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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-003635

Length: 1,055

Sequence [FASTA format sequence]
TCTTGGTAGA TCACTGACAC CTCATCCAGC CCTGGGGGCG GGGGGTGAAA ACTTGGCACC
AGCGTCTCGG CCCGAGCACC ACGGTGATTT GCTCTCCTGG TGGAGAGAGC TGGAAGGAAG
GAGTCGGCGC GCAAATAATG AAGGAGCACG GGGCCACCTT CAGTAGCGGC GGCATCGGCG
GCAGCGGTGA CTCGGCTATG GACAGCCTGC AGCCGCTCCA GCCTAACTAC ATGTCTGTGT
GTTTGTTTGC AGAAGAATCT TATCAAAAAT TAGCAATGGA AACGCTGGAG GAACTGGACT
GGTGCTTAGA CCAGCTAGAG ACCATCCAGA CCTACCGCTC TGTCAGTGAG ATGGCTTCCA
ACAAGTTCAA AAGAATGCTG AACCGGGAGC TGACACACCT CTCAGAAATG AGCCGTTCGG
GGAATCAGGT GTCTGAATAC ATTTCAAATA CTTTCTTAGA CAAGCAGAAT GACGTGGAGA
TTCCATCTCC TACCCAGAAA GACAGGGAGA AAAAGAAGAA GCAGCAGCTC ATGACACAGA
TAAGCGGAGT GAAAAAACTG ATGCACAGTT CAAGCTTAAA TAACACAAGC ATTTCACGCT
TTGGAGTCAA CACGGAAAAT GAAGATCATC TGGCCAAGGA GCTGGAAGAC CTGAACAAAT
GGGGCCTTAA CATCTTCAAT GTGGCTGGCT ATTCACACAA CAGGCCCTTG ACATGCATCA
TGTACGCCAT CTTCCAGGAA AGAGACCTCC TAAAGACATT CAAAATCTCC TCGGACACGC
TTGTTACCTA CATGATGACG TTAGAAGACC ATTACCATTC CGACGTGGCC TATCATAACA
GCCTGCACGC TGCCGACGTG GCCCAGTCAA CCCATGTTCT TCTTTCCACG CCAGCGTTAG
ATGTGAGTAG TTATGATCCG TTTTGCCTAC CTGCCCTTCC TCTTTTAAAG TACCATGCAG
GAGTTCCCGT CGCGGCACAG TGGTTAACGA ATCCNACTAG GAACCATGAN GTGGTGGGTT
CGGTCCCTGG CCTTGCTCAG TGGGTTAAGG ATCTG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPDE4BcAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 2 [Homo sapiens]. 466e-131O
Contig/Assembly ProteinPDE4BcAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 1 [Homo sapiens]. 432e-121
Contig/Assembly ProteinPDE4BcAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 1 [Homo sapiens]. 432e-121
Contig/Assembly ProteinPDE4BcAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 3 [Homo sapiens]. 432e-121
Contig/Assembly ProteinPDE4DcAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D1 [Homo sapiens]. 363e-100O
Contig/Assembly ProteinPDE4DcAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D8 [Homo sapiens]. 3547e-98
Contig/Assembly ProteinPDE4DcAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D4 [Homo sapiens]. 3547e-98
Contig/Assembly ProteinPDE4DcAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D3 [Homo sapiens]. 3547e-98
Contig/Assembly ProteinPDE4DcAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D7 [Homo sapiens]. 3547e-98
Contig/Assembly ProteinPDE4DcAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D9 [Homo sapiens]. 3547e-98


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPde4bphosphodiesterase 4B isoform 2 [Mus musculus]. 462e-130O
Contig/Assembly ProteinPde4bphosphodiesterase 4B isoform 1 [Mus musculus]. 434e-122
Contig/Assembly ProteinPde4bphosphodiesterase 4B isoform 3 [Mus musculus]. 361e-100O
Contig/Assembly ProteinPde4dcAMP-specific 3',5'-cyclic phosphodiesterase 4D [Mus musculus]. 3547e-98
Contig/Assembly ProteinPde4bphosphodiesterase 4B isoform 4 [Mus musculus]. 3532e-97O
Contig/Assembly ProteinPde4acAMP-specific 3',5'-cyclic phosphodiesterase 4A isoform 5 [Mus musculus]. 3202e-87
Contig/Assembly ProteinPde4ccAMP-specific 3',5'-cyclic phosphodiesterase 4C [Mus musculus]. 2793e-75
Contig/Assembly ProteinPde4acAMP-specific 3',5'-cyclic phosphodiesterase 4A isoform 1 [Mus musculus]. 2579e-69O
