[Help]

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-003100

Length: 798

Sequence:  [FASTA format sequence]
CTCTCCGCCC AAATCCCAGG CAAATGACTT CCCTGTGCCT TCGCCTAATG CTCGGCTACC
ATTTCCTTCC GTCTCGGCCT CGCTTGGTGT TTAACCGCGC GCGCACCACA AGGCCGGGGG
CTGAGGCGGC CGGGCTCTCC GGGCCAGCCT CTCCCCTGGA CCCCGCCCCG CCGGGAGTTC
TGCAGCTCCC GCTGTCCAGC ACCCGCAGTC TCAGCCGAGG TTGCCGCGGC GCCAAGACAC
AAGTCATCTC CCCCAGCAAG CGGGCCCGGC CTGCGGAGGA AAGCCGCAAG CGACTCCGCT
TTGCCCGGCT CTCAGAGCAC GCCACTGCCC CAACCAAAGG GTCTGAGCGC GCCGCGGGAT
ATGACCTGTA TAGTGCCTAC GATTACACAG TACTGCCGAT GGAGAAAGCC ATTGTGAAAA
CCGACATTCA GATAGCTCTT CCTTCTGGGT GCTATGGGCG AGTAGCTCCA CGTTCTGGCT
TGGCTGCAAA ACACTTCATA GATGTAGGAG CTGGTGTCAT AGATGAAGAT TATAGAGGAA
ATGTTGGTGT TGTACTATTT AATTTTGGCA AAGAAAAGTT TGAAGTCAAA AAGGGTGATC
GAATCGCACA GCTCATTTGT GAACGGATTT TTTACCCAGA AATAGAGGAA GTTCAAGTTT
TGGATGACAC CGAAAGGGGT TCAGGAGGTT TTGGTTCCAC TGGAACGAAT TAAAATTTAC
GCCAAGAACA GAAAATGAGA AAATGTACTT TTTCCTTTAA AATAAAAACT TTGCTTCAAA
AAAAAAAAAA AAAAAAAA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		DUT	deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform 1 precursor [Homo sapiens].	315	3e-86	O
		DUT	deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform 2 [Homo sapiens].	271	6e-73	O
		DUT	deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform 3 [Homo sapiens].	250	1e-66	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Dut	deoxyuridine triphosphatase isoform 1 [Mus musculus].	250	8e-67	O
		Dut	deoxyuridine triphosphatase isoform 2 [Mus musculus].	246	2e-65	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC609526	PREDICTED: similar to Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial precursor (dUTPase) (dUTP pyrophosphatase) [Canis familiaris].	293	1e-79	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		DUT	deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial [Bos taurus].	271	6e-73	O
		LOC100336906	PREDICTED: deoxyuridine triphosphatase-like [Bos taurus].	248	4e-66	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100621123	PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like isoform 1 [Sus scrofa].	428	e-120	O
		LOC100621123	PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like isoform 2 [Sus scrofa].	294	4e-80	O

Alignment:      TOP

20110601C-003100 : .........................................................CTC
                   ---------+---------+---------+---------+---------+---------+ 3
ITT01_0055_G09.b : nnngggtgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTC
ADR01_0099_A04.b :                         cccccnggatgaacaxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_A08.b :                        gagctxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0037_E12.b :                                                             


