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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-003170

Length: 894

Sequence:  [FASTA format sequence]
CCGCCGCGGG TTGGGGGGAC GCAGATCCGG GCCCAACTGC AGCTTCCTCC TGGCGGAGCT
GCATTTCCAG CCACCTCCGC AGCCCTGCCC TCGCGCGCCG AGCCGTTCCG GCGGTGCCGC
TGGAGGCGCG GAGCCCGCCC GGCGCGCCCA GCCCTGCAGC TCCGGCCGGG GCGGAGGCCG
CCGGACCGCG GAGATGCGGG GCGGGGGCAG GGCGCGGGGA TTACGGTGGG ATCATGGCAG
GGCTGGGCTC CGATCCCTGG TGGAAGAAAA CCCTTTACTT GACCGGGGGA GCTTTGCTGG
CCGCAGCTGC GTATCTGCTC CACGAACTCC TGGTCATTAG GAAACAGCAG GTGATTGACT
CCAAAGATGC TATTATTTTG CATCAGTTTG CAAGACCTAA CAATGGTGTC CCCAGTTTAT
CTCCGTTCTG CTTGAAAATG GAAACTTATT TAAGGATGGC TGACTTACCC TATCAGAACT
ATTTTGGTGG AAAACTCTCT GCTCAAGGAA AAATGCCTTG GATTGAATAT AACCATGAAA
AAGTTTCTGG GACAGAATTC ATAATTGACT TTCTGGAAGA GAAACTTGGA GTGAATTTAA
ACAAAAACCT TGGTCCTCAT GAAAGAGCCA TCTCCAGGGC GGTGACTAAG ATGGTGGAGG
AGCATTTCTA CTGGTGATAA GAAGTACATC ATGGGGCCCA AGCTTTCCAC TCTCGACGCC
ACTGTGTTTG GACACTTGGC ACAGGCAATG TGGACCTTAC CTGGGACGAG ACCTGAGCGG
CTGATAAAAG GTGAGCTGAT CAATCTGGCC TTGTACTGTG AGAGGATAAG GAGGAAATTC
TGGCCCGAGT GGCACCATGA TGATGACCAT ACCATCTATG AGTCCGAGGA GAGC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		C6orf168	hypothetical protein LOC84553 [Homo sapiens].	260	1e-69	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		6230409E13Rik	hypothetical protein LOC76132 [Mus musculus].	254	6e-68	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC475003	PREDICTED: similar to Y57A10A.26 [Canis familiaris].	260	1e-69

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		LOC783090	PREDICTED: chromosome 6 open reading frame 168-like [Bos taurus].	234	1e-61	O
		LOC783090	PREDICTED: chromosome 6 open reading frame 168-like [Bos taurus].	234	1e-61	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100156103	PREDICTED: uncharacterized protein C6orf168-like [Sus scrofa].	260	8e-70	O
		LOC100626900	PREDICTED: uncharacterized protein C6orf168-like [Sus scrofa].	245	2e-65	O

Alignment:      TOP

20110601C-003170 : ........................CCGCCGCGGGTTGGGGGGACGCAGATCCGGGCCCAA
                   ---------+---------+---------+---------+---------+---------+ 36
TES01_0085_C10.b :           gcgttggctctggaCCGCCGCGGGTTGGGGGGACGCAGATCCGGGCCCAA
TES01_0068_G03.b :      ttcctgctttggctctggaCCGCCGCGGGTTGGGGGGACGCAGATCCGGGCCCA*
THY01_0065_D02.b : ggtggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRT1_0029_D02.b :                gactacgtcagcgncggxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-003170 : CTGCAGCTTCCTCCTGGCGGAGCTGCATTTCCAGCCACCTCCGCAGCCCTGCCCTCGCGC
                   ---------+---------+---------+---------+---------+---------+ 96
TES01_0085_C10.b : CTGCAGCTTCCTCCTGGCGGAGCTGCATTTCCAGCCACCTCCGCAGCCCTGCCCTCGCGC
TES01_0068_G03.b : CTGCAGCTTCCTCCTGGCGGAGCTGCATTTCCAGCCACCTCCGCAGCCCTGCCCTCGCGC
THY01_0065_D02.b : xxxxxxxxxxxxxxxxxxxxxxxxGCATTTCCAGCCACCTCCGCAGCCCTGCCCTCGCGC
OVRT1_0029_D02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxcTTCCAGCCACCTCCGCAGCCCTGCCCTCGCGC