Contig/Assembly ProteinPde3bcGMP-inhibited 3',5'-cyclic phosphodiesterase B [Mus musculus]. 65.19e-11
Contig/Assembly ProteinPde7bcAMP-specific 3',5'-cyclic phosphodiesterase 7B [Mus musculus]. 64.71e-10O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC479540PREDICTED: similar to phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila) [Canis familiaris]. 433e-121
Contig/Assembly ProteinLOC487221PREDICTED: similar to cAMP-specific 3,5-cyclic phosphodiesterase 4D (DPDE3) (PDE43) [Canis familiaris]. 3562e-98
Contig/Assembly ProteinLOC609938PREDICTED: similar to cAMP-specific 3,5-cyclic phosphodiesterase 4C (DPDE1) (PDE21) [Canis familiaris]. 2986e-81
Contig/Assembly ProteinLOC483996PREDICTED: similar to cAMP-specific 3,5-cyclic phosphodiesterase 7B [Canis familiaris]. 66.25e-11O
Contig/Assembly ProteinLOC488939PREDICTED: similar to phosphodiesterase 8B isoform 1 [Canis familiaris]. 629e-10
Contig/Assembly ProteinLOC475272PREDICTED: similar to phosphodiesterase 1C, calmodulin-dependent 70kDa isoform 1 [Canis familiaris]. 60.13e-09O
Contig/Assembly ProteinLOC486975PREDICTED: similar to phosphodiesterase 7A isoform a isoform 1 [Canis familiaris]. 60.13e-09O
Contig/Assembly ProteinLOC486975PREDICTED: similar to phosphodiesterase 7A isoform a isoform 2 [Canis familiaris]. 60.13e-09O
Contig/Assembly ProteinLOC611730PREDICTED: similar to cGMP-inhibited 3,5-cyclic phosphodiesterase B (Cyclic GMP inhibited phosphodiesterase B) (CGI-PDE B) (CGIPDE1) (CGIP1) [Canis familiaris]. 60.13e-09
Contig/Assembly ProteinLOC475272PREDICTED: similar to Calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase 1C (Cam-PDE 1C) (hCam-3) isoform 2 [Canis familiaris]. 60.13e-09O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPDE4BcAMP-specific 3',5'-cyclic phosphodiesterase 4B [Bos taurus]. 433e-121
Contig/Assembly ProteinPDE4DPREDICTED: phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) isoform 1 [Bos taurus]. 3562e-98
Contig/Assembly ProteinPDE4DPREDICTED: phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila) [Bos taurus]. 3562e-98
Contig/Assembly ProteinPDE4CPREDICTED: phosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila) [Bos taurus]. 2941e-79
Contig/Assembly ProteinPDE4CcAMP-specific 3',5'-cyclic phosphodiesterase 4C [Bos taurus]. 2941e-79
Contig/Assembly ProteinPDE4Aphosphodiesterase 4A [Bos taurus]. 2762e-74O
Contig/Assembly ProteinPDE7BcAMP-specific 3',5'-cyclic phosphodiesterase 7B [Bos taurus]. 66.25e-11O
Contig/Assembly ProteinLOC100337134PREDICTED: phosphodiesterase 8A-like [Bos taurus]. 63.24e-10O
Contig/Assembly ProteinPDE8BPREDICTED: phosphodiesterase 8B [Bos taurus]. 63.24e-10
Contig/Assembly ProteinPDE1CPREDICTED: phosphodiesterase 1C, calmodulin-dependent 70kDa [Bos taurus]. 60.13e-09


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPDE4BcAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 2 [Sus scrofa]. 476e-135O
Contig/Assembly ProteinPDE4BcAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 1 [Sus scrofa]. 434e-122
Contig/Assembly ProteinLOC100037967PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform 5 [Sus scrofa]. 3561e-98
Contig/Assembly ProteinLOC100037967PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform 4 [Sus scrofa]. 3561e-98
