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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004050

Length: 1,445

Sequence [FASTA format sequence]
CAGAGCTCGC GAGGCCGCGA GCTGGCAGGC TGTGTGGGTG CAGAGTCCTG GGCCAGCTCA
GACCTTCAGA CACGCTTCTG ACTGGAAGCA CCGCCTCGGG GTTTCAGAAG CCATGGGCGT
CCAGGAAGTA GAAACGAAGA CAGCAGTTTT CTTTCCCGGC GCTGGAGTCT GAGACGTCTG
TCCGGGGACT CGGGGACACC AGGTCCTGCA GCGCCGCCAG GGCCCCGGGT GGCATGGAGC
TGCCTGGCCC AGAAGGGGAG AAGCAGGCGT CTGCGGAGCC CCGGCCGGGT GGCAGGCTGC
CGTCCTGGTG GTGCCTGGTC TTCTTCCTCT GCTTCTACGG CTTCCTGGCC CAGATGCGGC
CCGGGGAGAG CTTCATCACG CCCTACCTCC TAGGCCCCGA CAAGAACTTC ACGCAGAAGC
AGGTGCCATC ACTTCCTTTT CTGCCGGCTT CGTGAAGATC CGCTGGGCGC TGTGGGCGAA
GCTGGTCATC GCCGTGGTGA CGGCCGTGCA GGCGGGGCTC GTCTTCCTCA TGTACAGCAC
GAGCAGCATC TGGCTGTGCT ACGGCGCCTT CGTGCTCTTC CGCGGCGCCT ACCAGTTCCT
GGTGCCCATC GCCACGTTCC AGATCGCGTC CTCTCTTTCT CAAGAGCTGC GGGCCCTGGT
CTTCGGAGTC AACACCTTCC TCGCCACCGT GCTGAAGACC GTCATTACTG TCATCGTCTC
CGACAAGCGG GGCCTGGGCC TCCCGGTCCC CTCTCAGTTC CTCATCTACT CCGTGTACTT
CCTGGTGCTC TTTGTCGCCT ACTTCTTCGC AGCTGTGCTG GCGGGCCTGC GCCACTTCCG
ACAGGGCCGC CACCAGCCCC TGGCGCTGGC CCAGGAGCTG AGGAGTCCCG CGCACGAGAA
GGCTGGGCAG GCGCTGAGCG CACAGGCCGG GGCCCCGGGG GACGGTGCCA GGGCCTCCCG
GGAGCGCTGC CAGCTGCCCG AGACCAGAGC CTGACCCACC CGGCCTGCTG TCCTGCCCGC
TGAGCGGCCA GATTCCTGAC GCCAGAGCCT CCTGGGCCTT GACCTCTGGG CACTGATGCG
TCCCTGCAGC TGCCTCTCCT CTTGGGGTCA GCAGGCCATG CTGTGGCATC GTCCGAATTC
CAGCCTTCAG TTGCAGTACC GGTGACCCAG GGGTCCCTAA TGGTCCGTCC CCGTGACCCC
CACCCCAGCG AGGGGTCCTT GGCCTGTCCC ATGTGGCCCC GAACGCGGCA CCCTCGGCCT
GCTTCACGCC CTGGCGGGGG CGCTTCCTCA TGCCCACAGG CCTTTGTCCT CACCCCCAGG
GAGGCAGGTC CCACTTGTCC CCAGGTGGTC CCAGATGCCA GCCAGGGAAC TGGCCCCCCT
CAGCTGTCCT GGGCCCCTGC GGGCGGGAGT GGGACCCCAA GTCCTGGGGC CCCGCGGCTA
AACTG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLC19A1folate transporter 1 isoform 1 [Homo sapiens]. 2041e-52
Contig/Assembly ProteinSLC19A1folate transporter 1 isoform 3 [Homo sapiens]. 2041e-52
Contig/Assembly ProteinSLC19A1folate transporter 1 isoform 2 [Homo sapiens]. 1742e-43
Contig/Assembly ProteinSLC19A3thiamine transporter 2 [Homo sapiens]. 1304e-30
Contig/Assembly ProteinSLC19A2thiamine transporter 1 [Homo sapiens]. 1242e-28


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSlc19a1folate transporter 1 [Mus musculus]. 1996e-51
Contig/Assembly ProteinSlc19a1folate transporter 1 [Mus musculus]. 1996e-51
Contig/Assembly ProteinSlc19a3thiamine transporter 2 [Mus musculus]. 1281e-29
Contig/Assembly ProteinSlc19a2thiamine transporter 1 [Mus musculus]. 1227e-28