20110601C-003170 : GCCGAGCCGTTCCGGCGGTGCCGCTGGAGGCGCGGAGCCCGCCCGGCGCGCCCAGCCCTG
                   ---------+---------+---------+---------+---------+---------+ 156
TES01_0085_C10.b : GCCGAGCCGTTCCGGCGGTGCCGCTGGAGGCGCGGAGCCCGCCCGGCGCGCCCAGCCCTG
TES01_0068_G03.b : GCCGAGCCGTTCCGGCGGTGCCGCTGGAGGCGCGGAGCCCGCCCGGCGCGCCCAGCCCTG
THY01_0065_D02.b : GCCGAGCCGTTCCGGCGGTGCCGCTGGAGGCGCGGAGCCCGCCCGGCGCGCCCAGCCCTG
OVRT1_0029_D02.b : GCCGAGCCGTTCCGGCGGTGCCGCTGGAggcgcggagcccgcccggcgcgcccagccctg


20110601C-003170 : CAGCTCCGGCCGGGGCGGAGGCCGCCGGACCGCGGAGATGCGGGGCGGGGGCAGGGCGCG
                   ---------+---------+---------+---------+---------+---------+ 216
TES01_0085_C10.b : CAGCTCCGGCCGGGGCGGAGGCCGCCGGACCGCGGAGATGCGGGGCGGGGGCAGGGCGCG
TES01_0068_G03.b : CAGCTCCGGCCGGGGCGGAGGCCGCCAGACCGCGGAGATGCGGGGCGGGGGCAGGGCGCG
THY01_0065_D02.b : CAGCTCCGGCCGGGGCGGAGGCCGCCGGACCGCGGAGATGCGGGGCGGGGGCAGGGCGCG
OVRT1_0029_D02.b : cggctccggccggggcggaggccgccggACCGCGGAGATGCGGGGCGGGGGCAGGGCGCG


20110601C-003170 : GGGATTACGGTGGGATCATGGCAGGGCTGGGCTCCGATCCCTGGTGGAAGAAAACCCTTT
                   ---------+---------+---------+---------+---------+---------+ 276
TES01_0085_C10.b : GGGATTACGGTGGGATCATGGCAGGGCTGGGCTCCGATCCCTGGTGGAAGAAAACCCTTT
TES01_0068_G03.b : GGGATTACGGTGGGATCATGGCAGGGCTGGGCTCCGATCCCTGGTGGAAGAAAACCCTTT
THY01_0065_D02.b : GGGATTACGGTGGGATCATGGCAGGGCTGGGCTCCGATCCCTGGTGGAAGAAAACCCTTT
OVRT1_0029_D02.b : GGGATTACGGTGGGATCATGGCAGGGCTGGGCTCCGATCCCTGGTGGAAGAAAACCCTTT


20110601C-003170 : ACTTGACCGGGGGAGCTTTGCTGGCCGCAGCTGCGTATCTGCTCCACGAACTCCTGGTCA
                   ---------+---------+---------+---------+---------+---------+ 336
TES01_0085_C10.b : ACTTGACCGGGGGAGCTTTGCTGGCCGCAGCTGCGTATCTGCTCCACGAACTCCTGGTCA
TES01_0068_G03.b : ACTTGACCGGGGGAGCTTTGCTGGCCGCAGCTGCGTATCTGCTCCACGAACTCCTGGTCA
THY01_0065_D02.b : ACTTGACCGGGGGAGCTTTGCTGGCCGCAGCTGCGTATCTGCTCCACGAACTCCTGGTCA
OVRT1_0029_D02.b : ACTTGACCGGGGGAGCTTTGCTGGCCGCAGCTGCGTATCTGCTCCACGAACTCCTGGTCA