Contig/Assembly ProteinLOC100037967PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform 6 [Sus scrofa]. 3561e-98
Contig/Assembly ProteinLOC100037967PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform 3 [Sus scrofa]. 3561e-98
Contig/Assembly ProteinLOC100037967PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform 2 [Sus scrofa]. 3561e-98
Contig/Assembly ProteinLOC100037967PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform 7 [Sus scrofa]. 3544e-98O
Contig/Assembly ProteinLOC100037967PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform 1 [Sus scrofa]. 3009e-82O
Contig/Assembly ProteinLOC100620216PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4B-like, partial [Sus scrofa]. 2983e-81O


Assembly Members: 9      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
ITT010003H02ITT01_0003_H02.bBW976299 
LVRM10039G05LVRM1_0039_G05.bCJ001782 
LVRM10151G01LVRM1_0151_G01.bBP453034 AK346358
LVRM10193D06LVRM1_0193_D06.bCJ006434 
OVRM10026E07OVRM1_0026_E07.bBP150517 
OVRM10170C02OVRM1_0170_C02.bBP456638 
PBL010005B01PBL01_0005_B01.bBW968721 
PBL010038C03PBL01_0038_C03.bBP155522 
PBL010107D12PBL01_0107_D12.bBW975611 

  

SNPs: 2      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
221A200.250WSCAA/Q
G240.750CAG/Q
725C300.500BSTAC/Y
T030.500TAT/Y


Alignment:      TOP

20110601C-003635 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0151_G01.b : cagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0003_H02.b : nnnggataaacaxxxxxxxxxxxxxxxxxxxx
LVRM1_0039_G05.b :
PBL01_0038_C03.b :
PBL01_0005_B01.b :
LVRM1_0193_D06.b :
OVRM1_0026_E07.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnn
OVRM1_0170_C02.b :
PBL01_0107_D12.b :
20110601C-003635 : .TCTTGGTAGATCACTGACACCTCATCCAGCCCTGGGGGCGGGGGGTGAAAACTTGGCAC
---------+---------+---------+---------+---------+---------+ 59
LVRM1_0151_G01.b : xTCTTGGTAGATCACTGACACCTCATCCAGCCCTGGGGGCGGGGGGTGAAAACTTGGCAC
ITT01_0003_H02.b : xxxxxxxxxxxxxxxxxxxxxxxxxTCCAGCCCTGGGGGCGGGGGGTGAAAACTTGGCAC
LVRM1_0039_G05.b : gagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PBL01_0038_C03.b : natgaacaxxxxxxxxxxxxxxxxx
PBL01_0005_B01.b : nnaaagtgaaagaxxxxxxxxxxxxxxxxxx
LVRM1_0193_D06.b : xxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0026_E07.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnxxxxxxxxxxxxxxxxxx
OVRM1_0170_C02.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxx
PBL01_0107_D12.b :
20110601C-003635 : CAGCGTCTCGGCCCGAGCACCACGGTGATTTGCTCTCCTGGTGGAGAGAGCTGGAAGGAA
---------+---------+---------+---------+---------+---------+ 119
LVRM1_0151_G01.b : CAGCGTCTCGGCCCGAGCACCACGGTGATTTGCTCTCCTGGTGGAGAGAGCTGGAAGGAA
ITT01_0003_H02.b : CAGCGTCTCGGCCCGAGCATCACGGTGATTTGCTCTCCTGGTGGAGAGAGCTGGAAGGAA
LVRM1_0039_G05.b : xxxxxxxxxxxxxxxxxxxxxxcGGTGATTTGCTCTCCTGGTGGAGAGAGCTGGAAGGAA
PBL01_0038_C03.b : xxxxxxxxxxxxxxxxxxxxxxxGGTGATTTGCTCTCCTGGTGGAGAGAGCTGGAAGGAA
PBL01_0005_B01.b : xxxxxxxxxxxxxxxxxxxxxxxxGTGATTTGCTCTCCTGGTGGAGAGAGCTGGAAGGAA
LVRM1_0193_D06.b : xxxxxxxxxxxxxxxxxxxxxxxgaTGATTTGCTCTCCTGGTGGAGAGAGCTGGAAGGAA
OVRM1_0026_E07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGATTTGCTCTCCTGGTGGAGAGAGCTGGAAGGAA