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC491606PREDICTED: similar to Folate transporter 1 (Solute carrier family 19, member 1) (Placental folate transporter) (FOLT) (Reduced folate carrier protein) (RFC) (Intestinal folate carrier) (IFC-1) [Canis familiaris]. 2151e-55
Contig/Assembly ProteinLOC486150PREDICTED: similar to solute carrier family 19, member 3 [Canis familiaris]. 1343e-31
Contig/Assembly ProteinLOC486151PREDICTED: similar to solute carrier family 19, member 3 [Canis familiaris]. 1302e-30
Contig/Assembly ProteinLOC490353PREDICTED: similar to Thiamine transporter 1 (THTR-1) (ThTr1) (Thiamine carrier 1) (TC1) (Solute carrier family 19, member 2) isoform 2 [Canis familiaris]. 1235e-28
Contig/Assembly ProteinLOC490353PREDICTED: similar to Thiamine transporter 1 (THTR-1) (ThTr1) (Thiamine carrier 1) (TC1) (Solute carrier family 19, member 2) isoform 1 [Canis familiaris]. 1235e-28


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLC19A1folate transporter 1 [Bos taurus]. 2372e-62
Contig/Assembly ProteinSLC19A3thiamine transporter 2 [Bos taurus]. 1312e-30
Contig/Assembly ProteinSLC19A2thiamine transporter 1 [Bos taurus]. 1234e-28
Contig/Assembly ProteinSLC19A2PREDICTED: feline leukemia virus subgroup A receptor-like [Bos taurus]. 1234e-28


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLC19A1PREDICTED: folate transporter 1 [Sus scrofa]. 3271e-89
Contig/Assembly ProteinLOC100513826PREDICTED: thiamine transporter 2-like [Sus scrofa]. 1326e-31
Contig/Assembly ProteinLOC100155620feline leukemia virus subgroup A receptor [Sus scrofa]. 1272e-29


Assembly Members: 7      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
OVR010010C06OVR01_0010_C06.bBP142329 
OVRM10218H08OVRM1_0218_H08.bBP461974 AK236705
PBL010012H02PBL01_0012_H02.bBW969299 
PCT010009B04PCT01_0009_B04.bFS695217 
SPL010062F05SPL01_0062_F05.bCJ018615 AK237569
TES010072D03TES01_0072_D03.bCJ034646 
TES010104A02TES01_0104_A02.bCJ036818 

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
936C300.600WNCCG/P
T200.400CTG/L


Alignment:      TOP

20110601C-004050 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
SPL01_0062_F05.b : nttggcttggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0218_H08.b :
PBL01_0012_H02.b :
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b :
TES01_0104_A02.b :
20110601C-004050 : ....................CAGAGCTCGCGAGGCCGCGAGCTGGCAGGCTGTGTGGGTG
---------+---------+---------+---------+---------+---------+ 40
SPL01_0062_F05.b : xxxxxxxxxxxxxxxxxxxxCAGAGCTCGCGAGGCCGCGAGCTGGCAGGCTGTGTGGGTG
OVRM1_0218_H08.b : ncagtgtcxxxxxxxxxxxxxx
PBL01_0012_H02.b :
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b :
TES01_0104_A02.b :
20110601C-004050 : CAGAGTCCTGGGCCAGCTCAGACCTTCAGACACGCTTCTGACTGGAAGCACCGCCTCGGG