20110601C-003100 : TCCGCCCAAATCCCAGGCAAATGACTTCCCTGTGCCTTCGCCTAATGCTCGGCTACCATT
                   ---------+---------+---------+---------+---------+---------+ 63
ITT01_0055_G09.b : TCCGCCCAAATCCCAGGCAAATGACTTCCCTGTGCCTTCGCCTAATGCTCGGCTACCATT
ADR01_0099_A04.b : xxxxxxxxxxxxxxxxxxxxxxgacttcCCTGTGCCTTCGCCCAATGCTCGGCTACCATT
OVR01_0037_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxcgttaaaatggGGCTACCATT
ITT01_0037_E12.b :                          nnnaatgxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-003100 : TCCTTCCGTCTCGGCCTCGCTTGGTGTTTAACCGCGCGCGCACCACAAGGCCGGGGGCTG
                   ---------+---------+---------+---------+---------+---------+ 123
ITT01_0055_G09.b : TCCTTCCGTCTCGGCCTCGCTTGGTGTTTAACCGCGCGCGCACCACAAGGCCGGGGGCTG
ADR01_0099_A04.b : TCCTTCCGTCTTGGCCTCGCTTGGTGTTTAACCGCGCGCGCACCACAAGGCCGGGGGCTG
OVR01_0037_A08.b : TCCTTCCGTCTCGGCCTCGCTCGTTGTTTAACCGCGCGCGCACCACAAGGCCGGGGGCTG
ITT01_0037_E12.b : xxxxxxxxxxxxxxxxxxxxccttccgtcttggcctcgcttggtgttaaccgcgcgcgca


20110601C-003100 : AGGCGGCCGGGCTCTCCGGGCCAGCCTCTCCCCTGGACCCCGCCCCGCCGGGAGTTCTGC
                   ---------+---------+---------+---------+---------+---------+ 183
ITT01_0055_G09.b : AGGCGGCCGGGCTCTCCGGGCCAGCCTCGCCCCTGGACCCCGCCCCGCCGGGAGTTCTGC
ADR01_0099_A04.b : AGGCGGCCGGGCTCTCCGGGCCAGCCTCTCCCCTGGACCCCGCCCCGCCGGGAGTTCTGC
OVR01_0037_A08.b : AGGCGGCCGGGCTCTCCGGGCCAGCCTCGCCCCTGGACCCCGCCCCGCCGGGAGTTCTGC
ITT01_0037_E12.b : ccacaaggccgggggctgaggcgGCCTCTCCCCTGGACCCCGCCCCGCCGGGAGTTCTGC


20110601C-003100 : AGCTCCCGCTGTCCAGCACCCGCAGTCTCAGCCGAGGTTGCCGCGGCGCCAAGACACAAG
                   ---------+---------+---------+---------+---------+---------+ 243
ITT01_0055_G09.b : AGCTCCCGCTGTCCAGCACCCGCAGTCTCAGCCGAGGTTGCCGCGGCGCCAAGACACAAG
ADR01_0099_A04.b : AGCTCCCGCTGTCCAGCACCCGCAGTCTCAGCCGAGGTTGCCGCGGCGCCAAGACACAAG
OVR01_0037_A08.b : AGCTCCCGCTGTCCAGCACCCGCAGTCTCAGCCGAGGTTGCCGCGGCGCCAAGACACAAG
ITT01_0037_E12.b : AGCTCCCGCTGTCCAGCACCCGCAGTCTCAGCCGAGGTTGCCGCGGCGCCAAGACACAAG


20110601C-003100 : TCATCTCCCCCAGCAAGCGGGCCCGGCCTGCGGAGGAAAGCCGCAAGCGACTCCGCTTTG
                   ---------+---------+---------+---------+---------+---------+ 303
ITT01_0055_G09.b : TCATCTCCCCCAGCAAGCGGGCCCGGCCTGCGGAGGAAAGCCGCAAGCGACTCCGCTTTG
ADR01_0099_A04.b : TCATCTCCCCCAGCAAGCGGGCCCGGCCTGCGGAGGAAAGCCGCAAGCGACTCCGCTTTG
OVR01_0037_A08.b : TCATCTCCCCCAGCAAGCGGGCCCGGCCTGCGGAGGAAAGCCGCAAGCGACTCCGCTTTG
ITT01_0037_E12.b : TCATCTCCCCCAGCAAGCGGGCCCGGCCTGCGGAGGAAAGCCGCAAGCGACTCCGCTTTG


