATGCCTTG GCTAATTCCT TGTACTGTCC TGATTATAGG
ATTGGAAAAG TGACACCAGA TCAGTTACAT TACTATGTAC AGAACCATTT CACAAGTGCA
AGAATGGCTT TGATTGGACT TGGTGTGAGT CATCCTGTTC TAAAGCAAGT GGCCGAACGG
TTTCTCAACA TGAGGGGGGG GCTTGGTTTA TCTGGCGCAA AGGCCAAGTA CCGTGGAGGT
GAAATTCGAG ACCAGAATGG AGACAGTCTC GTCCATGCTG CTCTTGTAGC AGAAAGTGCT
GCCACGGGAA GTGCAGAAGC AAATGCATTT AGTGTTCTGC AGCATGTCCT TGGTGCTGGA
CCACATGTTA AGAGGGGCAG CAATGCCACC AGCTCTCTAT ACCAGGCTGT CGCCAAGGGA
GTTCACCAGC CATTTGATGT TTCTGCTTTT AACGCCAGTT ACTCAGATTC TGGACTCTTT
GGGATTTATA CTATCTCTCA GGCTGCATCT GCTGGAGATG TTATCAAGTC TGCCTATGAC
CAAGTAAAAA CAATTGCTCA AGGAAACCTT TCTAATACAG ATGTCCAAGC TGCCAAGAAC
AAGCTGAAAG CCGGGTACCT AATGTCAGTG GAGTCTTCTG AGGGTTTCCT GGATGAAGTT
GGGTCCCAGG CTCTAGTTGC TGGTTCGTAC GTGCAGCCAT CCACGGTCCT TCAGCAGATT
GATTCAGTAG CTGACGCTGA TGTTATAAAC GCTGCAAAGA AGTTTGTTTC TGGCCGGAAG
TCAATGGCAG CAAGCGGAAA TTTGGGTCAT ACACCTTTCG TTGATGAGTT GTAATATTGA
AACATGTTGC AGGAAAGAGC TGAACATTTT CTCAACCCTG AGCAGCAAAT ACGTGAAGGT
GAAAAGCCTC TAATGTAACA TTTATCTTTT TTTCCAATGA GATTAAATAT CGTAAAGCAT
AAATGCAAGT AACTGTTCCC AGATGGCCTA AAGTCAATAA AACATTATAT TTAAATGTTT
TTCTTAGAGT TCCCTGTCAC TGGTGTGGCT CTGGTTACCA CTGTGGCAAG GGTTCGATCC
ATGGCCCCGG GAACTTCCAT GTGCTGCAGG CATAGCCCAA TTAAATAAAT AATAAAT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		UQCRC2	cytochrome b-c1 complex subunit 2, mitochondrial precursor [Homo sapiens].	753	0.0	O
		PMPCA	mitochondrial-processing peptidase subunit alpha precursor [Homo sapiens].	147	3e-35
		PMPCB	mitochondrial-processing peptidase subunit beta precursor [Homo sapiens].	129	9e-30	O
		UQCRC1	cytochrome b-c1 complex subunit 1, mitochondrial precursor [Homo sapiens].	100	3e-21	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Uqcrc2	cytochrome b-c1 complex subunit 2, mitochondrial precursor [Mus musculus].	734	0.0	O
		Pmpca	mitochondrial-processing peptidase subunit alpha precursor [Mus musculus].	145	7e-35
		Pmpcb	mitochondrial-processing peptidase subunit beta precursor [Mus musculus].	134	2e-31	O
		Uqcrc1	cytochrome b-c1 complex subunit 1, mitochondrial precursor [Mus musculus].	113	4e-25	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC479815	PREDICTED: similar to Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) isoform 1 [Canis familiaris].	777	0.0	O
		LOC612669	PREDICTED: similar to Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) [Canis familiaris].	402	e-112	O
		LOC479815	PREDICTED: similar to Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) isoform 3 [Canis familiaris].	213	3e-65	O
		LOC611379	PREDICTED: similar to Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (Complex III subunit II) [Canis familiaris].	184	2e-46	O
		LOC480677	PREDICTED: similar to mitochondrial matrix processing protease, alpha subunit [Canis familiaris].	149	8e-36
		LOC475897	PREDICTED: similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP) (P-52) [Canis familiaris].	137	3e-32
		LOC608455	PREDICTED: similar to ubiquinol-cytochrome c reductase core protein I isoform 2 [Canis familiaris].	108	1e-23	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		UQCRC2	cytochrome b-c1 complex subunit 2, mitochondrial precursor [Bos taurus].	782	0.0	O
		LOC790868	PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Bos taurus].	777	0.0	O
		LOC613316	PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Bos taurus].	777	0.0	O
		LOC613316	PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Bos taurus].	777	0.0	O
		LOC783502	PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Bos taurus].	775	0.0	O
		LOC783502	PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Bos taurus].	775	0.0	O
		PMPCA	mitochondrial-processing peptidase subunit alpha precursor [Bos taurus].	150	3e-36
		PMPCB	mitochondrial-processing peptidase subunit beta precursor [Bos taurus].	134	3e-31	O
		PMPCB	PREDICTED: mitochondrial-processing peptidase subunit beta-like [Bos taurus].	132	7e-31	O
		UQCRC1	cytochrome b-c1 complex subunit 1, mitochondrial precursor [Bos taurus].	109	9e-24	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100524613	PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Sus scrofa].	828	0.0	O
		LOC100620271	PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like [Sus scrofa].	135	5e-32	O
		LOC100624058	PREDICTED: mitochondrial-processing peptidase subunit beta-like [Sus scrofa].	133	4e-31
		PMPCB	PREDICTED: mitochondrial-processing peptidase subunit beta [Sus scrofa].	133	4e-31	O
		LOC100156879	PREDICTED: cytochrome b-c1 complex subunit 1, mitochondrial [Sus scrofa].	115	6e-26	O
		LOC100627838	PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Sus scrofa].	78.2	1e-14	O