OVRM1_0170_C02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGATTTGCTCTCCTGGTGGAGAGAGCTGGAAGGAA
PBL01_0107_D12.b : naaagatcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-003635 : GGAGTCGGCGCGCAAATAATGAAGGAGCACGGGGCCACCTTCAGTAGCGGCGGCATCGGC
---------+---------+---------+---------+---------+---------+ 179
LVRM1_0151_G01.b : GGAGTCGGCGCGCAAATAATGAAGGAGCACGGGGCCACCTTCAGTAGCGGCGGCATCGGC
ITT01_0003_H02.b : GGAGTCGGCGCGCAAATAATGAAGGAGCACGGGGCCACCTTCAGTAGCGGCGGCATCGGC
LVRM1_0039_G05.b : GGAGTCGGCGCGCAAATAATGAAGGAGCACGGGGCCACCTTCAGTAGCGGCGGCATCGGC
PBL01_0038_C03.b : GGAGTCGGCGCGCAAATAATGAAGGAGCACGGGGCCACCTTCAGTAGCGGCGGCATCGGC
PBL01_0005_B01.b : GGAGTCGGCGCGCAAATAATGAAGGAGCACGGGGCCACCTTCAGTAGCGGCGGCATCGGC
LVRM1_0193_D06.b : GGAGTCGGCGCGCAAATAATGAAGGAGCACGGGGCCACCTTCAGTAGCGGCGGCATCGGC
OVRM1_0026_E07.b : GGAGTCGGCGCGCAAATAATGAAGGAGCACGGGGCCACCTTCAGTAGCGGCGGCATCGGC
OVRM1_0170_C02.b : GGAGTCGGCGCGCAAATAATGAAGGAGCACGGGGCCACCTTCAGTAGCGGCGGCATCGGC
PBL01_0107_D12.b : xxxxxxxxxxxxxxxxxxxTGAAGGAGCACGGGGCCACCTTCAGTAGCGGCGGCATCGGC
20110601C-003635 : GGCAGCGGTGACTCGGCTATGGACAGCCTGCAGCCGCTCCAGCCTAACTACATGTCTGTG
---------+---------+---------+---------+---------+---------+ 239
LVRM1_0151_G01.b : GGCAGCGGTGACTCGGCTATGGACAGCCTGCAGCCGCTCCAGCCTAACTACATGTCTGTG
ITT01_0003_H02.b : GGCAGCGGTGACTCGGCTATGGACAGCCTGCAGCCGCTCCAGCCTAACTACATGTCTGTG
LVRM1_0039_G05.b : GGCAGCGGTGACTCGGCTATGGACAGCCTGCAGCCGCTCCAGCCTAACTACATGTCTGTG
PBL01_0038_C03.b : GGCAGCGGTGACTCGGCTATGGACAGCCTGCAGCCGCTCCAACCTAACTACATGTCTGTG
PBL01_0005_B01.b : GGCAGCGGTGACTCGGCTATGGACAGCCTGCAGCCGCTCCAGCCTAACTACATGTCTGTG
LVRM1_0193_D06.b : GGCAGCGGTGACTCGGCTATGGACAGCCTGCAGCCGCTCCAGCCTAACTACATGTCTGTG
OVRM1_0026_E07.b : GGCAGCGGTGACTCGGCTATGGACAGCCTGCAGCCGCTCCAGCCTAACTACATGTCTGTG
OVRM1_0170_C02.b : GGCAGCGGTGACTCGGCTATGGACAGCCTGCAGCCGCTCCAGCCTAACTACATGTCTGTG
PBL01_0107_D12.b : GGCAGCGGTGACTCGGCTATGGACAGCCTGCAGCCGCTCCAACCTAACTACATGTCTGTG
20110601C-003635 : TGTTTGTTTGCAGAAGAATCTTATCAAAAATTAGCAATGGAAACGCTGGAGGAACTGGAC
---------+---------+---------+---------+---------+---------+ 299
LVRM1_0151_G01.b : TGTTTGTTTGCAGAAGAATCTTATCAAAAATTAGCAATGGAAACGCTGGAGGAACTGGAC
ITT01_0003_H02.b : TGTTTGTTTGCAGAAGAATCTTATCAAAAATTAGCAATGGAAACGCTGGAGGAACTGGAC
LVRM1_0039_G05.b : TGTTTGTTTGCAGAAGAATCTTATCAAAAATTAGCAATGGAAACGCTGGAGGAACTGGAC
PBL01_0038_C03.b : TGTTTGTTTGCAGAAGAATCTTATCAAAAATTAGCAATGGAAACGCTGGAGGAACTGGAC
PBL01_0005_B01.b : TGTTTGTTTGCAGAAGAATCTTATCAAAAATTAGCAATGGAAACGCTGGAGGAACTGGAC
LVRM1_0193_D06.b : TGTTTGTTTGCAGAAGAATCTTATCAAAAATTAGCAATGGAAACGCTGGAGGAACTGGAC
OVRM1_0026_E07.b : TGTTTGTTTGCAGAAGAAGCTTATCAAAAATTACCAATGGAAACGCTGGAGGAACTGGAC
OVRM1_0170_C02.b : TGTTTGTTTGCAGAAGAATCTTATCAAAAATTAGCAATGGAAACGCTGGAGGAACTGGAC
PBL01_0107_D12.b : TGTTTGTTTGCAGAAGAATCTTATCAAAAATTAGCAATGGAAACGCTGGAGGAACTGGAC
20110601C-003635 : TGGTGCTTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGTGAGATGGCTTCC
---------+---------+---------+---------+---------+---------+ 359
LVRM1_0151_G01.b : TGGTGCTTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGTGAGATGGCTTCC
ITT01_0003_H02.b : TGGTGCTTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGTGAGATGGCTTCC
LVRM1_0039_G05.b : TGGTGCTTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGTGAGATGGCTTCC
PBL01_0038_C03.b : TGGTGCTTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGTGAGATGGCTTCC
PBL01_0005_B01.b : TGGTGCTTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGTGAGATGGCTTCC
LVRM1_0193_D06.b : TGGTGCTTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGTGAGATGGCTTCC
OVRM1_0026_E07.b : TGGTGCTCACACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGTGAGATGGCTTCC
OVRM1_0170_C02.b : TGGTGCTTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGTGAGATGGCTTCC
PBL01_0107_D12.b : TGGTGCTTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTCAGTGAGATGGCTTCC
20110601C-003635 : AACAAGTTCAAAAGAATGCTGAACCGGGAGCTGACACACCTCTCAGAAATGAGCCGTTCG
---------+---------+---------+---------+---------+---------+ 419
LVRM1_0151_G01.b : AACAAGTTCAAAAGAATGCTGAACCGGGAGCTGACACACCTCTCAGAAATGAGCCGTTCG
ITT01_0003_H02.b : AACAAGTTCAAAAGAATGCTGAACCGGGAGCTGACACACCTCTCAAAAATGAGCCGTTCG
LVRM1_0039_G05.b : AACAAGTTCAAAAGAATGCTGAACCGGGAGCTGACACACCTCTCAGAAATGAGCCGTTCG
PBL01_0038_C03.b : AACAAGTTCAAAAGAATGCTGAACCGGGAGCTGACACACCTCTCAGAAATGAGCCGTTCG
PBL01_0005_B01.b : AACAAGTTCAAAAGAATGCTGAACCGGGAGCTGACACACCTCTCAGAAATGAGCCGTTCG
LVRM1_0193_D06.b : AACAAGTTCAAAAGAATGCTGAACCGGGAGCTGACACACCTCTCAGAAATGAGCCGTTCG
OVRM1_0026_E07.b : AACAAGTTCAAAAGAATGCTGAACCGGGAGCTGACACACCTCTCAGAAATGAGCCGTTCG
OVRM1_0170_C02.b : AACAAGTTCAAAAGAATGCTGAACCGGGAGCTGACACACCTCTCAGAAATGAGCCGTTCG
PBL01_0107_D12.b : AACAAGTTCAAAAGAATGCTGAACCGGGAGCTGACACACCTCTCAGAAATGAGCCGTTCG
20110601C-003635 : GGGAATCAGGTGTCTGAATACATTTCAAATACTTTCTTAGACAAGCAGAATGACGTGGAG
---------+---------+---------+---------+---------+---------+ 479
LVRM1_0151_G01.b : GGGAATCAGGTGTCTGAATACATTTCAAATACTTTCTTAGACAAGCAGAATGACGTGGAG
ITT01_0003_H02.b : GGGAATCAGGTGTCTGAATACATTTCAAATACTTTCTTAAACAAGCAGAATGACGTGGAG
LVRM1_0039_G05.b : GGGAATCAGGTGTCTGAATACATTTCAAATACTTTCTTAGACAAGCAGAATGACGTGGAG
PBL01_0038_C03.b : GGGAATCAGGTGTCTGAATACATTTCAAATACTTTCTTAGACAAGCAGAATGACGTGGAG
PBL01_0005_B01.b : GGGAATCAGGTGTCTGAATACATTTCAAATACTTTCTTAGACAAGCAGAATGACGTGGAG
LVRM1_0193_D06.b : GGGAATCAGGTGTCTGAATACATTTCAAATACTTTCTTAGACAAGCAGAATGACGTGGAG
OVRM1_0026_E07.b : GGGAATCACGTGTCTGAATACATTTCAAATACTTTCTTACACAAGCAGAATGACGTGGAG
OVRM1_0170_C02.b : GGGTATCAGGTGTCTGAATACATTTCAAATACTTTCTTAGACAAGCAGAATGACGTGGAG
PBL01_0107_D12.b : GGGAATCAGGTGTCTGAATACATTTCAAATACTTTCTTAGACAAGCAGAATGACGTGGAG
20110601C-003635 : ATTCCATCTCCTACCCAGAAAGACAGGGAGAAAAAGAAGAAGCAGCAGCTCATGACACAG
---------+---------+---------+---------+---------+---------+ 539
LVRM1_0151_G01.b : ATTCCATCTCCTACCCTGAAAGACAGGGAGAAAAAGAAGAAGCAGCAGCTCGTGACACAG
ITT01_0003_H02.b : ATTCCATCTCCTACCCAGAAAGACAGGGAGAAAAAGAAGAAGCAGCAGCTCATGACACAG
LVRM1_0039_G05.b : ATTCCATCTCCTACCCAGAAAGACAGGGAGAAAAAGAAGAAGCAGCAGCTCATGACACAG
PBL01_0038_C03.b : ATTCCATCTCCTACCCAGAAAGACAGGGAGAAAAAGAAGAAGCAGCAGCTCATGACACAG
PBL01_0005_B01.b : ATTCCATCTCCTACCCAGAAAGACAGGGAGAAAAAGAAGAAGCAGCAGCTCATGACACAG
LVRM1_0193_D06.b : ATTCCATCTCCTACCCAGAAAGACAGGGAGAAAAAGAAGAAGCAGCAGCTCATGACACAG
OVRM1_0026_E07.b : ATTCCATCTTCTACCCATACAGACAGGGAGACAAAGAAGAATCAGTAGTTCATGACACAG
OVRM1_0170_C02.b : ATTCCATCTCCTACCCAGAAAGACAGGGAGAAAAAGAAGAAGCAGCAGCTCATGACACAG
PBL01_0107_D12.b : ATTCCATCTCCTACCCAGAAAGACAGGGAGAAAAAGAAGAAGCAGCAGCTCATGACACAG
20110601C-003635 : ATAAGCGGAGTGAAAAAACTGATGCACAGTTCAAGCTTAAATAACACAAGCATTTCACGC
