Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-004215

Sequence: [FASTA format sequence] GGAAGTTGTG CGTCATGGAG GAGTAACGTG AGCTTATCCC CCTCTGCTGT CTCGAGGTAA GGCAGTTGTT GGCCTACCTC CTCCGCTACC CTGCTGGCCG GATTGAAAGC CGTGGATGTG GGCCTCAGAA TAATGACGCG GGTATGCTGG TTGGTGAGAC AGGACAGCCG GCACCAGCGT ATCAAGCTTC CACATTTGGA AGCAGTCATT GTTGGGCGAG GCCCAGAGAC CAAGATCACT GACAAGAAGT GCTCTCGACA GCAAGTGCAA TTGAAAGCAG AATGTAACAA AGGATATGTC AAGGTAAAGC AGGTAGGGGT CAATCCCACC AGCATTGACT CAGTCATAAT TGGTAAGGAC CAAGAGATGA AGCTGCAGCC TGGCCAGGTT CTCCACATGG TGAATGAACT TTATCCATAT GTTATAGAGT TTGAGGAAGA GGCAAAGAGC CCTGGCCTGA AAACACACAG GAAGAGAAAG AGGTCAGGCA ACAGTGATTC TGTAGAAAGG GATGCTTCTC AGGAAGCTAA GCCCAGTACA GGAGCAGAAC CTGGGAGCAA CCCTAGCCAG TGCTCTGTGC CCGCAAAGAA GGAAAAGGAT GCAGCCACCA AAAAGGAATC ATTGAGCCAC TGGAGTCAAG GCTTGAAGAT TTCCATGGAG GACCCCAAAA TGCAGGTTTA CAAAGATGAC CAGGTGGTGG TGATTAAGGA TAAATACCCC AAGGCTCGTT ACCACTGGCT GGTCTTACCA TGGGCCTCCA TTTCCAGTCT GAAGGCTGTT ACCAGAGAAC ACCTTGAGCT CCTCAGACAC ATGCACACTG TGGGGGAAAA GGTGATTGCA GACTTTGCTG GCTCCAGCAA ACTCCGCTTC CGATTGGGCT ACCACGCCAT TCCTAGCATG AGTCACGTAC ACCTTCATGT GATCAGCCAG GACTTTGATT CTCCTTGCCC TAAAAACAAA AAGCATTGGA AT

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
APTX aprataxin isoform b [Homo sapiens]. 512 e-145 O

APTX aprataxin isoform e [Homo sapiens]. 512 e-145 O

APTX aprataxin isoform a [Homo sapiens]. 509 e-144 O

APTX aprataxin isoform a [Homo sapiens]. 509 e-144 O

APTX aprataxin isoform g [Homo sapiens]. 509 e-144 O

APTX aprataxin isoform f [Homo sapiens]. 347 1e-95 O

APTX aprataxin isoform h [Homo sapiens]. 343 1e-94 O

APTX aprataxin isoform i [Homo sapiens]. 261 7e-70 O

PNKP bifunctional polynucleotide phosphatase/kinase [Homo sapiens]. 71.6 1e-12 O

HINT3 histidine triad nucleotide-binding protein 3 [Homo sapiens]. 56.2 4e-08 O

Locus	Definition	Score	E value	FL
APTX	aprataxin isoform b [Homo sapiens].	512	e-145	O
APTX	aprataxin isoform e [Homo sapiens].	512	e-145	O
APTX	aprataxin isoform a [Homo sapiens].	509	e-144	O
APTX	aprataxin isoform a [Homo sapiens].	509	e-144	O
APTX	aprataxin isoform g [Homo sapiens].	509	e-144	O
APTX	aprataxin isoform f [Homo sapiens].	347	1e-95	O
APTX	aprataxin isoform h [Homo sapiens].	343	1e-94	O
APTX	aprataxin isoform i [Homo sapiens].	261	7e-70	O
PNKP	bifunctional polynucleotide phosphatase/kinase [Homo sapiens].	71.6	1e-12	O
HINT3	histidine triad nucleotide-binding protein 3 [Homo sapiens].	56.2	4e-08	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Aptx aprataxin isoform a [Mus musculus]. 449 e-126 O

Aptx aprataxin isoform b [Mus musculus]. 449 e-126 O

Pnkp bifunctional polynucleotide phosphatase/kinase [Mus musculus]. 72.8 4e-13 O

Hint3 histidine triad nucleotide-binding protein 3 [Mus musculus]. 60.8 1e-09 O

Hint1 histidine triad nucleotide-binding protein 1 [Mus musculus]. 50.1 3e-06 O

Locus	Definition	Score	E value	FL
Aptx	aprataxin isoform a [Mus musculus].	449	e-126	O
Aptx	aprataxin isoform b [Mus musculus].	449	e-126	O
Pnkp	bifunctional polynucleotide phosphatase/kinase [Mus musculus].	72.8	4e-13	O
Hint3	histidine triad nucleotide-binding protein 3 [Mus musculus].	60.8	1e-09	O
Hint1	histidine triad nucleotide-binding protein 1 [Mus musculus].	50.1	3e-06	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
APTX aprataxin [Canis lupus familiaris]. 504 e-143 O

