Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-004259

Sequence: [FASTA format sequence] TTTCCTCTGA CCGACCTGTG GGGAAGCAGA GAGGCCTGGA GAGAGGGAAG ACCTGGGCCA AGGAAGAGGC AGAGGCTGCA GCCTGCCTCC CCCTGTCCCC AGCCTGCCTC CACCGCCCTC CTCAGCCAAA GCCCCTTCGA GTCCCCTGGG GCTCAGCCCC TCCCCCTGTC CCGGGCCCGG GCTGCCCGCG GGGCCTGCCT CCCACCATGT CGGTGGCTGT GGAGATCTTC GGCTTCTTCA TGGCAGCCCT GGGGTTGGTG CTGCTGGGGG TGACGCTGCC GCACAGCAGC TGGCGAGTGT CCACCGTGCA CGGGAACGTC ATCACCACCA ATACCATCTT CGAGAACCTC TGGTACAGCT GCGCCACCGA CTCCCTCGGG GTCTACAACT GCTGGGAGTT CCCGTCCATG CTGGCCCTCT CGGGGTACAT CCAGGCCTGC CGGGCGCTCA TGATCACCGC CATCCTCCTG GGCTTCCTGG GCCTCTTCCT GGGCATGGTG GGGCTGCGCT GCACGAACAT TGGGGGCCTG GAGCTCTCCA GGAAAACCAA GCTGGCGGCT ACCGCAGGGG CCCTACACAT ACTGGCCGGG GTCTGCGGGA TGGTGGCTAT CTCCTGGTAT GCCTTCAACA TCACCCGGGA CTTCTTCGAC CCCTTGTATC CGGGGACCAA GTATGAGCTG GGCCCCGCGC TCTACCTGGG CTGGACCGCC TCCCTGCTCT CCATCCTGGG CGGCATCTGC CTCTGCTCCA GCTGCTGCTG CGCTCAGGAC GACGACCCAG CAGCCAACGT CCGGGTTCCC TACAAGGCCC CGATGCCCGC CTCCAGCCTC ACTGCCCGCT TGCCCGCCGT AGCCTCGGAT GAAGACGGCG ACAGCAGCTT CGCCAGTATG GGAAAAACGC TTACGTATAG GAGGCCTGGC CCGGTGGACA CATTCGCTTC CTACTGCTCC CAGTGGAACC CCCGGGCTGC AGGCGCGGGT CCCTACTCCC TGGTAACAGC TCTGGGCCAG CCTTGCATCA G

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
CLDN15 claudin-15 [Homo sapiens]. 310 1e-84 O

CLDN15 claudin-15 [Homo sapiens]. 310 1e-84 O

CLDN10 claudin-10 isoform b [Homo sapiens]. 157 1e-38 O

CLDN10 claudin-10 isoform a [Homo sapiens]. 120 2e-27 O

CLDN19 claudin-19 isoform b [Homo sapiens]. 119 4e-27 O

CLDN19 claudin-19 isoform a [Homo sapiens]. 119 4e-27 O

CLDN7 claudin-7 isoform 1 [Homo sapiens]. 114 2e-25 O

CLDN7 claudin-7 isoform 1 [Homo sapiens]. 114 2e-25 O

CLDN10 claudin-10 isoform a_i1 [Homo sapiens]. 103 3e-22 O

CLDN1 claudin-1 [Homo sapiens]. 100 2e-21 O

Locus	Definition	Score	E value	FL
CLDN15	claudin-15 [Homo sapiens].	310	1e-84	O
CLDN15	claudin-15 [Homo sapiens].	310	1e-84	O
CLDN10	claudin-10 isoform b [Homo sapiens].	157	1e-38	O
CLDN10	claudin-10 isoform a [Homo sapiens].	120	2e-27	O
CLDN19	claudin-19 isoform b [Homo sapiens].	119	4e-27	O
CLDN19	claudin-19 isoform a [Homo sapiens].	119	4e-27	O
CLDN7	claudin-7 isoform 1 [Homo sapiens].	114	2e-25	O
CLDN7	claudin-7 isoform 1 [Homo sapiens].	114	2e-25	O
CLDN10	claudin-10 isoform a_i1 [Homo sapiens].	103	3e-22	O
CLDN1	claudin-1 [Homo sapiens].	100	2e-21	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Cldn15 claudin-15 [Mus musculus]. 263 2e-70 O