20110601C-003170 : TTAGGAAACAGCAGGTGATTGACTCCAAAGATGCTATTATTTTGCATCAGTTTGCAAGAC
                   ---------+---------+---------+---------+---------+---------+ 396
TES01_0085_C10.b : TTAGGAAACAGCAGGTGATTGACTCCAAAGATGCTATTATTTTGCATCAGTTTGCAAGAC
TES01_0068_G03.b : TTAGGAAACAGCAGGTGATTGACTCCAAAGATGCTATTATTTTGCATCAGTTTGCAAGAC
THY01_0065_D02.b : TTAGGAAACAGCAGGAGATTGACTCCAAAGATGCTATTATTTTGCATCAGTTTGCAAGAC
OVRT1_0029_D02.b : TTAGGAAACAGCAGGAGATTGACTCCAAAGATGCTATTATTTTGCATCAGTTTGCAAGAC


20110601C-003170 : CTAACAATGGTGTCCCCAGTTTATCTCCGTTCTGCTTGAAAATGGAAACTTATTTAAGGA
                   ---------+---------+---------+---------+---------+---------+ 456
TES01_0085_C10.b : CTAACAATGGTGTCCCCAGTTTATCTCCGTTCTGCTTGAAAATGGAAACTTATTTAAGGA
TES01_0068_G03.b : CTAACAATGGTGTCCCCAGTTTATCTCCGTTCTGCTTGAAAATGGAAACTTATTTAAGGA
THY01_0065_D02.b : CTAGCAATGGTGTCCCCAGTTTATCTCCGTTCTGCTTGAAAATGGAAACTTATTTAAGGA
OVRT1_0029_D02.b : CTAACAATGGTGTCCCCAGTTTATCTCCGTTCTGCTTGAAAATGGAAACTTATTTAAGGA


20110601C-003170 : TGGCTGACTTACCCTATCAGAACTATTTTGGTGGAAAACTCTCTGCTCAAGGAAAAATGC
                   ---------+---------+---------+---------+---------+---------+ 516
TES01_0085_C10.b : TGGCTGACTTACCCTATCAGAACTATTTTGGTGGAAAACTCTCTGCTCAAGGAAAAATGC
TES01_0068_G03.b : TGGCTGACTTACCCTATCAGAACTATTTTGGTGGAAAACTCTCTGCTCAAGGAAAAATGC
THY01_0065_D02.b : TGGCTGACTTACCCTATCAGAACTATTTTGGTGGAAAACTCTCTGCTCAAGGAAAAATGC
OVRT1_0029_D02.b : TGGCTGACTTACCCTATCAGAACTATTTTGGTGGAAAACTCTCTGCTCAAGGAAAAATGC


20110601C-003170 : CTTGGATTGAATATAACCATGAAAAAGTTTCTGGGACAGAATTCATAATTGACTTTCTGG
                   ---------+---------+---------+---------+---------+---------+ 576
TES01_0085_C10.b : CTTGGATTGAATATAACCATGAAAAAGTTTCTGGGACAGAATTCATAATTGACTTTCTGG
TES01_0068_G03.b : CTTGGATTGAATATAACCATGAAAAAGTTTCTGGGACAGAATTCATAATTGACTTTCTGG
THY01_0065_D02.b : CTTGGATTGAATATAACCATGAAAAAGTTTCTGGGACAGAATTCATAATTGACTTTCTGG
OVRT1_0029_D02.b : CTTGGATTGAATATAATCATGAAAAAGTTTCTGGGACAGAATTCATAATTGACTTTCTGG


20110601C-003170 : AAGAGAAACTTGGAGTGAATTTAAACAAAAACCTTGGTCCTCATGAAAGAGCCATCTCCA
                   ---------+---------+---------+---------+---------+---------+ 636
TES01_0085_C10.b : AAGAGAAACTTGGAGTGAATTTAAACAAAAACCTTGGTCCTCATGAAAGAGCCATCTCCA
TES01_0068_G03.b : AGGAGAAACTTGGAGTGAATTTAAACAAAAACCTTGGTCCTCATGAAAGAGCCATCTCCA
THY01_0065_D02.b : AAGAGAAACTTGGAGTGAATTTAAACAAAAACCTTGGTCCTCATGAAAGAGCCATCTCCA
OVRT1_0029_D02.b : AAGAGAAACTTGGAGTGAATTTAAACAAAAACCTTGGTCCTCATGAAAGAGCCATCTCCA