20110601C-003100 : CCCGGCTCTCAGAGCACGCCACTGCCCCAACCAAAGGGTCTGAGCGCGCCGCGGGATATG
                   ---------+---------+---------+---------+---------+---------+ 363
ITT01_0055_G09.b : CCCGGCTCTCAGAGCACGCCACTGCCCCAACCAAAGGGTCTGAGCGCGCCGCGGGATATG
ADR01_0099_A04.b : CCCGGCTCTCAGAGCACGCCACTGCCCCAACCAAAGGGTCTGAGCGCGCCGCGGGATATG
OVR01_0037_A08.b : CCCGGCTCTCAGAGCACGCCACTGCCCCAACCAAAGGGTCTGAGCGCGCCGCGGGATATG
ITT01_0037_E12.b : CCCGGCTTTCAGAGCACGCCACTGCCCCAACCAAAGGGTCTGAGCGCGCCGCGGGATATG


20110601C-003100 : ACCTGTATAGTGCCTACGATTACACAGTACTGCCGATGGAGAAAGCCATTGTGAAAACCG
                   ---------+---------+---------+---------+---------+---------+ 423
ITT01_0055_G09.b : ACCTGTACAGTGCCTACGATTACACAGTACTGCCGATGGAGAAAGCCATTGTGAAAACCG
ADR01_0099_A04.b : ACCTGTATAGTGCCTACGATTACACAGTACTGCCGATGGAGAAAGCCATTGTGAAAACCG
OVR01_0037_A08.b : ACCTGTACAGTGCCTACGATTACACAGTACTGCCGATGGAGAAAGCCATTGTGAAAACCG
ITT01_0037_E12.b : ACCTGTATAGTGCCTACGATTACACAGTACTGCCGATGGAGAAAGCCATTGTGAAAACCG


20110601C-003100 : ACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGGCGAGTAGCTCCACGTTCTGGCTTGG
                   ---------+---------+---------+---------+---------+---------+ 483
ITT01_0055_G09.b : ACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGGCGAGTAGCTCCACGTTCTGGCTTGG
ADR01_0099_A04.b : ACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGGCGAGTAGCTCCACGTTCTGGCTTGG
OVR01_0037_A08.b : ACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGGCGAGTAGCTCCACGTTCTGGCTTGG
ITT01_0037_E12.b : ACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGGCGAGTAGCTCCACGTTCTGGCTTGG


20110601C-003100 : CTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATG
                   ---------+---------+---------+---------+---------+---------+ 543
ITT01_0055_G09.b : CTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATG
ADR01_0099_A04.b : CTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATG
OVR01_0037_A08.b : CTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATG
ITT01_0037_E12.b : CTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATG


20110601C-003100 : TTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAA
                   ---------+---------+---------+---------+---------+---------+ 603
ITT01_0055_G09.b : TTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAA
ADR01_0099_A04.b : TTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAA
OVR01_0037_A08.b : TTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAA
ITT01_0037_E12.b : TTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAA


20110601C-003100 : TCGCACAGCTCATTTGTGAACGGATTTTTTACCCAGAAATAGAGGAAGTTCAAGTTTTGG
                   ---------+---------+---------+---------+---------+---------+ 663
ITT01_0055_G09.b : TCGCACAGCTCATTTGTGAACGGATTTTTTACCCAGAAATAGAGGAAGTTCAAGTTTTGG
ADR01_0099_A04.b : TCGCACAGCTCATTTGTGAACGGATTTTTTACCCAGAAATAGAGGAAGTTCAAGTTTTGG
OVR01_0037_A08.b : TCGCACAGCTCATTTGTGAACGGATTTTTTACCCAGAAATAGAGGAAGTTCAAGTTTTGG
ITT01_0037_E12.b : TCGCACAGCTCATTTGTGAACGGATTTTTTACCCAGAAATAGAGGAAGTTCAAGTTTTGG