---------+---------+---------+---------+---------+---------+ 100
SPL01_0062_F05.b : CAGAGTCCTGGGCCAGCTCAGACCTTCAGACACGCTTCTGACTGGAAGCACCGCCTCGGG
OVRM1_0218_H08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxcagagctcgggaggccgcgag
PBL01_0012_H02.b :
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b :
TES01_0104_A02.b :
20110601C-004050 : GTTTCAGAAGCCATGGGCGTCCAGGAAGTAGAAACGAAGACAGCAGTTTTCTTTCCCGGC
---------+---------+---------+---------+---------+---------+ 160
SPL01_0062_F05.b : GTTTCAGAAGCCATGGGCGTCCAGGAAGTAGAAACGAAGACAGCAGTTTTCTTTCCCGGC
OVRM1_0218_H08.b : ctggCAGAAGCCATGGGCGTCCAGGAAGTAGAAACGAAGACAGCAGTTTTCTTTCCCGGC
PBL01_0012_H02.b :
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b :
TES01_0104_A02.b :
20110601C-004050 : GCTGGAGTCTGAGACGTCTGTCCGGGGACTCGGGGACACCAGGTCCTGCAGCGCCGCCAG
---------+---------+---------+---------+---------+---------+ 220
SPL01_0062_F05.b : GCTGGAGTCTGAGACGTCTGTCCGGGGACTCGGGGACACCAGGTCCTGCAGCGCCGCCAG
OVRM1_0218_H08.b : GCTGGAGTCTGAGACGTCTGTCCGGGGACTCGGGGACACCAGGTCCCGCAGCGCCGCCAG
PBL01_0012_H02.b :
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b :
TES01_0104_A02.b :
20110601C-004050 : GGCCCCGGGTGGCATGGAGCTGCCTGGCCCAGAAGGGGAGAAGCAGGCGTCTGCGGAGCC
---------+---------+---------+---------+---------+---------+ 280
SPL01_0062_F05.b : GGCCCCGGGTGGCATGGAGCTGCCTGGCCCAGAAGGGGAGAAGCAGGCGTCTGCGGAGCC
OVRM1_0218_H08.b : GGCCCCGGGTGGCATGGAGCTGCCTGGCCCAGAAGGGGAGAAGCAGGCGTCTGCGGAGCC
PBL01_0012_H02.b : aaaggtgacaca
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b :
TES01_0104_A02.b :
20110601C-004050 : CCGGCCGGGTGGCAGGCTGCCGTCCTGGTGGTGCCTGGTCTTCTTCCTCTGCTTCTACGG
---------+---------+---------+---------+---------+---------+ 340
SPL01_0062_F05.b : CCGGCCGGGTGGCAGGCTGCCGTCCTGGTGGTGCCTGGTCTTCTTCCTCTGCTTCTACGG
OVRM1_0218_H08.b : CCGGCCGGGTGGCAGGCTGCCGTCCTGGTGGTGCCTGGTCTTCTTCCTCTGCTTCTACGG
PBL01_0012_H02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTCCTCTGCTTCTACCG
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b :
TES01_0104_A02.b :
20110601C-004050 : CTTCCTGGCCCAGATGCGGCCCGGGGAGAGCTTCATCACGCCCTACCTCCTAGGCCCCGA
---------+---------+---------+---------+---------+---------+ 400
SPL01_0062_F05.b : CTTCCTGGCCCAGATGCGGCCCGGGGAGAGCTTCATCACGCCCTACCTCCTAGGCCCCGA
OVRM1_0218_H08.b : CTTCCTGGCCCAGATGCGGCCCGGGGAGAGCTTCATCACGCCCTACCTCCTAGGCCCCGA
PBL01_0012_H02.b : CTTCCTGGCCCAGATGCGGCCCGGGGAGAGCTTCATCACGCCCTACCTCCTAGGCCCCGA
TES01_0072_D03.b :
OVR01_0010_C06.b : cgaaxxxxxxxxxxxxxx
PCT01_0009_B04.b :
TES01_0104_A02.b :
20110601C-004050 : CAAGAACTTCACGCAGAAGCAGGTGCCATCACTTCCTTTTCTGCCGGCTTCGTGAAGATC
---------+---------+---------+---------+---------+---------+ 460