Cldn10 claudin-10A isoform b [Mus musculus]. 161 9e-40 O

Cldn10 claudin-10A isoform b_i1 [Mus musculus]. 141 7e-34 O

Cldn10 claudin-10A isoform a [Mus musculus]. 122 6e-28 O

Cldn19 claudin-19 isoform 1 [Mus musculus]. 121 1e-27 O

Cldn19 claudin-19 isoform 2 [Mus musculus]. 121 1e-27 O

Cldn7 claudin-7 [Mus musculus]. 115 5e-26 O

Cldn7 claudin-7 [Mus musculus]. 115 5e-26 O

Cldn10 claudin-10A isoform a_i1 [Mus musculus]. 105 7e-23 O

Cldn10 claudin-10A isoform a_i2 [Mus musculus]. 102 5e-22 O

Locus	Definition	Score	E value	FL
Cldn15	claudin-15 [Mus musculus].	263	2e-70	O
Cldn10	claudin-10A isoform b [Mus musculus].	161	9e-40	O
Cldn10	claudin-10A isoform b_i1 [Mus musculus].	141	7e-34	O
Cldn10	claudin-10A isoform a [Mus musculus].	122	6e-28	O
Cldn19	claudin-19 isoform 1 [Mus musculus].	121	1e-27	O
Cldn19	claudin-19 isoform 2 [Mus musculus].	121	1e-27	O
Cldn7	claudin-7 [Mus musculus].	115	5e-26	O
Cldn7	claudin-7 [Mus musculus].	115	5e-26	O
Cldn10	claudin-10A isoform a_i1 [Mus musculus].	105	7e-23	O
Cldn10	claudin-10A isoform a_i2 [Mus musculus].	102	5e-22	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC608226 PREDICTED: similar to Claudin-15 [Canis familiaris]. 181 1e-45 O

LOC476963 PREDICTED: similar to claudin 10 isoform b isoform 1 [Canis familiaris]. 159 5e-39 O

LOC476963 PREDICTED: similar to claudin 10 isoform b isoform 3 [Canis familiaris]. 139 4e-33 O

LOC476963 PREDICTED: similar to claudin 10 isoform a isoform 2 [Canis familiaris]. 122 7e-28 O

LOC607005 PREDICTED: similar to claudin 19 (predicted) [Canis familiaris]. 115 5e-26

LOC489466 PREDICTED: similar to Claudin-7 (CLDN-7) [Canis familiaris]. 110 2e-24 O

LOC489802 PREDICTED: similar to claudin 4 [Canis familiaris]. 103 3e-22 O

LOC487751 PREDICTED: similar to claudin 14 (predicted) [Canis familiaris]. 99.4 5e-21 O

LOC486420 PREDICTED: similar to claudin 5 [Canis familiaris]. 99 6e-21

LOC608207 PREDICTED: similar to Claudin-1 [Canis familiaris]. 99 6e-21 O

Locus	Definition	Score	E value	FL
LOC608226	PREDICTED: similar to Claudin-15 [Canis familiaris].	181	1e-45	O
LOC476963	PREDICTED: similar to claudin 10 isoform b isoform 1 [Canis familiaris].	159	5e-39	O
LOC476963	PREDICTED: similar to claudin 10 isoform b isoform 3 [Canis familiaris].	139	4e-33	O
LOC476963	PREDICTED: similar to claudin 10 isoform a isoform 2 [Canis familiaris].	122	7e-28	O
LOC607005	PREDICTED: similar to claudin 19 (predicted) [Canis familiaris].	115	5e-26
LOC489466	PREDICTED: similar to Claudin-7 (CLDN-7) [Canis familiaris].	110	2e-24	O
LOC489802	PREDICTED: similar to claudin 4 [Canis familiaris].	103	3e-22	O
LOC487751	PREDICTED: similar to claudin 14 (predicted) [Canis familiaris].	99.4	5e-21	O
LOC486420	PREDICTED: similar to claudin 5 [Canis familiaris].	99	6e-21
LOC608207	PREDICTED: similar to Claudin-1 [Canis familiaris].	99	6e-21	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
CLDN15 claudin-15 [Bos taurus]. 327 8e-90 O