LOC484373 PREDICTED: similar to polynucleotide kinase 3-phosphatase isoform 1 [Canis familiaris]. 72.4 6e-13 O

LOC484373 PREDICTED: similar to polynucleotide kinase 3-phosphatase isoform 2 [Canis familiaris]. 72.4 6e-13 O

LOC476284 PREDICTED: similar to histidine triad nucleotide binding protein 3 [Canis familiaris]. 54.3 2e-07 O

LOC474667 PREDICTED: similar to histidine triad nucleotide binding protein 1 [Canis familiaris]. 52.4 7e-07 O

LOC608763 PREDICTED: similar to histidine triad nucleotide binding protein 1 [Canis familiaris]. 50.4 2e-06 O

Locus	Definition	Score	E value	FL
APTX	aprataxin [Canis lupus familiaris].	504	e-143	O
LOC484373	PREDICTED: similar to polynucleotide kinase 3-phosphatase isoform 1 [Canis familiaris].	72.4	6e-13	O
LOC484373	PREDICTED: similar to polynucleotide kinase 3-phosphatase isoform 2 [Canis familiaris].	72.4	6e-13	O
LOC476284	PREDICTED: similar to histidine triad nucleotide binding protein 3 [Canis familiaris].	54.3	2e-07	O
LOC474667	PREDICTED: similar to histidine triad nucleotide binding protein 1 [Canis familiaris].	52.4	7e-07	O
LOC608763	PREDICTED: similar to histidine triad nucleotide binding protein 1 [Canis familiaris].	50.4	2e-06	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
APTX aprataxin [Bos taurus]. 503 e-142 O

PNKP bifunctional polynucleotide phosphatase/kinase [Bos taurus]. 72.4 6e-13 O

HINT1 histidine triad nucleotide-binding protein 1 [Bos taurus]. 55.1 9e-08 O

HINT1 PREDICTED: histidine triad nucleotide binding protein 1-like [Bos taurus]. 55.1 9e-08 O

HINT1 PREDICTED: histidine triad nucleotide binding protein 1 [Bos taurus]. 55.1 9e-08 O

HINT3 histidine triad nucleotide-binding protein 3 [Bos taurus]. 54.3 2e-07 O

LOC100335621 PREDICTED: histidine triad nucleotide-binding protein 1-like [Bos taurus]. 50.1 3e-06 O

LOC100335621 PREDICTED: histidine triad nucleotide-binding protein 1-like [Bos taurus]. 50.1 3e-06 O

Locus	Definition	Score	E value	FL
APTX	aprataxin [Bos taurus].	503	e-142	O
PNKP	bifunctional polynucleotide phosphatase/kinase [Bos taurus].	72.4	6e-13	O
HINT1	histidine triad nucleotide-binding protein 1 [Bos taurus].	55.1	9e-08	O
HINT1	PREDICTED: histidine triad nucleotide binding protein 1-like [Bos taurus].	55.1	9e-08	O
HINT1	PREDICTED: histidine triad nucleotide binding protein 1 [Bos taurus].	55.1	9e-08	O
HINT3	histidine triad nucleotide-binding protein 3 [Bos taurus].	54.3	2e-07	O
LOC100335621	PREDICTED: histidine triad nucleotide-binding protein 1-like [Bos taurus].	50.1	3e-06	O
LOC100335621	PREDICTED: histidine triad nucleotide-binding protein 1-like [Bos taurus].	50.1	3e-06	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
APTX aprataxin [Sus scrofa]. 552 e-157 O

PNKP PREDICTED: bifunctional polynucleotide phosphatase/kinase [Sus scrofa]. 71.2 8e-13 O

LOC100518898 PREDICTED: histidine triad nucleotide-binding protein 1-like [Sus scrofa]. 55.5 4e-08 O

LOC100158022 PREDICTED: histidine triad nucleotide-binding protein 3 [Sus scrofa]. 50.1 2e-06 O

Locus	Definition	Score	E value	FL
APTX	aprataxin [Sus scrofa].	552	e-157	O
PNKP	PREDICTED: bifunctional polynucleotide phosphatase/kinase [Sus scrofa].	71.2	8e-13	O
LOC100518898	PREDICTED: histidine triad nucleotide-binding protein 1-like [Sus scrofa].	55.5	4e-08	O
LOC100158022	PREDICTED: histidine triad nucleotide-binding protein 3 [Sus scrofa].	50.1	2e-06	O

Assembly Members: 6 TOP

Library Plate Loc. Read Name Accession Full Seq.