SPL01_0062_F05.b : CAAGAACTTCACGCAGAAGCAGGTGCCATCACTTCCTTTTCTGCCGGCTTCGTGAAGATC
OVRM1_0218_H08.b : CAAGAACTTCACGCAGAAGCAGGTGCCATCACTTCCTTTTCTGCCGGCTTCGTGAAGATC
PBL01_0012_H02.b : CAAGAACTTCACGCAGAAGCAGGTGCCATCACTTCCTTTTCTGCCGGCTTCGTGAAGATC
TES01_0072_D03.b : ttccgctgtggctatgACTTCCTTTTCTGCCGGCTTCGTGAAGATC
OVR01_0010_C06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PCT01_0009_B04.b :
TES01_0104_A02.b :
20110601C-004050 : CGCTGGGCGCTGTGGGCGAAGCTGGTCATCGCCGTGGTGACGGCCGTGCAGGCGGGGCTC
---------+---------+---------+---------+---------+---------+ 520
SPL01_0062_F05.b : CGCTGGGCGCTGTGGGCGAAGCTGGTCATCGCCGTGGTGACGGCCGTGCAGGCGGGGCTC
OVRM1_0218_H08.b : CGCTGGGCGCTGTGGGCGAAGCTGGTCATCGCCGTGGTGACGGCCGTGCAGGCGGGGCTC
PBL01_0012_H02.b : CGCTGGGCGCTGTGGGCGAAGCTGGTCATCGCCGTGGTGACGGCCGTGCAGGCGGGGCTC
TES01_0072_D03.b : CGCTGGGCGCTGTGGGCGAAGCTGGTCATCGCCGTGGTGACGGCCGTGCAGGCGGGGCTC
OVR01_0010_C06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxTCGCCGTGGTGACGGCCGTGCAGGCGGGGCTC
PCT01_0009_B04.b : ttttttcccga
TES01_0104_A02.b :
20110601C-004050 : GTCTTCCTCATGTACAGCACGAGCAGCATCTGGCTGTGCTACGGCGCCTTCGTGCTCTTC
---------+---------+---------+---------+---------+---------+ 580
SPL01_0062_F05.b : GTCTTCCTCATGTACAGCACGAGCAGCATCTGGCTGTGCTACGGCGCCTTCGTGCTCTTC
OVRM1_0218_H08.b : GTCTTCCTCATGTACAGCACGAGCAGCATCTGGCTGTGCTACGGCGCCTTCGTGCTCTTC
PBL01_0012_H02.b : GTCTTCCTCATGTACAGCACGAGCAGCATCTGGCTGTGCTACGGCGCCTTCGTGCTCTTC
TES01_0072_D03.b : GTCTTCCTCATGTACAGCACGAGCAGCATCTGGCTGTGCTACGGCGCCTTCGTGCTCTTC
OVR01_0010_C06.b : GTCTTCCTCATGTACAGCACGAGCAGCATCTGGCTGCGCTACGGCGCCTTCGTGCTCTTC
PCT01_0009_B04.b : ggtggctcggcagtacGCACGAGCAGCATCTGGCTGTGCTACGGCGCCTTCGTGCTCTTC
TES01_0104_A02.b :
20110601C-004050 : CGCGGCGCCTACCAGTTCCTGGTGCCCATCGCCACGTTCCAGATCGCGTCCTCTCTTTCT
---------+---------+---------+---------+---------+---------+ 640
SPL01_0062_F05.b : CGCGGCGCCTACCAGTTCCTGGTGCCCATCGCCACGTTCCAGATCGCGTCCTCTCTTTCT
OVRM1_0218_H08.b : CGCGGCGCCTACCAGTTCCTGGTGCCCATCGCCACGTTCCAGATCGCGTCCTCTCTTTCT
PBL01_0012_H02.b : CGCGGCGCCTACCAGTTCCTGGTGCCCATCGCCACGTTCCAGATCGCGTCCTCTCTTTCT
TES01_0072_D03.b : CGCGGCGCCTACCAGTTCCTGGTGCCCATCGCCACGTTCCAGATCGCGTCCTCTCTTTCT
OVR01_0010_C06.b : CGCGGCGCCTACCAGTTCCTGGTGCCCATCGCCACGTTCCAGATCGCGTCCTCTCTTTCT
PCT01_0009_B04.b : CGCGGTGCCTACCAGTTCCTGGTGCCCATCGCCACGTTCCAGATCGCGTCCTCTCTTTCT
TES01_0104_A02.b : nnnnnttcacgttgctatgaatgcgtCTCTCTTTCT
20110601C-004050 : CAAGAGCTGCGGGCCCTGGTCTTCGGAGTCAACACCTTCCTCGCCACCGTGCTGAAGACC
---------+---------+---------+---------+---------+---------+ 700
SPL01_0062_F05.b : CAAGAGCTGCGGGCCCTGGTCTTCGGAGTCAACACCTTCCTCGCCACCGTGCTGAAGACC
OVRM1_0218_H08.b : CAAGAGCTGCGGGCCCTGGTCTTCGGAGTCAACACCTTCCTCGCCACCGTGCTGAAGACC