CLDN10 claudin-10 isoform a [Bos taurus]. 157 1e-38 O

CLDN10 claudin-10 isoform b [Bos taurus]. 120 2e-27 O

CLDN19 claudin-19 [Bos taurus]. 119 3e-27 O

CLDN7 claudin-7 [Bos taurus]. 117 2e-26 O

CLDN4 claudin-4 [Bos taurus]. 103 2e-22 O

CLDN5 claudin-5 [Bos taurus]. 99 6e-21 O

CLDN14 PREDICTED: claudin 14-like [Bos taurus]. 98.2 1e-20 O

CLDN14 PREDICTED: claudin 14 [Bos taurus]. 98.2 1e-20 O

CLDN1 claudin-1 [Bos taurus]. 97.4 2e-20 O

Locus	Definition	Score	E value	FL
CLDN15	claudin-15 [Bos taurus].	327	8e-90	O
CLDN10	claudin-10 isoform a [Bos taurus].	157	1e-38	O
CLDN10	claudin-10 isoform b [Bos taurus].	120	2e-27	O
CLDN19	claudin-19 [Bos taurus].	119	3e-27	O
CLDN7	claudin-7 [Bos taurus].	117	2e-26	O
CLDN4	claudin-4 [Bos taurus].	103	2e-22	O
CLDN5	claudin-5 [Bos taurus].	99	6e-21	O
CLDN14	PREDICTED: claudin 14-like [Bos taurus].	98.2	1e-20	O
CLDN14	PREDICTED: claudin 14 [Bos taurus].	98.2	1e-20	O
CLDN1	claudin-1 [Bos taurus].	97.4	2e-20	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
CLDN15 claudin-15 [Sus scrofa]. 369 e-102 O

CLDN10 claudin-10 [Sus scrofa]. 156 2e-38 O

LOC100621463 PREDICTED: claudin-7-like [Sus scrofa]. 122 2e-28 O

CLDN7 claudin-7 [Sus scrofa]. 122 2e-28 O

CLDN19 claudin-19 [Sus scrofa]. 120 1e-27 O

CLDN4 claudin-4 [Sus scrofa]. 103 2e-22 O

CLDN5 claudin-5 [Sus scrofa]. 98.6 5e-21 O

LOC100625166 PREDICTED: claudin-1-like [Sus scrofa]. 95.9 3e-20 O

CLDN14 claudin-14 [Sus scrofa]. 92.4 4e-19 O

CLDN9 claudin-9 [Sus scrofa]. 88.6 5e-18 O

Locus	Definition	Score	E value	FL
CLDN15	claudin-15 [Sus scrofa].	369	e-102	O
CLDN10	claudin-10 [Sus scrofa].	156	2e-38	O
LOC100621463	PREDICTED: claudin-7-like [Sus scrofa].	122	2e-28	O
CLDN7	claudin-7 [Sus scrofa].	122	2e-28	O
CLDN19	claudin-19 [Sus scrofa].	120	1e-27	O
CLDN4	claudin-4 [Sus scrofa].	103	2e-22	O
CLDN5	claudin-5 [Sus scrofa].	98.6	5e-21	O
LOC100625166	PREDICTED: claudin-1-like [Sus scrofa].	95.9	3e-20	O
CLDN14	claudin-14 [Sus scrofa].	92.4	4e-19	O
CLDN9	claudin-9 [Sus scrofa].	88.6	5e-18	O

Assembly Members: 6 TOP

Library Plate Loc. Read Name Accession Full Seq.

CLNT1 0034 D02 CLNT1_0034_D02.b FS659709
CLNT1 0045 B07 CLNT1_0045_B07.b FS660588
CLNT1 0059 B01 CLNT1_0059_B01.b FS661686 AK391082
ITT01 0003 F05 ITT01_0003_F05.b BW976278
ITT01 0020 F06 ITT01_0020_F06.b BW977821 AK231230
ITT01 0030 D04 ITT01_0030_D04.b BW978694

SNP: 1 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
332 C 2 0 0.333 W S AAC/N
T 4 0 0.667 AAT/N