BMWN1 0074 H06 BMWN1_0074_H06.b HX210129
CLNT1 0001 C02 CLNT1_0001_C02.b FS657108
CLNT1 0108 D10 CLNT1_0108_D10.b HX219775
ITT01 0063 E06 ITT01_0063_E06.b BW981609
LNG01 0013 B12 LNG01_0013_B12.b BP434890
OVR01 0042 B03 OVR01_0042_B03.b BP141793 AK234308

SNPs: 4 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
40 C 3 0 0.600 W N CCC/P
G 2 0 0.400 GCC/A
88 A 3 0 0.600 W N ACC/T
G 2 0 0.400 GCC/A
91 C 3 0 0.600 W S CTG/L
T 2 0 0.400 TTG/L
583 C 3 0 0.500 W N CCA/P
G 3 0 0.500 GCA/A

Alignment: TOP

20110601C-004215 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVR01_0042_B03.b : aaggctxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0001_C02.b :                       nggatacgttagctgtcgxxxxxxxxxxxxxxxxxxxx
CLNT1_0108_D10.b :                         nnnnccgtcagctgaggxxxxxxxxxxxxxxxxxxx
ITT01_0063_E06.b :                                 nnnnggtgcaacaxxxxxxxxxxxxxxx
LNG01_0013_B12.b :           catttggtgccnxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0074_H06.b :                                                             


20110601C-004215 : ...........................GGAAGTTGTGCGTCATGGAGGAGTAACGTGAGC
                   ---------+---------+---------+---------+---------+---------+ 33
OVR01_0042_B03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxGGAAGTTGTGCGTCATGGAGGAGTAACGTGAGC
CLNT1_0001_C02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGCGTCATGGAGGAGTAACGTGAGC
CLNT1_0108_D10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGCGTCATGGAGGAGTAACGTGAGC
ITT01_0063_E06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgttGTGCGTCATGGAGGAGTAACGTGAGC
LNG01_0013_B12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGCGTCATGGAGGAGTAACGTGAGC
BMWN1_0074_H06.b :                                        ttttggatagtacgaggxxxx


20110601C-004215 : TTATCCCCCTCTGCTGTCTCGAGGTAAGGCAGTTGTTGGCCTACCTCCTCCGCTACCCTG
                   ---------+---------+---------+---------+---------+---------+ 93
OVR01_0042_B03.b : TTATCCCCCTCTGCTGTCTCGAGGTAAGGCAGTTGTTGGCCTACCTCCTCCGCCACCTTG
CLNT1_0001_C02.b : TTATCCGCCTCTGCTGTCTCGAGGTAAGGCAGTTGTTGGCCTACCTCCTCCGCTGCCCTG
CLNT1_0108_D10.b : TTATCCGCCTCTGCTGTCTCGAGGTAAGGCAGTTGTTGGCCTACCTCCTCCGCTGCCCTG
ITT01_0063_E06.b : TTATCCCCCTCTGCTGTCTCGAGGTAAGGCAGTTGTTGGCCTACCTCCTCCGCTACCTTG
LNG01_0013_B12.b : TTATCCCCCTCTGCTGTCTCGAGGTAAGGCAGTTGTTGGCCTACCTCCTCCGCTACCCTG
BMWN1_0074_H06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgggaagttgtgcgtcatggagg


20110601C-004215 : CTGGCCGGATTGAAAGCCGTGGATGTGGGCCTCAGAATAATGACGCGGGTATGCTGGTTG
                   ---------+---------+---------+---------+---------+---------+ 153
OVR01_0042_B03.b : CTGGCCGGATTGAAAGCCGTGGATGTGGGCCTCAGAATAATGACGCGGGTATGCTGGTTG
CLNT1_0001_C02.b : CTGGCCGGATTGAAAGCCGTGGATGTGGGCCTCAGAATAATGACGCGGGTATGCTGGTTG
CLNT1_0108_D10.b : CTGGCCGGATTGAAAGCCGTGGATGTGGGCCTCAGAATAATGACGCGGGTATGCTGGTTG
ITT01_0063_E06.b : CTGGCCGGATTGAAAGCCGTGGATGTGGGCCTCAGAATAATGACGCGGGTATGCTGGTTG
LNG01_0013_B12.b : CTGGCCGGATTGAAAGCCGTGGATGTGGGCCTCAGAATAATGACGCGGGTATGCTGGTTG
BMWN1_0074_H06.b : agtaacgtgagcttatccgcctctgctgtctcgAGAATAATGACGCGGGTATGCTGGTTG