PBL01_0012_H02.b : CAAGAGCTGCGGGCCCTGGTCTTCGGAGTCAACACCTTCCTCGCCACCGTGCTGAAGACC
TES01_0072_D03.b : CAAGAGCTGCGGGTCCTGGTCTTCGGAGTCAACACCTTCCTCGCCACCGTGCTGAAGACC
OVR01_0010_C06.b : CAAGAGCTGCGGGCCCTGGTCTTCGGAGTCAACACCTTCCTCGCCACCGTGCTGAAGACC
PCT01_0009_B04.b : CAAGAGCTGCGGGCCCTGGTCTTCGGAGTCAACACCTTCCTCGCCACCGTGCTGAAGACC
TES01_0104_A02.b : CAAGAGCTGCGGGCCCTGGTCTTCGGAGTCAACACCTTCCTCGCCACCGTGCTGAAGACC
20110601C-004050 : GTCATTACTGTCATCGTCTCCGACAAGCGGGGCCTGGGCCTCCCGGTCCCCTCTCAGTTC
---------+---------+---------+---------+---------+---------+ 760
SPL01_0062_F05.b : GTCATTACTGTCATCGTCTCCGACAAGCGGGGCCTGGGCCTCCCGGTCCCCTCTCAGTTC
OVRM1_0218_H08.b : GTCATTACTGTCATCGTCTCCGACAAGCGGGGCCTGGGCCTCCCGGTCCCCTCTCAGTTC
PBL01_0012_H02.b : GTCATTACTGTCATCGTCTCCGACAAGCGGGGCCTGGGCCTCCCGGTCCCCTCTCAGTTC
TES01_0072_D03.b : GTCATTACTGTCATCGTCTCCGACAAGCGGGGCCTGGGCCTCCCGGTCCCCTCTCAGTTC
OVR01_0010_C06.b : GTCATTACTGTCATCGTCTCCGACAAGCGGGGCCTGGGCCTCCCGGTCCCCTCTCAGTTC
PCT01_0009_B04.b : GTCATTACTGTCATCGTCTCCGACAAGCGGGGCCTGGGCCTCCCGGTCCCCTCTCAGTTC
TES01_0104_A02.b : GTCATTACTGTCATCGTCTCCGACAAGCGGGGCCTGGGCCTCCCGGTCCCCTCTCAGTTC
20110601C-004050 : CTCATCTACTCCGTGTACTTCCTGGTGCTCTTTGTCGCCTACTTCTTCGCAGCTGTGCTG
---------+---------+---------+---------+---------+---------+ 820
SPL01_0062_F05.b : CTCATCTACTCCGTGTACTTTCTGGTGCTCTTTGTCGCCTACTTCTTCGCAGCTGTGCTG
OVRM1_0218_H08.b : CTCATCTACTCCGTGTACTTCCTGGTGCTCTTTGTCGCCTACTTCTTCGCAGCTGTGCTG
PBL01_0012_H02.b : CTCATCTACTCCGTGTACCTCCTGGTGCTCTTTGTCGCCTACTTCTTCGCAGCTGTGCTG
TES01_0072_D03.b : CTCATCTACTCCGTGTACTTCCTGGTGCTCTTTGTCGCCTACTTCTTCGCAGCTGTGCTG
OVR01_0010_C06.b : CTCATCTACTCCGTGTACTTCCTGGTGCTCTTTGTCGCCTACTTCTTCGCAGCTGTGCTG
PCT01_0009_B04.b : CTCATCTACTCCGTGTACTTCCTGGTGCTCTTTGTCGCCTACTTCTTCGCAGCTGTGCTG
TES01_0104_A02.b : CTCATCTACTCCGTGTACTTCCTGGTGCTCTTTGTCGCCTACTTCTTCGCAGCTGTGCTG
20110601C-004050 : G*CGGGCCTGCGCCACTTCCGACA*GGGCCGCCACCAGCCCCTGGCGCTGGCCCAGGAGC
---------+---------+---------+---------+---------+---------+ 878
SPL01_0062_F05.b : GGCGGGCCTGCGCCACTTCCGACAGGGGCCGCCACCAGCCCCTGGgcgctggcccaagag
OVRM1_0218_H08.b : G*CGGGACTGCGGCCCTTCCGACAGGtgcan
PBL01_0012_H02.b : G*CGGGCCTGCGCCACTTCCGACA*GGGCCGCCACCAGCCCCTGGCGCTGGCCCAGGAGC
TES01_0072_D03.b : G*CGGGCCTGCGCCACTTCCGACA*GGGCCGCCACCAGCCCCTGGCGCTGGCCCAGGAGC
OVR01_0010_C06.b : G*CGGGCCTGCGCCACTTCCGACA*GGGCCGCCACCAGCCCCTGGCGCTGGCCCAGGAGC
PCT01_0009_B04.b : G*CGGGCCTGCGCCACTTCCGACA*GGGCCGCCACCAGCCCCTGGCGCTGGCCCAGGAGC
TES01_0104_A02.b : G*CGGGCCTGCGCCACTTCCGACA*GGGCCGCCACCAGCCCCTGGCGCTGGCCCAGGAGC
20110601C-004050 : TGAGGAGTCCCGCGCACGAGAAGGCTGGGCAGGCGCTGAGCGCACAGGCCGGGGCCCCGG
---------+---------+---------+---------+---------+---------+ 938
SPL01_0062_F05.b : ctgagggattccgcgcacgaaaaagctggggcagggcctgaacccaaaggccgggggccc