Alignment: TOP

20110601C-004259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
CLNT1_0059_B01.b : nnnttccgtcagctgacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0034_D02.b :  ggctnacttcagcgnacgagtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0045_B07.b :  nggggccgtttgcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0020_F06.b :                    nnnggatgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0030_D04.b :                   nngggtgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0003_F05.b :                    nnnggatgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-004259 : .............TTTCCTCTGACCGACCTGTGGGGAAGCAGAGAGGCCTGGAGAGAGGG
                   ---------+---------+---------+---------+---------+---------+ 47
CLNT1_0059_B01.b : xxxxxxxxxxxxxTTTCCTCTGACCGACCTGTGGGGAAGCAGAGAGGCCTGGAGAGAGGG
CLNT1_0034_D02.b : xxxxxxxxxxxxxxTTCCTCTGACCGACCTGTGGGGAAGCAGAGAGGCCTGGAGAGAGGG
CLNT1_0045_B07.b : xxxxxxxxxxxxxxTTCCTCTGACCGACCTGTGGGGAAGCAGAGAGGCCTGGAGAGAGGG
ITT01_0020_F06.b : xxxxxxxxxxxxxxTTCCTCTGACCGACCTGTGGGGAAGCAGAGAGGCCTGGAGAGAGGG
ITT01_0030_D04.b : xxxxxxxxxxxxxxTTCCTCTGACCGACCTGTGGGGAAGCAGAGAGGCCTGGAGAGAGGG
ITT01_0003_F05.b : xxxxxxxxxxxxxtTTCCTCTGACCGACCTGTGGGGAAGCAGAGAGGCCTGGAGAGAGGG


20110601C-004259 : AAGACCTGGGCCAAGGAAGAGGCAGAGGCTGCAGCCTGCCTCCCCCTGTCCCCAGCCTGC
                   ---------+---------+---------+---------+---------+---------+ 107
CLNT1_0059_B01.b : AAGACCTGGGCCAAGGAAGAGGCAGAGGCTGCAGCCTGCCTCCCCCTGTCCCCAGCCTGC
CLNT1_0034_D02.b : AAGACCTGGGCCAAGGAAGAGGCAGAGGCTGCAGCCTGCCTCCCCCTGTCCCCAGCCTGC
CLNT1_0045_B07.b : AAGACCTGGGCCAAGGAAGAGGCAGAGGCTGCAGCCTGCCTCCCCCTGTCCCCAGCCTGC
ITT01_0020_F06.b : AAGACCTGGGCCAAGGAAGAGGCAGAGGCTGCAGCCTGCCTCCCCCTGTCCCCAGCCTGC
ITT01_0030_D04.b : AAGACCTGGGCCAAGGAAGAGGCAGAGGCTGCAGCCTGCCTCCCCCTGTCCCCAGCCTGC
ITT01_0003_F05.b : AAGACCTGGGCCAAGGAAGAGGCAGAGGCTGCAGCCTGCCTCCCCCTGTCCCCAGCCTGC


20110601C-004259 : CTCCACCGCCCTCCTCAGCCAAAGCCCCTTCGAGTCCCCTGGGGCTCAGCCCCTCCCCCT
                   ---------+---------+---------+---------+---------+---------+ 167
CLNT1_0059_B01.b : CTCCACCGCCCTCCTCAGCCAAAGCCCCTTCGAGTCCCCTGGGGCTCAGCCCCTCCCCCT
CLNT1_0034_D02.b : CTCCACCGCCCTCCTCAGCCAAAGCCCCTTCGAGTCCCCTGGGGCTCAGCCCCTCCCCCT
CLNT1_0045_B07.b : CTCCACCGCCCTCCTCAGCCAAAGCCCCTTCGAGTCCCCTGGGGCTCAGCCCCTCCCCCT
ITT01_0020_F06.b : CTCCACCGCCCTCCTCAGCCAAAGCCCCTTCGAGTCCCCTGGGGCTCAGCCCCTCCCCCT
ITT01_0030_D04.b : CTCCACCGCCCTCCTCAGCCAAAGCCCCTTCGAGTCCCCTGGGGCTCAGCCCCTCCCCCT
ITT01_0003_F05.b : CTCCACCGCCCTCCTCAGCCAAAGCCCCTTCGAGTCCCCTGGGGCTCAGCCCCTCCCCCT