20110601C-003100 : ATGACACCGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAACGAATTAAAATTTACGCC
                   ---------+---------+---------+---------+---------+---------+ 723
ITT01_0055_G09.b : ATGACACCGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAACGAATTAAAATTTACGCC
ADR01_0099_A04.b : ATGACACCAAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAACGAATTAAAATTTACGCC
OVR01_0037_A08.b : ATGACACCGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAACGAATTAAAATTTACGCC
ITT01_0037_E12.b : ATGACACCGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAACGAATTAAAATTTACGCC


20110601C-003100 : AAGAACAGAAAATGAGAAAATGTACTTTTTCCTTTAAAATAAAAACTTTGCTTCAAAAAA
                   ---------+---------+---------+---------+---------+---------+ 783
ITT01_0055_G09.b : AAGAACAGAAAATGAGAAAATGTACTTTTTCCTTTAAAATAAAAACTTTGCTTCAAAAAA
ADR01_0099_A04.b : AAGAACAGAAAATGAGAAAATGTACTTTTTCCTTTAAAATAAAAACTTTGCTTCAAAAAA
OVR01_0037_A08.b : AAGAACAGAAAATGAGAAAATGTACTTTTTCCTTTAAAATAAAAACTTTGCTTCAAAAAA
ITT01_0037_E12.b : AAGAACAGAAAATGAGAAAATGTACTTTTTCCTTTAAAATAAAAACTTTGCTTCaaaaaa


20110601C-003100 : AAAAAAAAAAAAAAA.............................................
                   ---------+---------+---------+---------+---------+---------+ 798
ITT01_0055_G09.b : AAAAAAAAAAgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0099_A04.b : AAAAAAAAAAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_A08.b : AAAAAAAAAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0037_E12.b : aaaaaaaaaaaaaaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-003100 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 798
ITT01_0055_G09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0099_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0037_E12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxnnnnnn


20110601C-003100 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 798
ITT01_0055_G09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0099_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0037_E12.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-003100 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 798
ITT01_0055_G09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0099_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0037_E12.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-003100 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 798
ITT01_0055_G09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0099_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_A08.b : cttcaaaaaaattaaaggttcctaggggaaaaaaaaaaattttttaaagggattaaatgg
ITT01_0037_E12.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-003100 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 798
ITT01_0055_G09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtatttccccgggacagggatc
ADR01_0099_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxattttccccggact
OVR01_0037_A08.b : ggttaaaacaaacctggcctattgctttggctctttggaaaagttttttcttaactgaaa
ITT01_0037_E12.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-003100 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 798
ITT01_0055_G09.b : caatggtggggattaaatccaagcccaaggtcattgaggcccaacctccaattgtttgat
ADR01_0099_A04.b : agggatccaattggtggggaatttaaatccaggtcaaggtcatttaggcccttagtcccc
OVR01_0037_A08.b : tattaaatttttttaaaaaaatattatttacccaccaaggaaacccttaaggggagattt
ITT01_0037_E12.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-003100 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 798
ITT01_0055_G09.b : aaatacccaccacttgaaggttctggctaaaaccccacccccggaacaaaaaaaaaagaa
ADR01_0099_A04.b : aagttgttctgaataaaccccctacccattggaaggtttactgcttaaaacctccaactc
OVR01_0037_A08.b : tcaaaatttttgtttttggtgggattatttttttttaaaaaa                 
ITT01_0037_E12.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-003100 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 798
ITT01_0055_G09.b : tgtgtgtactttttccttaggtaaaaaaaaacccaatcaaaaattttcgctttttg   
ADR01_0099_A04.b : cctgaccgaaaaaaagaagaattttttgtaattttttggccttaggtccaaaaaaaaccc
OVR01_0037_A08.b :                                                             
ITT01_0037_E12.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnn                              


20110601C-003100 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 798
ITT01_0055_G09.b :                                                             
ADR01_0099_A04.b : cattccaaaacttttcccctcgtggtgcaccaacac                       
OVR01_0037_A08.b :                                                             
ITT01_0037_E12.b :