[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-004082
Length:
514
Sequence:
[FASTA format sequence]
GCGGGTTGGT TGGCGGAGGC CGGGCTTGTG GGGCCCCCGG AGTTGGGGTT CTGTTCCCGG
CCGCGAGATT TCTGACCAGG ATTGTTAAAA TGAGTCTGCG GAAGCAAACA CCCAGTGACT
TCCTAAAGCA AATCATTGGA CGACCAGTAG TGGTAAAATT AAATTCTGGA GTGGATTATC
GAGGGGTCCT GGCGTGCCTG GACGGCTACA TGAACATAGC CTTGGAACAG ACGGAGGAGT
ATGTAAACGG ACAGCTGAAG AACAAGTACG GGGACGCATT TATCCGAGGA AACAATGTGT
TGTACATAAG TACCCAGAAG AGGAGGATGT AAAGTCACCA AGAGTACAAT ACTTTTCGTA
CTGGGATATA TTTTTTTATT AAGTTTTTTG ATTCTTTTGT CATGTAATTT GTCCTATTTT
GTAACAGTTG TGATTTTTCA CTGACATGTG AATAAGATAA ATATATACAA TTGTGGATTT
AAAAAAAAAG TGTTCTTTCA TATTCAAAAA AAAA
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | LSM6 | U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]. | 162 | 1e-40 | O |
|
| SNRPF | small nuclear ribonucleoprotein F [Homo sapiens]. | 75.1 | 3e-14 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| Lsm6 | U6 snRNA-associated Sm-like protein LSm6 [Mus musculus]. | 162 | 1e-40 | O |
|
| Lsm6 | U6 snRNA-associated Sm-like protein LSm6 [Mus musculus]. | 162 | 1e-40 | O |
|
| Snrpf | small nuclear ribonucleoprotein F [Mus musculus]. | 75.1 | 3e-14 | O |
|
| Gm6616 | PREDICTED: small nuclear ribonucleoprotein F [Mus musculus]. | 62.8 | 1e-10 | O |
|
| Gm6616 | PREDICTED: small nuclear ribonucleoprotein F [Mus musculus]. | 62.8 | 1e-10 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC612329 | PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6 [Canis familiaris]. | 180 | 5e-46 | |
|
| LOC482609 | PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Canis familiaris]. | 76.6 | 1e-14 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LSM6 | U6 snRNA-associated Sm-like protein LSm6 [Bos taurus]. | 162 | 1e-40 | O |
|
| LOC784698 | PREDICTED: Sm protein F-like [Bos taurus]. | 152 | 2e-37 | O |
|
| LOC784698 | PREDICTED: Sm protein F [Bos taurus]. | 152 | 2e-37 | O |
|
| SNRPF | small nuclear ribonucleoprotein F [Bos taurus]. | 75.1 | 3e-14 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC100522884 | PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Sus scrofa]. | 162 | 9e-41 | O |
|
| SNRPF | small nuclear ribonucleoprotein polypeptide F [Sus scrofa]. | 75.1 | 2e-14 | O |
|
| LOC100523078 | PREDICTED: hypothetical protein LOC100523078 [Sus scrofa]. | 60.8 | 4e-10 |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
ILNT1_0075_D07.b : nnaaggacggtacgag
ILNT1_0081_C07.b : nnnnggcagtagac
BMWN1_0066_G10.b : nttttggatggtacga
MLN01_0006_H01.b : nnnngggtttnntttnnccttgtacttgacagtttgtcxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0068_C12.b : tttttagatggtacgaggxxxxxxx
20110601C-004082 : ...........................................GCGGGTTGGTTGGCGGA
---------+---------+---------+---------+---------+---------+ 17
ILNT1_0075_D07.b : gxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCGGGTTGGTTGGCGGA
ILNT1_0081_C07.b : gcagtagtattaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgCGGGTTGGTTGGCGGA
BMWN1_0066_G10.b : cgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtcatataGGA
MLN01_0006_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgttgcggttttgccgggttggttggcgga
BMWN1_0068_C12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgggttttgccgggttggttggcgga
20110601C-004082 : GGCCGGGCTTGTGGGGCCCCCGGAGTTGGGGTTCTGTTCCCGGCCGCGAGATTTCTGACC
---------+---------+---------+---------+---------+---------+ 77
ILNT1_0075_D07.b : GGCCGGGCTTGTGGGGCCCCCGGAGTTGGGGTTCTGTTCCCGGCCGCGAGATTTCTGACC
ILNT1_0081_C07.b : GGCCGGGCTTGTGGGGCCCCCGGAGTTGGGGTTCTGTTCCCGGCCGCGAGATTTCTGACC
BMWN1_0066_G10.b : GGCCGGGCTTGTGGGGTCCCCGGAGTTGGGGTCCCTTTCACGGCCGCGAGATTTCTGACC
MLN01_0006_H01.b : ggccgggcttgtggggtccccggagttggggttctgttcccggccgcgagATTTCTGACC
BMWN1_0068_C12.b : ggccgggcttgtggggtccccggagttggggttctgttcccggccgcgagATTTCTGACC
20110601C-004082 : AGGATTGTTAAAATGAGTCTGCGGAAGCAAACACCCAGTGACTTCCTAAAGCAAATCATT
---------+---------+---------+---------+---------+---------+ 137
ILNT1_0075_D07.b : AGGATTGTTAAAATGAGTCTGCGGAAGCAAACACCCAGTGACTTCCTAAAGCAAATCATT
ILNT1_0081_C07.b : AGGATTGTTAAAATGAGTCTGCGGAAGCAAACACCCAGTGACTTCCTAAAGCAAATCATT
BMWN1_0066_G10.b : AGGATTGTTAAAATGAGTCTGCGGAAGCAAACACCCAGTGACTTCCTAAAGCAAATCATT
MLN01_0006_H01.b : AGGATTGTTAAAATGAGTCTGCGGAAGCAAACACCCAGTGACTTCCTAAAGCAAATCATT
BMWN1_0068_C12.b : AGGATTGTTAAAATGAGTCTGCGGAAGCAAACACCCAGTGACTTCCTAAAGCAAATCATT
20110601C-004082 : GGACGACCAGTAGTGGTAAAATTAAATTCTGGAGTGGATTATCGAGGGGTCCTGGCGTGC
---------+---------+---------+---------+---------+---------+ 197
ILNT1_0075_D07.b : GGACGACCAGTAGTGGTAAAATTAAATTCTGGAGTGGATTATCGAGGGGTCCTGGCGTGC
ILNT1_0081_C07.b : GGACGACCAGTAGTGGTAAAATTAAATTCTGGAGTGGATTATCGAGGGGTCCTGGCGTGC
BMWN1_0066_G10.b : GGACGACCAGTAGTGGTAAAATTAAATTCTGGAGTGGATTATCGAGGGGTCCTGGCGTGC
MLN01_0006_H01.b : GGACGACCAGTAGTGGTAAAATTAAATTCTGGAGTGGATTATCGAGGGGTCCTGGCGTGC
BMWN1_0068_C12.b : GGACGACCAGTAGTGGTAAAATTAAATTCTGGAGTGGATTATCGAGGGGTCCTGGCGTGC
20110601C-004082 : CTGGACGGCTACATGAACATAGCCTTGGAACAGACGGAGGAGTATGTAAACGGACAGCTG
---------+---------+---------+---------+---------+---------+ 257
ILNT1_0075_D07.b : CTGGACGGCTACATGAACATAGCCTTGGAACAGACGGAGGAGTATGTAAACGGACAGCTG
ILNT1_0081_C07.b : CTGGACGGCTACATGAACATAGCCTTGGAACAGACGGAGGAGTATGTAAACGGACAGCTG
BMWN1_0066_G10.b : CTGGACGGCTACATGAACATAGCCTTGGAACAGACGGAGGAGTATGTTAACGGACAGCTG
MLN01_0006_H01.b : CTGGACGGCTACATGAACATAGCCTTGGAACAGACGGAGGAGTATGTAAACGGACAGCTG
BMWN1_0068_C12.b : CTGGACGGCTACATGAACATAGCCTTGGAACAGACGGAGGAGTATGTTAACGGACAGCTG
20110601C-004082 : AAGAACAAGTACGGGGACGCATTTATCCGAGGAAACAATGTGTTGTACATAAGTACCCAG
---------+---------+---------+---------+---------+---------+ 317
ILNT1_0075_D07.b : AAGAACAAGTACGGGGACGCATTTATCCGAGGAAACAATGTGTTGTACATAAGTACCCAG
ILNT1_0081_C07.b : AAGAACAAGTACGGGGACGCATTTATCCGAGGAAACAATGTGTTGTACATAAGTACCCAG
BMWN1_0066_G10.b : AAGAACAAGTACGGGGACGCATTTATCCGAGGAAACAATGTGTTGTACATAAGTACCCAG