20110601C-004259 : GTCCCGGGCCCGGGCTGCCCGCGGGGCCTGCCTCCCACCATGTCGGTGGCTGTGGAGATC
                   ---------+---------+---------+---------+---------+---------+ 227
CLNT1_0059_B01.b : GTCCCGGGCCCGGGCTGCCCGCGGGGCCTGCCTCCCACCATGTCGGTGGCTGTGGAGATC
CLNT1_0034_D02.b : GTCCCGGGCCCGGGCTGCCCGCGGGGCCTGCCTCCCACCATGTCGGTGGCTGTGGAGATC
CLNT1_0045_B07.b : GTCCCGGGCCCGGGCTGCCCGCGGGGCCTGCCTCCCACCATGTCGGTGGCTGTGGAGATC
ITT01_0020_F06.b : GTCCCGGGCCCGGGCTGCCCGCGGGGCCTGCCTCCCACCATGTCGGTGGCTGTGGAGATC
ITT01_0030_D04.b : GTCCCGGGCCCGGGCTGCCCGCGGGGCCTGCCTCCCACCATGTCGGTGGCTGTGGAGATC
ITT01_0003_F05.b : GTCCCGGGCCCGGGCTGCCCGCGGGGCCTGCCTCCCACCATGTCGGTGGCTGTGGAGATC


20110601C-004259 : TTCGGCTTCTTCATGGCAGCCCTGGGGTTGGTGCTGCTGGGGGTGACGCTGCCGCACAGC
                   ---------+---------+---------+---------+---------+---------+ 287
CLNT1_0059_B01.b : TTCGGCTTCTTCATGGCAGCCCTGGGGTTGGTGCTGCTGGGGGTGACGCTGCCGCACAGC
CLNT1_0034_D02.b : TTCGGCTTCTTCATGGCAGCCCTGGGGTTGGTGCTGCTGGGGGTGACGCTGCCGCACAGC
CLNT1_0045_B07.b : TTCGGCTTCTTCATGGCAGCCCTGGGGTTGGTGCTGCTGGGGGTGACGCTGCCGCACAGC
ITT01_0020_F06.b : TTCGGCTTCTTCATGGCAGCCCTGGGGTTGGTGCTGCTGGGGGTGACGCTGCCGCACAGC
ITT01_0030_D04.b : TTCGGCTTCTTCATGGCAGCCCTGGGGTTGGTGCTGCTGGGGGTGACGCTGCCGCACAGC
ITT01_0003_F05.b : TTCGGCTTCTTCATGGCAGCCCTGGGGTTGGTGCTGCTGGGGGTGACGCTGCCGCACAGC


20110601C-004259 : AGCTGGCGAGTGTCCACCGTGCACGGGAACGTCATCACCACCAATACCATCTTCGAGAAC
                   ---------+---------+---------+---------+---------+---------+ 347
CLNT1_0059_B01.b : AGCTGGCGAGTGTCCACCGTGCACGGGAACGTCATCACCACCAATACCATCTTCGAGAAC
CLNT1_0034_D02.b : AGCTGGCGAGTGTCCACCGTGCACGGGAACGTCATCACCACCAATACCATCTTCGAGAAC
CLNT1_0045_B07.b : AGCTGGCGAGTGTCCACCGTGCACGGGAACGTCATCACCACCAATACCATCTTCGAGAAC
ITT01_0020_F06.b : AGCTGGCGAGTGTCCACCGTGCACGGGAACGTCATCACCACCAACACCATCTTCGAGAAC
ITT01_0030_D04.b : AGCTGGCGAGTGTCCACCGTGCACGGGAACGTCATCACCACCAATACCATCTTCGAGAAC
ITT01_0003_F05.b : AGCTGGCGAGTGTCCACCGTGCACGGGAACGTCATCACCACCAACACCATCTTCGAGAAC