20110601C-003170 : GGGCGGTGACTAAGATGGTGGAGGAGCATTTCTACTGGTGATAAGAAGTACATCATG*GG
                   ---------+---------+---------+---------+---------+---------+ 695
TES01_0085_C10.b : GGGCGGTGACTAAGATGGTGGAGGAGCATTTCTACTGGTGATAAGAAGTACATCATGCGG
TES01_0068_G03.b : GGGCGGTGACTAAGATGGTGGAGGAGCATTTCTACTGGTGATAAGAAGTACATCATG*GG
THY01_0065_D02.b : GGGCGGTGACTAAGATGGTGGAGGAGCATTTCTACTGGTGATAAGAAGTACATCATG*GG
OVRT1_0029_D02.b : GGGCGGTGACTAAGATGGTGGAGGAGCATTTCTACTGGTGATAAGAAGTACATCATG*GG


20110601C-003170 : GCCCAAGCTTTCCACTCTCGACGCCACTGTGTTTGGACAC*TTGGCACAGGCAATGTGGA
                   ---------+---------+---------+---------+---------+---------+ 754
TES01_0085_C10.b : GCCCAAGCTTTCCCCTCTCGACGCCCCCGTGTTTGGAACC*TTGGCACATGCTATGTGGA
TES01_0068_G03.b : GCCCAAGCTTTCCACTCTCGACGCCACTGTGTTTGGACAC*TTGGCACAGGCAATGTGGA
THY01_0065_D02.b : GCCCAAGCTTTCCACTCTCGACGCCACTGTGTTTGGACACCTTGGCACAGGCAATGTGGA
OVRT1_0029_D02.b : GGCCAAGCTTTCCACTCTCGATGCCCCTGTGTTTGGACAC*TTGGCACAGGCAATGTGGA


20110601C-003170 : CCTTACCTGGGACGAGACCTGAGCGGCTGATAAAAGGTGAGCTGATCAATCTGGCCTTGT
                   ---------+---------+---------+---------+---------+---------+ 814
TES01_0085_C10.b : CCTTACCTGGGAacaagccctgaccggctgattaaaggtgacctgaccattctggccctt
TES01_0068_G03.b : CCTTACCTGGGACGAGACCTGAGCGGCTGATAAAAAGTGAGCTGATCcatctgggccatg
THY01_0065_D02.b : CCTTACCTGGGACGAGACCTGAGCGGCTGATAAAAGGTGAGCTGATCAATCTGGCCATGT
OVRT1_0029_D02.b : CCTTACCTGGGACGAGACCTGAGCGGCTGAATAAAGGTGAGCTGATCATCCTGGCCTTGG


20110601C-003170 : ACTGTGAGAGGATAAGGAGGAAATTCTGGCCCGAGTGGCACCATGATGATGACCATACCA
                   ---------+---------+---------+---------+---------+---------+ 874
TES01_0085_C10.b : gtctgggaaaaggataaggaaggaatttccgggccctagtggcccccttgatgaatgacc
TES01_0068_G03.b : tactgtgagaggattaggaggaaattctggcccgagtggcaccctgagtatgacaatccc
THY01_0065_D02.b : ACTGTGAGAGGATAAGGAGGAAATTCTGGCCCGAGTGGCACCATGATGATGACCATACCA
OVRT1_0029_D02.b : TCTGTGAGAGGATAGGGAGaaattccggcccgagtggcccctgatgatgacaataccctc