20110601C-004215 : GTGAGACAGGACAGCCGGCACCAGCGTATCAAGCTTCCACATTTGGAAGCAGTCATTGTT
                   ---------+---------+---------+---------+---------+---------+ 213
OVR01_0042_B03.b : GTGAGACAGGACAGCCGGCACCAGCGTATCAAGCTTCCACATTTGGAAGCAGTCATTGTT
CLNT1_0001_C02.b : GTGAGACAGGACAGCCGGCACCAGCGTATCAAGCTTCCACATTTGGAAGCAGTCATTGTT
CLNT1_0108_D10.b : GTGAGACAGGACAGCCGGCACCAGCGTATCAAGCTTCCACATTTGGAAGCAGTCATTGTT
ITT01_0063_E06.b : GTGAGACAGGACAGCCGGCACCAGCGTATCAAGCTTCCACATTTGGAAGCAGTCATTGTT
LNG01_0013_B12.b : GTGAGACAGGACAGCCGGCACCAGCGTATCAAGCTTCCACATTTGGAAGCAGTCATTGTT
BMWN1_0074_H06.b : GTGAGACAGGACAGCCGGCACCAGCGTATCAAGCTTCCACATTTGGAAGCAGTCATTGTT


20110601C-004215 : GGGCGAGGCCCAGAGACCAAGATCACTGACAAGAAGTGCTCTCGACAGCAAGTGCAATTG
                   ---------+---------+---------+---------+---------+---------+ 273
OVR01_0042_B03.b : GGGCGAGGCCCAGAGACCAAGATCACTGACAAGAAGTGCTCTCGACAGCAAGTGCAATTG
CLNT1_0001_C02.b : GGGCGAGGCCCAGAGACCAAGATCACTGACAAGAAGTGCTCTCGACAGCAAGTGCAATTG
CLNT1_0108_D10.b : GGGCGAGGCCCAGAGACCAAGATCACTGACAAGAAGTGCTCTCGACAGCAAGTGCAATTG
ITT01_0063_E06.b : GGGCGAGGCCCAGAGACCAAGATCACTGACAAGAAGTGCTCTCGACAGCAAGTGCAATTG
LNG01_0013_B12.b : GGGCGAGGCCCAGAGACCAAGATCACTGACAAGAAGTGCTCTCGACAGCAAGTGCAATTG
BMWN1_0074_H06.b : GGGCGAGGCCCAGAGACCAAGATCACTGACAAGAAGTGCTCTCGACAGCAAGTGCAATTG


20110601C-004215 : AAAGCAGAATGTAACAAAGGATATGTCAAGGTAAAGCAGGTAGGGGTCAATCCCACCAGC
                   ---------+---------+---------+---------+---------+---------+ 333
OVR01_0042_B03.b : AAAGCAGAATGTAACAAAGGATATGTCAAGGTAAAGCAGGTAGGGGTCAATCCCACCAGC
CLNT1_0001_C02.b : AAAGCAGAATGTAACAAAGGATATGTCAAGGTAAAGCAGGTAGGGGTCAATCCCACCAGC
CLNT1_0108_D10.b : AAAGCAGAATGTAACAAAGGATATGTCAAGGTAAAGCAGGTAGGGGTCAATCCCACCAGC
ITT01_0063_E06.b : AAAGCAGAATGTAACAAAGGATATGTCAAGGTAAAGCAGGTAGGGGTCAATCCCACCAGC
LNG01_0013_B12.b : AAAGCAGAATGTAACAAAGGATATGTCAAGGTAAAGCAGGTAGGGGTCAATCCCACCAGC
BMWN1_0074_H06.b : AAAGCAGAATGTAACAAAGGATATGTCAAGGTAAAGCAGGTAGGGGTCAATCCCACCAGC


20110601C-004215 : ATTGACTCAGTCATAATTGGTAAGGACCAAGAGATGAAGCTGCAGCCTGGCCAGGTTCTC
                   ---------+---------+---------+---------+---------+---------+ 393
OVR01_0042_B03.b : ATTGACTCAGTCATAATTGGTAAGGACCAAGAGATGAAGCTGCAGCCTGGCCAGGTTCTC
CLNT1_0001_C02.b : ATTGACTCAGTCATAATTGGTAAGGACCAAGAGATGAAGCTGCAGCCTGGCCAGGTTCTC
CLNT1_0108_D10.b : ATTGACTCAGTCATAATTGGTAAGGACCAAGAGATGAAGCTGCAGCCTGGCCAGGTTCTC
ITT01_0063_E06.b : ATTGACTCAGTCATAATTGGTAAGGACCAAGAGATGAAGCTGCAGCCTGGCCAGGTTCTC
LNG01_0013_B12.b : ATTGACTCAGTCATAATTGGTAAGGACCAAGAGATGAAGCTGCAGCCTGGCCAGGTTCTC
BMWN1_0074_H06.b : ATTGACTCAGTCATAATTGGTAAGGACCAAGAGATGAAGCTGCAGCCTGGCCAGGTTCTC