OVRM1_0218_H08.b :
PBL01_0012_H02.b : TGAGGAGTCCCGCGCACGAGAAGGCTGGGCAGGCGCTGAGCGCACAGGCCGGGGCCCCGG
TES01_0072_D03.b : TGAGGAGTCCCGCGCACGAGAAGGCTGGGCAGGCGCTGAGCGCACAGGCCGGGGCCCTGG
OVR01_0010_C06.b : TGAGGAGTCCCGCGCACGAGAAGGCTGGGCAGGCGCTGAGCGCACAGGCCGGGGCCCCGG
PCT01_0009_B04.b : TGAGGAGTCCCGCGCACGAGAAGGCTGGGCAGGCGCTGAGCGCACAGGCCGGGGCCCCGG
TES01_0104_A02.b : TGAGGAGTCCCGCGCACGAGAAGGCTGGGCAGGCGCTGAGCGCACAGGCCGGGGCCCTGG
20110601C-004050 : GGGACGGTGCCAGGGCCTCCCGGGAGCGCTGCCAGCTGCCCGAGACCAGAGCCTGACCCA
---------+---------+---------+---------+---------+---------+ 998
SPL01_0062_F05.b : cggggggacgggggcccgggccctcccgggagcgcttgccagcttggccgaaaaaccaaa
OVRM1_0218_H08.b :
PBL01_0012_H02.b : GGGACGGTGCCAGGGCCTCCCGGGAGCGCTGCCAGCTGCCCGAGACCAGAGCCTGACCCA
TES01_0072_D03.b : GGGACGGTGCCAGGGCCTCCCGGGAGCGCTGCCAGCTGCCCGAGACCAGAGCCTGACCCA
OVR01_0010_C06.b : GGGACGGTGCCAGGGCCTCCCGGGAGCACTGCCAGCTGCCCGAGACCAGAGCCTGACCCA
PCT01_0009_B04.b : GGAACGGTGCCAGGGCCTCCCGGGAGCGCTGCCAGCTGCCCGAGACCAGAGCCTGACCCA
TES01_0104_A02.b : GGGACGGTGCCAGGGCCTCCCGGGAGCGCTGCCAGCTGCCCGAGACCAGAGCCTGACCCA
20110601C-004050 : CCCGGCCTGCTGTCCTGCCCGCTGAGCGGCCAGATTCCTGACGCCAGAGCCTCCTGGGCC
---------+---------+---------+---------+---------+---------+ 1058
SPL01_0062_F05.b : ccttgaccccacccggcctggttttcctgtcccccttaaacggccaaaatttcctgaacc
OVRM1_0218_H08.b :
PBL01_0012_H02.b : CCCGGCCTGCTGTCCTGCCCGCTGAGCGGCCAGATTCCTGACGTCAGAGCCTCCTGGGCC
TES01_0072_D03.b : CCCGGCCTGCTGTCCTGCCCGCTGAGCGGCCAGATTCCTGACGCCAGAGCCTCCTGGGCC
OVR01_0010_C06.b : CCCGGCCTGCTGTCCTGCCCGCTGAGCGGCCAGATTCCTGACGCCAGAGCCTCCTGGGCC
PCT01_0009_B04.b : CCCGGCCTGCTGTCCTGCCCACTGGGCGGCCAGATTCCTGACGCCAGAGCCTCCTGGGCC
TES01_0104_A02.b : CCCGGCCTGCTGTCCTGCCCGCTGAGCGGCCAGATTCCTGACGCCAGAGCCTCCTGGGCC
20110601C-004050 : TTGACCTCTGGGCACTGATGCGTCCCTGCAGCTGCCTCTCCTCTTGGGGTCAGCAGGCCA
---------+---------+---------+---------+---------+---------+ 1118
SPL01_0062_F05.b : c
OVRM1_0218_H08.b :
PBL01_0012_H02.b : TTGACCTCTGGGCACTGATGCGTCCCTGCAGCTGCCTCTCCTCTTGGGGTCAGCAGGCCA
TES01_0072_D03.b : TTGACCTCTGGGCACTGATGCGTCCCTGCAGCTGCCTCTCCTCTTGGGGTCAGCAGGCCA
OVR01_0010_C06.b : TTGACCTCTGGGCACTGATGCGTCCCTGCAGCTGCCTCTCCTCTTGGGGTCAGCAGGCCA
PCT01_0009_B04.b : TTGACCTCTGGGCACTGATGCGTCCCTGCAGCTGCCTCTCCTCTTGGGGTCAGCAGGCCA
TES01_0104_A02.b : TTGACCTCTGGGCACTGATGCGTCCCTGCAGCTGCCTCTCCTCTTGGGGTCAGCAGGCCA
20110601C-004050 : TGCTGTGGCATCGTCCGAATTCCAGCCTTCAGTTGCAGTACCGGTGACCC*AGGGGTCCC
---------+---------+---------+---------+---------+---------+ 1177
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b : TGCTGTGGCATCGTCCGAATTC*AGCCCTCAGTTGCAGTACCGGTGACCCCANGGGTCCC
TES01_0072_D03.b : TGCTGTGGCATCGTCCGAATTC*CCGCCTTCGTTGCAGTAACGGGGACCC*AGGGGTCCC