---------+---------+---------+---------+---------+---------+ 599
LVRM1_0151_G01.b : ATAAGCGGAGTGGAAAAACTGATGCACAGTTCAAGCTTAAATAACACAAGCATTTCACGC
ITT01_0003_H02.b : ATAAGCGGAGTGAAAAAACTGATGCACAGTTCAAGCTTAAATAACACAAGCATTTCACGC
LVRM1_0039_G05.b : ATAAGCGGAGTGAAAAAACTGATGCACAGTTCAAGCTTAAATAACACAAGCATTTCACGC
PBL01_0038_C03.b : ATAAGCGGAGTGAAAAAACTGATGCACAGTTCAAGCTTAAATAACACAAGCATTTCACGC
PBL01_0005_B01.b : ATAAGCGGAGTGAAAAAACTGATGCACAGTTCAAGCTTAAATAACACAAGCATTTCACGC
LVRM1_0193_D06.b : ATAACCGGAGTGAAAAAACTGATGCACAGTTCAAGCTTAAATAACACAAGCATTTCACGC
OVRM1_0026_E07.b : ACTAGCTGAGTGAAAAAACTGATGCACAGTTCAAGCTTAAATAACACAAGCATTTCCCGC
OVRM1_0170_C02.b : ATAAGCGGAGTGAAAAAACTGATGCACAGTTCAAGCTTAAATAACACAAGCATTTCACGC
PBL01_0107_D12.b : ATAAGCGGAGTGAAAAAACTGATGCACAGTTCAAGCTTAAATAACACAAGCATTTCACGC
20110601C-003635 : TTTGGAGTCAACACGGAAAATGAAGATCATCTGGCCAAGGAGCTGGAAGACCTGAACAAA
---------+---------+---------+---------+---------+---------+ 659
LVRM1_0151_G01.b : TTTGGAGTCAACACCGGAAATGAAGATCATCTGGGCCAGGAGCTGGAAGACCTGAACAAA
ITT01_0003_H02.b : TTTGGAGTCAACACGGAAAATGAAGATCATCTGGCCAAGGAGCTGGAAGACCTGAACAAA
LVRM1_0039_G05.b : TTTGGAGTCAACACGGAAAATGAAGATCATCTGGCCAAGGAGCTGGAAGACCTGAACAAA
PBL01_0038_C03.b : TTTGGAGTCAACACGGAAAATGAAGATCATCTGGCCAAGGAGCTGGAAGACCTGAACAAA
PBL01_0005_B01.b : TTTGGAGTCAACACGGAAAATGAAGATCATCTGGCCAAGGAGCTGGAAGACCTGAACAAA
LVRM1_0193_D06.b : TTTGGAGTCAACACGGAAAATGAAGATCATCTGGCCAAGGAGCTGGAAGACCTGAACAAA
OVRM1_0026_E07.b : TTTGGAGTCAACACGGAAAATGAAGACCATCTGGCCATCGCACTCGAACACCTGAACAAA
OVRM1_0170_C02.b : TTTGGAGTCAACACGGAAAATGAAGATCATCTGGCCAAGGAGCTGGAAGACCTGAACAAA
PBL01_0107_D12.b : TTTGGAGTCAACACGGAAAATGAAGATCATCTGGCCAAGGAGCTGGAAGACCTGAACAAA
20110601C-003635 : TGGGGCCTTAACATCTTCAATGTGGCTGGCTATTCACACAACAGGCCCTTGACATGCATC
---------+---------+---------+---------+---------+---------+ 719
LVRM1_0151_G01.b : TGGGGGCTTAACATCTTTCATGTGGCTGGCGTTTCACACAACAAGGCCTTGACATGCATC
ITT01_0003_H02.b : TGGGGCCTTAACATCTTCAATGTGGCTGGCTATTCACACAACAGGCCCTTGACGTGCATC
LVRM1_0039_G05.b : TGGGGCCTTAACATCTTCAATGTGGCTGGCTATTCACACAACAGGCCCTTGACATGCATC
PBL01_0038_C03.b : TGGGGCCTTAACATCTTCAATGTGGCTGGCTATTCACACAACAGGCCCTTGACATGCATC
PBL01_0005_B01.b : TGGGGCCTTAACATCTTCAATGTGGCTGGCTATTCACACAACAGGCCCTTGACATGCATC
LVRM1_0193_D06.b : TGGGGCCCTTACATCTTCAATGTGGCTGGCTATTCACACAACAGGCCCTTGACATGCATC
OVRM1_0026_E07.b : TGGGGCCTctaccctatccatgtcgctggttattcacacatcagcgctacgacagcatct
OVRM1_0170_C02.b : TGGGGCCTTAACATCTTCAATGTGGCTGGCTATTCACACAACAGGCCCTTGACATGCATC
PBL01_0107_D12.b : TGGGGCCTTAACATCTTCAATGTGGCTGGCTATTCACACAACAGGCCCTTGACATGCATC
20110601C-003635 : ATGTACGCCATCTTCCAGGAAAGAGACCTCCTAAAGACATTCAAAATCTCCTCGGACACG
---------+---------+---------+---------+---------+---------+ 779
LVRM1_0151_G01.b : ATGTATGCCATCTTCCCGGGAAGAGACCTCTTAAAa
ITT01_0003_H02.b : ATGTACGCCATCTTCCAGGAAAGAGACCTCCTAAAGACATTCAAAATCTCCTCGGACACG
LVRM1_0039_G05.b : ATGTATGCCATCTTCCAGGAAAGAGACCTCCTAAAGACA*TCAAAATCTCCTCGGACACG
PBL01_0038_C03.b : ATGTACGCCATCTTCCAGGAAAGAGACCTCCTAAAGACATTCAAAATCTCCTCGGACACG
PBL01_0005_B01.b : ATGTATGCCATCTTCCAngtgaggaaacaggagccaatgtttgttcccccacgtggatgc
LVRM1_0193_D06.b : ATGTATGCCATCTTCCAGGAAAGAGACCCTCCTAAGACATTCAAAATCTCCTCGGACACG
OVRM1_0026_E07.b : tgcttgcaatccttcaaacaagaccctcgcatagacactcatatctccttagacacgctt
OVRM1_0170_C02.b : ATGTATGCCATCTTCCAGGAAAGAGACCTCCTAAAGACATTCAAAATCTCCTCGGACACG