20110601C-004215 : CACATGGTGAATGAACTTTATCCATATGTTATAGAGTTTGAGGAAGAGGCAAAGAGCCCT
                   ---------+---------+---------+---------+---------+---------+ 453
OVR01_0042_B03.b : CACATGGTGAATGAACTTTATCCATATGTTATAGAGTTTGAGGAAGAGGCAAAGAGCCCT
CLNT1_0001_C02.b : CACATGGTGAATGAACTTTATCCATATGTTATAGAGTTTGAGGAAGAGGCAAAGAGCCCT
CLNT1_0108_D10.b : CACATGGTGAATGAACTTTATCCATATGTTATAGAGTTTGAGGAAGAGGCAAAGAGCCCT
ITT01_0063_E06.b : CACATGGTGAATGAACTTTATCCATATGTTATAGAGTTTGAGGAAGAGGCAAAGAGCCCT
LNG01_0013_B12.b : CACATGGTGAATGAACTTTATCCATATGTTATAGAGTTTGAGGAAGAGGCAAAGAGCCCT
BMWN1_0074_H06.b : CACATGGTGAATGAACTTTATCCATATGTTATAGAGTTTGAGGAAGAGGCAAAGAGCCCT


20110601C-004215 : GGCCTGAAAACACACAGGAAGAGAAAGAGGTCAGGCAACAGTGATTCTGTAGAAAGGGAT
                   ---------+---------+---------+---------+---------+---------+ 513
OVR01_0042_B03.b : GGCCTGAAAACACACAGGAAGAGAAAGAGGTCAGGCAACAGTGATTCTGTAGAAAGGGAT
CLNT1_0001_C02.b : GGCCTGAAAACACACAGGAAGAGAAAGAGGTCAGGCAACAGTGATTCTGTAGAAAGGGAT
CLNT1_0108_D10.b : GGCCTGAAAACACACAGGAAGAGAAAGAGGTCAGGCAACAGTGATTCTGTAGAAAGGGAT
ITT01_0063_E06.b : GGCCTGAAAACACACAGGAAGAGAAAGAGGTCAGGCAACAGTGATTCTGTAGAAAGGGAT
LNG01_0013_B12.b : GGCCTGAAAACACACAGGAAGAGAAAGAGGTCAGGCAACAGTGATTCTGTAGAAAGGGAT
BMWN1_0074_H06.b : GGCCTGAAAACACACAGGAAGAGAAAGAGGTCAGGCAACAGTGATTCTGTAGAAAGGGAT


20110601C-004215 : GCTTCTCAGGAAGCTAAGCCCAGTACAGGAGCAGAACCTGGGAGCAACCCTAGCCAGTGC
                   ---------+---------+---------+---------+---------+---------+ 573
OVR01_0042_B03.b : GCTTCTCAGGAAGCTAAGCCCAGTACAGGAGCAGAACCTGGGAGCAACCCTAGCCAGTGC
CLNT1_0001_C02.b : GCTTCTCAGGAAGCTAAGCCCAGTACAGGAGCAGAACCTGGGAGCAACCCTAGCCAGTGC
CLNT1_0108_D10.b : GCTTCTCAGGAAGCTAAGCCCAGTACAGGAGCAGAACCTGGGAGCAACCCTAGCCAGTGC
ITT01_0063_E06.b : GCTTCTCAGGAAGCTAAGCCCAGTACAGGAGCAGAACCTGGGAGCAACCCTAGCCAGTGC
LNG01_0013_B12.b : GCTTCTCAGGAAGCTAAGCCCAGTACAGGAGCAGAACCTGGGAGCAACCCTAGCCAGTGC
BMWN1_0074_H06.b : GCTTCTCAGGAAGCTAAGCCCAGTACAGGAGCAGAACCTGGGAGCAACCCTAGCCAGTGC