20110601C-003170 : TCTATGAGTCCGAGGAGAGC........................................
                   ---------+---------+---------+---------+---------+---------+ 894
TES01_0085_C10.b : aatccctcctttgaattccaaaggaaagccttggaaagtcaccaaaacccctcccccccc
TES01_0068_G03.b : ctctatgagtctcaggagaacactgaaggcaccaaaacccacacccccccgcctggattt
THY01_0065_D02.b : TCTATGAGTCCGAGGAGAGCattgaaaggcgcaaaaccccccccgcccctgcttggattt
OVRT1_0029_D02.b : tttgagtcccaagaaagcagtgtaagtctccaaaaccccacccccctcgcgggatttcac


20110601C-003170 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 894
TES01_0085_C10.b : ctggctgggttttccccttttttctctatggccaaaaaacctttttgaaaatgtagggaa
TES01_0068_G03.b : ccccttttactccaggaaagaaacctttgaaaaagagggaccaaaaaaatgtttttcccg
THY01_0065_D02.b : cacctttttctccaggaacaagacctttggaaaataagggagccaaaaacagtttttcca
OVRT1_0029_D02.b : tttttccccaggaccaaaacctttgaatatgagggaccaaaaacatttttttcgggaccc


20110601C-003170 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 894
TES01_0085_C10.b : ccaaaaaacctttttttccccggaaccccccgattcctaaatttccctggggaccccctc
TES01_0068_G03.b : gacccccaatacagatttcctggggaacccccctctttttttccgaatgggacatggtgt
THY01_0065_D02.b : gaacccccataaccattttcccgggaccctcccctctttgtttcccacctggacattgat
OVRT1_0029_D02.b : cagaacggatttccctgggactcccttttttttttcggactgggacgtgattactccccc


20110601C-003170 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 894
TES01_0085_C10.b : ctctctttggttctccaagcgggcaacggggtggcgacttctccctaccccttttaacct
TES01_0068_G03.b : gcttctccgaccctgaactcttgaaggtgttgttggcccccctataccctctcttgttga
THY01_0065_D02.b : gactacaccaaacccttaaacattgcaactggttttttggccc                
OVRT1_0029_D02.b : tcccccgaacgtgccatggatttttggcccccccgtacccctttggtgggagtccccccc


20110601C-003170 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 894
TES01_0085_C10.b : ggcctagttgaatttttgtggccccctttaacccccctctctgcttggaggctcctcccc
TES01_0068_G03.b : ggctctcccctcctgggggtgggtcacattccccgggtaaatatcctctcattctggggg
THY01_0065_D02.b :                                                             
OVRT1_0029_D02.b : cctggggtgggccccctcccccgtaaaaattcctcccacccgtggggggtcttcttgctg


20110601C-003170 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 894
TES01_0085_C10.b : ctcccggtggggntcggtccctcctttctcccggggagataaattccctccccatacctg
TES01_0068_G03.b : aggctcttgtgtggggacaatttcctccaaacacttgtcacataacgccctttatttttt
THY01_0065_D02.b :                                                             
OVRT1_0029_D02.b : ttacatttccctcaatattggtgattagacccctttttttttgttttttttcatataaac


20110601C-003170 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 894
TES01_0085_C10.b : cgtgggaagaggtcttcttgttctgtggacatcctatcttcctccctcaattacttggtg
TES01_0068_G03.b : tttttggtcaataaattctagaactcttcttgggtctcttgaataaaatcgtgttataaa
THY01_0065_D02.b :                                                             
OVRT1_0029_D02.b : caaacatcttcggggcccttttgaaactacgtgcaaaacaaaaaatggcgcctggtttca


20110601C-003170 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 894
TES01_0085_C10.b : ta                                                         
TES01_0068_G03.b : aataaaaaaaaatggccttgttctcaactagctgacgccgtccttttatttataaattac
THY01_0065_D02.b :                                                             
OVRT1_0029_D02.b : ttcgtttgcgcggcctctattttataattactacaccaccttctctcttcttaaataatg


20110601C-003170 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 894
TES01_0085_C10.b :                                                             
TES01_0068_G03.b : cactcctcctctctcctttttaacaa                                 
THY01_0065_D02.b :                                                             
OVRT1_0029_D02.b : atg