PBL01_0107_D12.b : ATGTACGCCATCTTCCAGGAAAGAGACCTCCTAAAGACATTCAAAATCTCCTCGGACACG
20110601C-003635 : CTTGTTACCTACATGATGACGTTAGAAGACCATTACCATTCCGACGTGGCCTATCATAAC
---------+---------+---------+---------+---------+---------+ 839
LVRM1_0151_G01.b :
ITT01_0003_H02.b : CTTGTTACCTACATGATGACGTTAGAAGACCATTACCATTCCGACGTGGCCTATCATAAC
LVRM1_0039_G05.b : CTTGTTACCTACATGATGACGTTAGGAGACCATTACCATTCCG
PBL01_0038_C03.b : CTTGTTACCTACATGATGACGTTAGAAGACCATTACCATTCCGACGTGGCCTATCATAAC
PBL01_0005_B01.b : acccgaagattttttttccacccccgttcctattctgaatgcgcttgtcctccttttggg
LVRM1_0193_D06.b : CTTGTTACCTACATGATGACGTTAGAAGACCATTACCATTCCGACGTGG
OVRM1_0026_E07.b : gtacttacctgaaacaccccagcccagtttcttgcgacagatccatcaataacctgcccg
OVRM1_0170_C02.b : CTTGTTACCTACATGATGACGTGAGAAGACCATTACCATTCCGACGTGGCCTATCATAAC
PBL01_0107_D12.b : CTTGTTACCTACATGATGACGTTAGAAGACCATTACCATTCCGACGTGGCCTATCATAAC
20110601C-003635 : AGCCTGCACGCTGCCGACGTGGCCCAGTCAACCCATGTTCTTCTTTCCACGCCAGCGTTA
---------+---------+---------+---------+---------+---------+ 899
LVRM1_0151_G01.b :
ITT01_0003_H02.b : AGCCTGCACGCTGCCGACGTGGCCCAGTCAACCCATGTTCTTCTTTCAACG*CAGCATTA
LVRM1_0039_G05.b :
PBL01_0038_C03.b : AGCCTGCACGCTGCCGACGTGGCCCAGTCAACCCATGTTCTTCTTTNCACGCCAGCGTTA
PBL01_0005_B01.b : ggcctgccctgattccttttccaaatccaagttgcggcccaggaaaagaaacctccctaa
LVRM1_0193_D06.b :
OVRM1_0026_E07.b : cgttacgtcgcaataact
OVRM1_0170_C02.b : AGCCTGCA
PBL01_0107_D12.b : AGCCTGCACGCTGCCGACGTGGCCCAGTCAACCCATGTTCTTCTTTCCACGCCAGCGTTA
20110601C-003635 : GATGTGAGTAGTTATGATCCGTTTTGCCTACCTGCCCTTCCTCTTTTAAA*GTACCATGC
---------+---------+---------+---------+---------+---------+ 958
LVRM1_0151_G01.b :
ITT01_0003_H02.b : GATGTGAGTAGTTATGATCCGTTTTGCCTACCTGCCTTTCCTCTTTTAAA*GTACCATGC
LVRM1_0039_G05.b :
PBL01_0038_C03.b : GATGTGAGTAGTTATGATCCGTTTTGCCCTACTGCCCTTCCTCTTTTAAA*GTACCATGC
PBL01_0005_B01.b : aaaaattctaaaacctcctcggaaaccccttgtttcactacctggaggactttaagaaaa
LVRM1_0193_D06.b :
OVRM1_0026_E07.b :
OVRM1_0170_C02.b :
PBL01_0107_D12.b : GATGTGAGTAGTTATGATCCGTTTTGCCTACCTGCCCTTCCTCTTTTAAAAGTACCATGC
20110601C-003635 : AGGAGTTCCCGTCGCGGCACAGTGGTTAACGAATCCNACTAGGAACCATGANGTGGTGGG
---------+---------+---------+---------+---------+---------+ 1018
LVRM1_0151_G01.b :
ITT01_0003_H02.b : Aggagttcccgtcgcggcacagtggtttacaaatccagctaggaacatgaggtggcgggg
LVRM1_0039_G05.b :
PBL01_0038_C03.b : Aggagttcccgtcgtggcacagtggttaacgatccnactangaaccatgaggtggtgggg
PBL01_0005_B01.b : ccatttccctttccaaacggggcctataaataaaaacctggcagctttcccaaatgggcc
LVRM1_0193_D06.b :
OVRM1_0026_E07.b :
OVRM1_0170_C02.b :
PBL01_0107_D12.b : ANgagttcccgtcgtggcacagtggttaacgaatccnactaggaaccatgangtggtggg
20110601C-003635 : TTCGGTCCCTGGCCTTGCTCAGTGGGTTAAGGATCTG.......................
---------+---------+---------+---------+---------+---------+ 1055
LVRM1_0151_G01.b :
ITT01_0003_H02.b : tcggtccctgcctcgctcantgggtaangatctggcnntgccatgactgtaggtgtagtc
LVRM1_0039_G05.b :
PBL01_0038_C03.b : tcggtccctggcttgctcaatgggttaagatctgccctgccatganctgtgtgtaagtcc
PBL01_0005_B01.b : ccatcaaaccattgtttttcttttcccccccccccttaaaagggggggaaattagaaacc
LVRM1_0193_D06.b :
OVRM1_0026_E07.b :
OVRM1_0170_C02.b :
PBL01_0107_D12.b : ttcggtccctggccttgctcagtgggttaaggatctgggcttgccatgagctgtggtgta
20110601C-003635 : ............................................................