OVR01_0010_C06.b : TGCTGTGGCATCGTCCGAATTCCAGCCTTCAGTTGCAGTACCGGTGACCC*AGGGGTCCC
PCT01_0009_B04.b : TGCTGTGGCATCGTCCGAATTCCAGCCTTCAGTTGCAGTACCGGTGACCC*AGGGGTCCC
TES01_0104_A02.b : TGCTGTGGCATCGTCCGAATTCCAGCCTTCAGTTGCAGTACCGGTGACCC*AGGGGTCCC
20110601C-004050 : TAATGGTCCGTCCCCGTGACCCCCACCCCAGCGAGGGGTCCTTGGCCTGTCCCATGTGGC
---------+---------+---------+---------+---------+---------+ 1237
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b : TAATGGTCCGTCCCCGTG*ACCCCACCCCAGCGAGGGGGTCTTGGCCCTGTCCATGTGGC
TES01_0072_D03.b : TAATGGTCCGTCCCCATGAACCCCACCCCACCAAGGGGTCCTTGGCCTGTCCCCTGTGGC
OVR01_0010_C06.b : TAATGGTCCGTCCCCGTGACCCCCACCCCAGCGAGGGGTCCTTGGCCTGTCCCATGTGGC
PCT01_0009_B04.b : TAATGGCCCGTCCCCGTGACCCCCACCCCAGCGAGGGGTCCTTGGCCTGTCCCGTGTGGC
TES01_0104_A02.b : TAATGGTCCGTCCCCATGACCCCCACCCCAGCGAGGGGTCCTTGGCCTGTCCCATGTGGC
20110601C-004050 : CCCGAACGCGGCACCCTCGGCCTGCTTCACGCCCTGGCGGGGGCGCTTCCTCATGCCCAC
---------+---------+---------+---------+---------+---------+ 1297
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b : CCCGAACGCGGCACCCTCGcctgcttcnngccctggcgggggcgcttcttctgcccacag
TES01_0072_D03.b : CCCGAAAGCGGGACCCTTGGCCGGCTTTACGCCCTGGGGGGGGggcttcctcctggccca
OVR01_0010_C06.b : CCCGAACACGGCACCCTCGGCCTGCTTCACGCCCTGGCGGGGGCGCTTCCTCATGCCCAC
PCT01_0009_B04.b : CCCGAACACGGCACCCTCGGCCTGCTTCACGCCGTGGCGGGGGCGCTCCCTCATTGCCAC
TES01_0104_A02.b : CCCGAACGCGGCACCCTCGGCCTGCTTCACGCCCTGGCGGGGGCGCTTCCTCATGCCCAC
20110601C-004050 : AGGCCTTTGTCCTCACCCCCAGGGAGGCAGGTCCCACTTGTCCCCAGGTGGTCCCAGATG
---------+---------+---------+---------+---------+---------+ 1357
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b : gctttgtcctcccccccaggaggcggtcccactgttccccggtgtcccaaaggcacccag
TES01_0072_D03.b : aggcctttgtccttcccccccaggaaggaaggcccccttttcccccagggggccccaaat
OVR01_0010_C06.b : AGGCCTTTGTCCTCACCCCCAGGGAGGCAGGTCCCACTTGTCCCCAGGTGGTCCCAGATG
PCT01_0009_B04.b : AGGCCTTTGTCtcacccccaaggaaggcagtcccacttgtccccaggtgttccagaatgc
TES01_0104_A02.b : AGGCCTTTGTCCTCAC*CCCAGGGAGGCAGGTCCCACTTGTCCCCANGTGGTCCCAGATG
20110601C-004050 : CCAGCCAGGG*AACTGGCCCCCCTCAGCTGTCCTGGGCCCCTGCGGGCGGGAGTGGGACC
---------+---------+---------+---------+---------+---------+ 1416
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b : gaaatggccccctaatcgtccgggcccgcgggggggatgggaaccaggtcctgggccccc
TES01_0072_D03.b : cccgtccggggaaatgggccccctccaattgttccttgggccctgggggggggagtggga
OVR01_0010_C06.b : CCAGCCAGGG*AACTGGCCCCCCTCAGCTGTCCTGGGCCCtgcggggggggagtgggagc
PCT01_0009_B04.b : agccagggaactggcccccacagctgttctgggcctgtggccggaattggaaacaaggtc
TES01_0104_A02.b : CCAGCCAGGGAAACTGGCCCCCCTCAGCTGTCCTGNGCCCCTGCGGGCGGGAGTGGGACC
20110601C-004050 : CCAAGTCCTGGGGCCCCGCGGCTAAACTG...............................