MLN01_0006_H01.b : AAGAACAAGTACGGGGACGCATTTATCCGAGGAAACAATGTGTTGTACATAAGTACCCAG
BMWN1_0068_C12.b : AAGAACAAGTACGGGGACGCATTTATCCGAGGAAACAATGTGTTGTACATAAGTACCCAG
20110601C-004082 : AAGAGGAGGATGTAAAGTCACCAAGAGTACAATACTTTTCGTACTGGGATATATTTTTTT
---------+---------+---------+---------+---------+---------+ 377
ILNT1_0075_D07.b : AAGAGGAGGATGTAAAGTCACCAAGAGTACAATACTTTTCGTACTGGGATATATTTTTTT
ILNT1_0081_C07.b : AAGAGGAGGATGTAAAGTCACCAAGAGTACAATACTTTTCGTACTGGGATATATTTTTTT
BMWN1_0066_G10.b : AAGAGGAGGATGTAAAGTCACCAAGAGTACAATACTTTTCGTACTGGGATATATTTTTTT
MLN01_0006_H01.b : AAGAGGAGGATGTAAAGTCACCAAGAGTACAATACTTTTCGTACTGGGATATATTTTTTT
BMWN1_0068_C12.b : AAGAGGAGGATGTAAAGTCACCAAGAGTACAATACTTTTCGTACTGGGATATATTTTTTT
20110601C-004082 : ATTAAGTTTTTTGATTCTTTTGTCATGTAATTTGTCCTATTTTGTAACAGTTGTGATTTT
---------+---------+---------+---------+---------+---------+ 437
ILNT1_0075_D07.b : ATTAAGTTTTTTGATTCTTTTGTCATGTAATTTGTCCTATTTTGTAACAGTTGTGATTTT
ILNT1_0081_C07.b : ATTAAGTTTTTTGATTCTTTTGTCATGTAATTTGTCCTATTTTGTAACAGTTGTGATTTT
BMWN1_0066_G10.b : ATTAAGTTTTTTGATTCTTTTGTCATGTAATTTGTCCTATTTTGTAACAGTTGTGATTTT
MLN01_0006_H01.b : ATTAAGTTTTTTGATTCTTTTGTCATGTAATTTGTCCTATTTTGTAACAGTTGTGATTTT
BMWN1_0068_C12.b : ATTAAGTTTTTTGATTCTTTTGTCATGTAATTTGTCCTATTTTGTAACAGTTGTGATTTT
20110601C-004082 : TCACTGACATGTGAATAAGATAAATATATACAATTGTGGATTTAAAAAAAAAGTGTTCTT
---------+---------+---------+---------+---------+---------+ 497
ILNT1_0075_D07.b : TCACTGACATGTGAATAAGATAAATATATACAATTGTGGATTTAAAAAAAAAAa
ILNT1_0081_C07.b : TCACTGACATGTGAATAAGATAAATATATACAATTGTGGATTTAAaaaaaaaa
BMWN1_0066_G10.b : TCACTGACATGTGAATAAGATAAATATATACAATTGTGGATTTAA
MLN01_0006_H01.b : TCACTGACATGTGAATAAGATAAATATATACAATTGTGGAaaaaaaaaaaaaaaaaaxxx
BMWN1_0068_C12.b : TCACTGACATGTGAATAAGATAAATATATACAATTGTGGATTTAACTGTAAAGTGTTCTT
20110601C-004082 : TCATATTCAAAAAAAAA...........................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0068_C12.b : TCATATTCAAAAAAAAAaa
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : xxxcctatagggttcaataaaccatcctcccaatttccaataacatttttccgcatcaat
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : tggtttgccacccccagtactacagtgggtaacccttagaaacccaccccggaaaagttt
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : cttttttgtaataaaaagcccatcctccattccccaaggaaaaccctcgctaaacggtgt
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : gttataagaaatagcaacccttttttttccttgtccntaggttttgattgcccataagta
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : gcaatnnntnnnncccccnnnnnnnnnnnnggacctatggtactgttcatcnnnnnnnnn
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
BMWN1_0068_C12.b :
20110601C-004082 : ............................................................
---------+---------+---------+---------+---------+---------+ 514
ILNT1_0075_D07.b :
ILNT1_0081_C07.b :
BMWN1_0066_G10.b :
MLN01_0006_H01.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
BMWN1_0068_C12.b :
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