20110601C-004215 : TCTGTGCCCGCAAAGAAGGAAAAGGATGCAGCCACCAAAAAGGAATCATTGAGCCACTGG
                   ---------+---------+---------+---------+---------+---------+ 633
OVR01_0042_B03.b : TCTGTGCCCCCAAAGAAGGAAAAGGATGCAGCCACCAAAAAGGAATCATTGAGCCACTGG
CLNT1_0001_C02.b : TCTGTGCCCGCAAAGAAGGAAAAGGATGCAGCCACCAAAAAGGAATCATTGAGCCACTGG
CLNT1_0108_D10.b : TCTGTGCCCGCAAAGAAGGAAAAGGATGCAGCCACCAAAAAGGAATCATTGAGCCACTGG
ITT01_0063_E06.b : TCTGTGCCCCCAAAGAAGGAAAAGGATGCAGCCACCAAAAAGGAATCATTGAGCCACTGG
LNG01_0013_B12.b : TCTGTGCCCCCAAAGAAGGAAAAGGATGCAGCCACCAAAAAGGAATCATTGAGCCACTGG
BMWN1_0074_H06.b : TCTGTGCCCGCAAAGAAGGAAAAGGATGCAGCCACCAAAAAGGAATCATTGAGCCACTGG


20110601C-004215 : AGTCAAGGCTTGAAGATTTCCATGGAGGACCCCAAAATGCAGGTTTACAAAGATGACCAG
                   ---------+---------+---------+---------+---------+---------+ 693
OVR01_0042_B03.b : AGTCAAGGCTTGAAGATTTCCATGGAGGACCCCAAAATGCAGGTTTACAAAGATGACCAG
CLNT1_0001_C02.b : AGTCAAGGCTTGAAGATTTCCATGGAGGACCCCAAAATGCAGGTTTACAAAGATGACCAG
CLNT1_0108_D10.b : AGTCAAGGCTTGAAGATTTCCATGGAGGACCCCAAAATGCAGGTTTACAAAGATGACCAG
ITT01_0063_E06.b : AGTCAAGGCTTGAAGATTTCCATGGAGGACCCCAAAATGCAGGTTTACAAAGATGACCAG
LNG01_0013_B12.b : AGTCGAGGCTTGAAGATTTCCATGGAGGACCCTAAAATGCAGGTTTACAAAGATGACCAG
BMWN1_0074_H06.b : AGTCAAGGCTTGAAGATTTCCATGGAGGACCCCAAAATGCATGTTTACAAAGATGACCAG


20110601C-004215 : GTGGTGGTGATTAAGGATAAATACCCCAAGGCTCGTTACCACTGGCTGGTCTTACCATGG
                   ---------+---------+---------+---------+---------+---------+ 753
OVR01_0042_B03.b : GTGGTGGTGATTAAGGATAAATACCCCAAGGCTCGTTACCACTGGCTGGTCTTACCATGG
CLNT1_0001_C02.b : GTGGTGGTGATTAAGGATAAATACCCCAAGGCTCGTTACCACTGGCTGGTCTTACCATGG
CLNT1_0108_D10.b : GTGGTGGTGATTAANGGATAATACCCCANGGCTCGTTACCACTGGCTGGTCTTTACATGG
ITT01_0063_E06.b : GTGGTGGTGATTAAGGATAAATACCCCAAGGCTCGTTACCACTGGCTGGTCTTACCATGG
LNG01_0013_B12.b : GTGGTGGTGATTAAGGATAAATACCCCAAGGCTCGTTACCACTGGCTGGTCTTACCATGG
BMWN1_0074_H06.b : GTGGTGGTGATTAANGATAAATACCCCAAGGCTCGTTACCACTGGCTGGTCTTACCATGG


20110601C-004215 : GCCTCCATTTCCAGTCTGAAGGCTGTTACCAGAGAACACC*TTGAGCTCCTCAGACACAT
                   ---------+---------+---------+---------+---------+---------+ 812
OVR01_0042_B03.b : GCCTCCATTTCCCGTCTGAAGGCTGTTACCAGAGAACACCTTTGAGCTCCTCAGACACAT
CLNT1_0001_C02.b : GCCTCCATTTCCAGTCTGAAGGCTGTTACCAGAGAACACC*TTGAGCTCCTCAGACACAT
CLNT1_0108_D10.b : GCCTCCATTTCCAGTCTGAAGGCTGTTACCAGAGA*CACC*TTGAGCTCCTC*GACACAT
ITT01_0063_E06.b : GCCTCCATTTCCAGTCTGAAGGCTGTTACCAGAGAACACC*TTGAGCTCCTCAGACACAT
LNG01_0013_B12.b : GCCTCCATTTCCAGTCTGAAGGCTGTTACCAGAGAACACC*TTGAGCTCCTCAGACACAT
BMWN1_0074_H06.b : GCCTCCATTTCCAGTCTGAAGGCTGTTACCAGAGAACACC*TTGAGCTCCTCAGACACAT