---------+---------+---------+---------+---------+---------+ 1445
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b : cgcaaactgggaatttgaaatgttcggggcggcttttaagaaccccggtccttttttaaa
TES01_0072_D03.b : accaaggttccgggggcccccgcgcaaacgtgggacttttgatattgtcgggggcttgca
OVR01_0010_C06.b : caagggtctggggcccgcggctaaactgtgacatttggaaattgttcaggtgctttgcat
PCT01_0009_B04.b : ctggggcccgggcctaactgggacatttgtattggtcaagggcttgctttttaaagagct
TES01_0104_A02.b : CCAAGTCCTGGGGCCCCGCGGCTAAACTGtgacatttgtaaatgttcaggtgcttggcat
20110601C-004050 : ............................................................
---------+---------+---------+---------+---------+---------+ 1445
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b : aaaaaaaaaaaaaccctccctccgaagctggcgatgaaaaaaa
TES01_0072_D03.b : tttaaaagaggcccgttccctttttaaaaacaaaaaacactgtcctcctccccctatatt
OVR01_0010_C06.b : tttaaatgatgctctgttccttttttaaaaaaaaaaaaaacccaaacaaaaacaccaaca
PCT01_0009_B04.b : ccgttccttttaaaaaaaaaaaaaaaaaaaggcccatgtgcttcacttcaggtccggccc
TES01_0104_A02.b : tttaatgatgctctgtttctttttaaaaaacaaaaccaaacaaaaccacnaccacccacg
20110601C-004050 : ............................................................
---------+---------+---------+---------+---------+---------+ 1445
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b :
TES01_0072_D03.b : ggggccaataaaaaaaaaaaaaaaagggccctttttttctatttcggggtcggccctaaa
OVR01_0010_C06.b : gaaaagctgggccaaaaggaaaaaaaaaaaaaaaaaaaaaaaaaagggcccccttgggcc
PCT01_0009_B04.b : ctaaataatttaaaaaaaacctcccacccctccccggaacgaaaaaaaaagaaggaattg
TES01_0104_A02.b : aaagctggcccagatgaaaaaaaaaaaaaaaaaaggcxxxxxxxxxxxxxxxxxxxxxxx
20110601C-004050 : ............................................................
---------+---------+---------+---------+---------+---------+ 1445
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b :
TES01_0072_D03.b : atttataaaaaaacccctccccccccccccaacgaaaaaaaaaaagggcaaggggtgtca
OVR01_0010_C06.b : tcaaagcttggaagggtccccgggccccccctcttaaaaaaaattccccccccgaggggg
PCT01_0009_B04.b : tgttttaactttttattgccctaaagggtcaaaataagcaacctccaatttcccaaaaac
TES01_0104_A02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-004050 : ............................................................
---------+---------+---------+---------+---------+---------+ 1445
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b :
TES01_0072_D03.b : actttttggcgccctatgaggtaaaaaaacacactcctcattcttaaaaaaatttttttt
OVR01_0010_C06.b : ggccccccaagcccttttacccccccccaatcacccccccccttttttttttc
PCT01_0009_B04.b : ctttttcccgcctccattgggttgcccacccccaagtttttaaggggggacccggaacca
TES01_0104_A02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-004050 : ............................................................
---------+---------+---------+---------+---------+---------+ 1445
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b :
TES01_0072_D03.b : ccccttggtgggggcgccaccaatatattttatg
OVR01_0010_C06.b :
PCT01_0009_B04.b : accaaaatacctttccttccccaaaaaaacggcccgggttgggggggaggtttttcttaa
TES01_0104_A02.b : xxxxxxxxxxxxxxxxxxxxxxxcctgccatccaattgggggtggccaaacccccaagga
20110601C-004050 : ............................................................
---------+---------+---------+---------+---------+---------+ 1445
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b :
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b : gggtaatgtctccaaaggggaacgaaaaattgtaaaggcacagcgaacaaaaggcttggt
TES01_0104_A02.b : tctatatgtcgaatcccgggaccaacccaaataattccctccctccccccaaaaaacccg
20110601C-004050 : ............................................................
---------+---------+---------+---------+---------+---------+ 1445
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b :
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b : tttttacccccccgataaaatacctagggagaccaaaaaaaacatccacaccccctttcc
TES01_0104_A02.b : cccccggggtttgggggggagggtttttctcttaagggggaatggtttccccaacagg
20110601C-004050 : ............................................................
---------+---------+---------+---------+---------+---------+ 1445
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b :
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b : cgcaaagactctctggagttctcataattgggtgtgggggccctctctttatttttttta
TES01_0104_A02.b :
20110601C-004050 : ............................................................
---------+---------+---------+---------+---------+---------+ 1445
SPL01_0062_F05.b :
OVRM1_0218_H08.b :
PBL01_0012_H02.b :
TES01_0072_D03.b :
OVR01_0010_C06.b :
PCT01_0009_B04.b : tttt
TES01_0104_A02.b :