---------+---------+---------+---------+---------+---------+ 1055
LVRM1_0151_G01.b :
ITT01_0003_H02.b : gcaaatgtgcctcaagtccgtgttgctggggctctggtataagcggtggctaagctctga
LVRM1_0039_G05.b :
PBL01_0038_C03.b : caaagtggctcaggcccgtgttgcttggctctgtaaagctgtggctacgccttgattaac
PBL01_0005_B01.b : cctttggcccaccccccccccccctctttaaaaaaccaagggcaggatttcctcccccgg
LVRM1_0193_D06.b :
OVRM1_0026_E07.b :
OVRM1_0170_C02.b :
PBL01_0107_D12.b : agtcgcaaatgtggctcangtcccgtgttgctgtggctctgggtatagctggtggctaca
20110601C-003635 : ............................................................
---------+---------+---------+---------+---------+---------+ 1055
LVRM1_0151_G01.b :
ITT01_0003_H02.b : ttcaaccctagcctgggaaactcctatgccgaaggagcggcctttaaagggcaaagccca
LVRM1_0039_G05.b :
PBL01_0038_C03.b : cccaaccgggaactccaatgcccaggaaccgcctaaaaaggcaaagacaaaaaaaaaaaa
PBL01_0005_B01.b : gccctggggttaacaaaaccccccaggaaccccaagggggggggggttcggccccccgcc
LVRM1_0193_D06.b :
OVRM1_0026_E07.b :
OVRM1_0170_C02.b :
PBL01_0107_D12.b : gctctgatttcacccctagcctggggaactccatatgccccagggaaccgccctagaaaa
20110601C-003635 : ............................................................
---------+---------+---------+---------+---------+---------+ 1055
LVRM1_0151_G01.b :
ITT01_0003_H02.b : aaaaaaaaaaaaaaaggccatttggctcaaattcagtccgggccccttaatatcccggag
LVRM1_0039_G05.b :
PBL01_0038_C03.b : aagggccatgtttcactaggtccggcgcctaaattcctccagggaagtttactaccgttt
PBL01_0005_B01.b : ctctccaccggggaaaaaaatcgggcttttccaaaacctggggggaaagacaaaacaggg
LVRM1_0193_D06.b :
OVRM1_0026_E07.b :
OVRM1_0170_C02.b :
PBL01_0107_D12.b : ggcnaaggaccaaaaaaaaaaaaaaaagccccatgtgctccagctgcaagtcccggcccc
20110601C-003635 : ............................................................
---------+---------+---------+---------+---------+---------+ 1055
LVRM1_0151_G01.b :
ITT01_0003_H02.b : gcccaaattaaacacccctttttgttaaaagggccataagggagaattaaaacaggcagg
LVRM1_0039_G05.b :
PBL01_0038_C03.b : ttggaaaggtcttaaggatcaataaaaagccggccctttaaactcgacgaaatgcattgg
PBL01_0005_B01.b : cccagggcccctggttgtgggggcccgggtaagaccgggggtgtaaacccaatttacccc
LVRM1_0193_D06.b :
OVRM1_0026_E07.b :
OVRM1_0170_C02.b :
PBL01_0107_D12.b : tcttaataacctctcaggggcccaaacttagccataccaacttttttgtgaaaaaggggt
20110601C-003635 : ............................................................
---------+---------+---------+---------+---------+---------+ 1055
LVRM1_0151_G01.b :
ITT01_0003_H02.b : cccct
LVRM1_0039_G05.b :
PBL01_0038_C03.b : atttgaaactttctgtggcattgaaaccccaattactcgaaaaattgggaaggaaccccc
PBL01_0005_B01.b : caccgggggaacaccctaagcccgaggagaggctctcaaaggggaaaacacaaaaaaaaa
LVRM1_0193_D06.b :
OVRM1_0026_E07.b :
OVRM1_0170_C02.b :
PBL01_0107_D12.b : cttaaaggaggcccaatttaacctaggcctgggccccgtttataacactctgacgggaaa
20110601C-003635 : ............................................................
---------+---------+---------+---------+---------+---------+ 1055
LVRM1_0151_G01.b :
ITT01_0003_H02.b :
LVRM1_0039_G05.b :
PBL01_0038_C03.b : ccggcggatttcaaattaataacgcgaaagtgtttttaccagtcccccccgttaccccgg
PBL01_0005_B01.b : aaaaagccgtttgtttgcttgctgtgcgcgccccttaaaattcc
LVRM1_0193_D06.b :
OVRM1_0026_E07.b :
OVRM1_0170_C02.b :
PBL01_0107_D12.b : actgccacctgggatttttggaagaacccttttt
20110601C-003635 : ............................................................
---------+---------+---------+---------+---------+---------+ 1055
LVRM1_0151_G01.b :
ITT01_0003_H02.b :
LVRM1_0039_G05.b :
PBL01_0038_C03.b : ggttacccccaaaagttgttgaaaaattttttttttggggctgt
PBL01_0005_B01.b :
LVRM1_0193_D06.b :
OVRM1_0026_E07.b :
OVRM1_0170_C02.b :
PBL01_0107_D12.b :