20110601C-004215 : GCACACTGTGGGGGAAAAGGTGATTGCAGACTTTGCTGGCTCCAGCAAACTCCGCTTCCG
                   ---------+---------+---------+---------+---------+---------+ 872
OVR01_0042_B03.b : GCACACTGTGGGGGAAAAGGTGATTGCAGACTTTGCTGGTTCCACCAAACTCCGCTTCCG
CLNT1_0001_C02.b : GCACACTGTGGGGGAAAAGGTGATTGCAGACTTTGCTGGCTCCAGCAAACTCCGCTTCCG
CLNT1_0108_D10.b : GCACACTGTGGGGGAAAAAGTGATTGCAAACTTTGCTGGGCTCAGCAAACTCCGCTTTCG
ITT01_0063_E06.b : GCACACTGTGGGGGAAAAGGTGATTGCAGACTTTGCTGGCTCCAGCAAACTCCGCTTCCG
LNG01_0013_B12.b : GCACACTGTGGGGGAAAAGGTGATTGCAGACTTTGCTGGCTCCAGCAAACTCCGCTTCCG
BMWN1_0074_H06.b : GCACACTGTGGGGGAAAAGGTGATTGCAGACTTTGCTGGGCTCAAGCAACTCCGCTTCGG


20110601C-004215 : ATTGGGCTACC*ACGCCATTCCTAGCATGAGTCACGTACACCTTCATGTGATCAGCCAGG
                   ---------+---------+---------+---------+---------+---------+ 931
OVR01_0042_B03.b : ATTGGGCTACCCACGCCTTTCCTACCATGAATCACGTACACCCTTCTGTGATCAGCCAGG
CLNT1_0001_C02.b : ATTGGGCTACC*ACGCCATTCCTAGCATGAGTCACGTACACCTTCATGTGgatcagccag
CLNT1_0108_D10.b : ATTGGGCTACC*ACGCCATTCCTAGCATGAGTCACGTACACCTTCATGTGATCAGCCAGG
ITT01_0063_E06.b : ATTGGGCTACC*ACGCCATTCCTAGCATGAGTCACGTACACCTTCATGTGATCAGCCAGG
LNG01_0013_B12.b : ATTGGGCTACC*ACGCCATTCCTAGCATGAGTCACGTACACCTTCATGTGATCAGCCAGG
BMWN1_0074_H06.b : ATTGGGCTACC*ACGCCATTCCTAGCATGAGTCACGTACACCTTCATGTGATCAGCCAGG


20110601C-004215 : ACTTTGATTCTCCTTGCCCTAAAAACAAAAAGCATTGGAAT...................
                   ---------+---------+---------+---------+---------+---------+ 972
OVR01_0042_B03.b : ACTTTTATTCTCCTTGCCTttaaaacaaaaaccattgaaatttttttaataccgaaaact
CLNT1_0001_C02.b : gacttgattctccttgncnntaaaaaacaaagcattggaattcttccaataccgaataac
CLNT1_0108_D10.b : ACTTTGATTCTCttgccntaaaaacaaaagcatgggattctttcaatacgaatactcctt
ITT01_0063_E06.b : ACTTTGATTCTCCNTTGCCTTAAAACAAAAAGCATTGGAAttctttncataccgatactt
LNG01_0013_B12.b : ACTTTGATTCTCCTTGCCTTTAAAACAAAAAGCATTGGAATtctttcaataccngaatac
BMWN1_0074_H06.b : ACTTTGATTCTCCTTG*CCTAAAAACAAAAAGCATTGGAAttcnttcaataccaatactt


20110601C-004215 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 972
OVR01_0042_B03.b : ttccctggaatcacaagcttgggattgaaaatagaaaaaaaagggtttggaaaaaagaaa
CLNT1_0001_C02.b : tcctggaatcacaagctgtgattgaaatggtacaagaggctggcaaattgactgtcccaa
CLNT1_0108_D10.b : gaatcccaaccgtaatgaaaggtacaaaaagctggcaaatgactgtccaaaatggaatcc
ITT01_0063_E06.b : cctggaatcacagctgtgattgaaatggtacannagctggcaaatgactgtccnaaatgg
LNG01_0013_B12.b : ttcctgaaatcaccaagctggtgatgaagatgggtacaagaaggctgggcaaaattgaac
BMWN1_0074_H06.b : cctggaatccaagctgtgattgaaatgtaccaaaaggctgccaagtgactgcccaaatgg


20110601C-004215 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 972
OVR01_0042_B03.b : ttgtccccaaaatggggattccctggaacccctttaaaaatttgccccccccccgttttt
CLNT1_0001_C02.b : aatggatggctgaactcttgaagctgcccctccgttccctgaatgccaaaaactgctgcc
CLNT1_0108_D10.b : taacccttgaactgcccccccttttctagatgccaaatttgtgctttctcccttggtaaa
ITT01_0063_E06.b : natgctgacctctgaagctgcccctcgttgtcagagtgcaacagttgtggctccatcctt
LNG01_0013_B12.b : tgtcccgaaaaatggggatgccctgaaaacttctttgaaagcctgccccccttcccgttt
BMWN1_0074_H06.b : gatgccgaactcttgagctgcccctcgttgtcaggaatgcagaagtgctgcctctctcct


20110601C-004215 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 972
OVR01_0042_B03.b : ccttgaaaagggccccatcaaacttttcctgtccccttttccctttctcccccccacact
CLNT1_0001_C02.b : ttcattcctcaactgaaaaactctccaggagccctggccaaatgtactctcacaaggggg
CLNT1_0108_D10.b : aaactcccggaccctggccagtacctccccggggggggggtttttcaaatccgccccccg
ITT01_0063_E06.b : actgaaaaacttccggaacctgggcaatgacctgcccaaggtggctggtgttaccaaatc
LNG01_0013_B12.b : tgtttattggaaattggcccaagcccaaacccttggccctgtgcccccttttttcccaat
BMWN1_0074_H06.b : aactgaaaaaacttcaggaacctgcccaaatgaccttcacagggtgcctgtttttaagca


20110601C-004215 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 972
OVR01_0042_B03.b : tttaaaaaaaaaaaaaaaccatcttcttttcaagagagaaaaaa               
CLNT1_0001_C02.b : ggtggtgttttagacaaatccggcccctcttgaaataaggaaattttttctcggaataaa
CLNT1_0108_D10.b : tgaaaaaggggattttcttcgataaaaaaaattttttttttataaaaaaaaaaaaaaaaa
ITT01_0063_E06.b : tgaccccttgaataatggatttattctgaataaaaaatttttttttaaaaaaaaaagcaa
LNG01_0013_B12.b : ttcccccctctt                                               
BMWN1_0074_H06.b : atccgggccccttgaaaaaagggattttattcggaataaaacaaattttttttttaaaaa


20110601C-004215 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 972
OVR01_0042_B03.b :                                                             
CLNT1_0001_C02.b : caaaattttttttttttaaaaaaaaaaaaaaannaaaaaaggcctttgtctaatttggtg
CLNT1_0108_D10.b : acacttttctttgtggcggccctaataaaaaaaaccccccccccacaaaaaaaaagtttt
ITT01_0063_E06.b : tgccagtggtcggccttaatctcggccgtcgcactttttaggtccaagttataaccgcct
LNG01_0013_B12.b :                                                             
BMWN1_0074_H06.b : aaannnnnnnannaaaaannaaaaaaaaaaaannnnnnnnnnnncgccccgccccctctc


20110601C-004215 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 972
OVR01_0042_B03.b :                                                             
CLNT1_0001_C02.b : gcccgctaaatttttaaaaaacccccacccccagacacaaaaaaaagaactttgttactt
CLNT1_0108_D10.b : tttttttttaatgttaaaaaaaaaataaaattttttttgtttt                
ITT01_0063_E06.b : taccggaagcgggttgaaatgggaagaccaaacaaaataaaaaccccgnnaaaaaaattt
LNG01_0013_B12.b :                                                             
BMWN1_0074_H06.b : ttgtttttttttctaaaaaatttttgggccacacacccgaaattttttttttgtgttttt


20110601C-004215 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 972
OVR01_0042_B03.b :                                                             
CLNT1_0001_C02.b : ttttttta                                                   
CLNT1_0108_D10.b :                                                             
ITT01_0063_E06.b : aancctaatacattatatgccgnnnacannnnnnnnnnnnna                 
LNG01_0013_B12.b :                                                             
BMWN1_0074_H06.b : cttaccaaaaacaaaaacttttgttggggggggggtgtttatacccggggggtctcctcc


20110601C-004215 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 972
OVR01_0042_B03.b :                                                             
CLNT1_0001_C02.b :                                                             
CLNT1_0108_D10.b :                                                             
ITT01_0063_E06.b :                                                             
LNG01_0013_B12.b :                                                             
BMWN1_0074_H06.b : ttccnngccccnnnnnggggggcgcgtcccttccccctcttctgnnnnnnnnnnnnnnnn


20110601C-004215 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 972
OVR01_0042_B03.b :                                                             
CLNT1_0001_C02.b :                                                             
CLNT1_0108_D10.b :                                                             
ITT01_0063_E06.b :                                                             
LNG01_0013_B12.b :                                                             
BMWN1_0074_H06.b : nnnnn