20110601C-004259 : CTCTGGTACAGCTGCGCCACCGACTCCCTCGGGGTCTACAACTGCTGGGAGTTCCCGTCC
                   ---------+---------+---------+---------+---------+---------+ 407
CLNT1_0059_B01.b : CTCTGGTACAGCTGCGCCACCGACTCCCTCGGGGTCTACAACTGCTGGGAGTTCCCGTCC
CLNT1_0034_D02.b : CTCTGGTACAGCTGCGCCACCGACTCCCTCGGGGTCTACAACTGCTGGGAGTTCCCGTCC
CLNT1_0045_B07.b : CTCTGGTACAGCTACGCCACCGACTCCCTCGGGGTCTACAACTGCTGGGAGTTCCCGTCC
ITT01_0020_F06.b : CTCTGGTACAGCTGCGCCACCGACTCCCTCGGGGTCTACAACTGCTGGGAGTTCCCGTCC
ITT01_0030_D04.b : CTCTGGTACAGCTGCGCCACCGACTCCCTCGGGGTCTACAACTGCTGGGAGTTCCCGTCC
ITT01_0003_F05.b : CTCTGGTACAGCTGCGCCACCGACTCCCTCGGGGTCTACAACTGCTGGGAGTTCCCGTCC


20110601C-004259 : ATGCTGGCCCTCTCGGGGTACATCCAGGCCTGCCGGGCGCTCATGATCACCGCCATCCTC
                   ---------+---------+---------+---------+---------+---------+ 467
CLNT1_0059_B01.b : ATGCTGGCCCTCTCGGGGTACATCCAGGCCTGCCGGGCGCTCATGATCACCGCCATCCTC
CLNT1_0034_D02.b : ATGCTGGCCCTCTCGGGGTACATCCAGGCCTGCCGGGCGCTCATGATCACCGCCATCCTC
CLNT1_0045_B07.b : ATGCTGGCCCTCTCGGGGTACATCCAGGCCTGCCGGGCGCTCATGATCACCGCCATCCTC
ITT01_0020_F06.b : ATGCTGGCCCTCTCGGGGTACATCCAGGCCTGCCGGGCGCTCATGATCACCGCCATCCTC
ITT01_0030_D04.b : ATGCTGGCCCTCTCGGGGTACATCCAGGCCTGCCGGGCGCTCATGATCACCGCCATCCTC
ITT01_0003_F05.b : ATGCTGGCCCTCTCGGGGTACATCCAGGCCTGCCGGGCGCTCATGATCACCGCCATCCTC


20110601C-004259 : CTGGGCTTCCTGGGCCTCTTCCTGGGCATGGTGGGGCTGCGCTGCACGAACATTGGGGGC
                   ---------+---------+---------+---------+---------+---------+ 527
CLNT1_0059_B01.b : CTGGGCTTCCTGGGCCTCTTCCTGGGCATGGTGGGGCTGCGCTGCACGAACATTGGGGGC
CLNT1_0034_D02.b : CTGGGCTTCCTGGGCCTCTTCCTGGGCATGGTGGGGCTGCGCTGCACGAACATTGGGGGC
CLNT1_0045_B07.b : CTGGGCTTCCTGGGCCTCTTCCTGGGCATGGTGGGGCTGCGCTGCACGAACATTGGGGGC
ITT01_0020_F06.b : CTGGGCTTCCTGGGCCTCTTCCTGGGCATGGTGGGGCTGCGCTGCACGAACATTGGGGGC
ITT01_0030_D04.b : CTGGGCTTCCTGGGCCTCTTCCTGGGCATGGTGGGGCTGCGCTGCACGAACATTGGGGGC
ITT01_0003_F05.b : CTGGGCTTCCTGGGCCTCTTCCTGGGCATGGTGGGGCTGCGCTGCACGAACATTGGGGGC


20110601C-004259 : CTGGAGCTCTCCAGGAAAACCAAGCTGGCGGCTACCGCAGGGGCCCTACACATACTGGCC
                   ---------+---------+---------+---------+---------+---------+ 587
CLNT1_0059_B01.b : CTGGAGCTCTCCAGGAAAACCAAGCTGGCGGCTACCGCAGGGGCCCTACACATACTGGCC
CLNT1_0034_D02.b : CTGGAGCTCTCCAGGAAAACCAAGCTGGCGGCTACCGCAGGGGCCCTACACATACTGGCC
CLNT1_0045_B07.b : CTGGAGCTCTCCAGGAAAACCAAGCTGGCGGCTACCGCAGGGGCCCTACACATACTGGCC
ITT01_0020_F06.b : CTGGAGCTCTCCAGGAAAACCAAGCTGGCGGCTACCGCAGGGGCCCTACACATACTGGCC
ITT01_0030_D04.b : CTGGAGCTCTCCAGGAAAACCAAGCTGGCGGCTACCGCAGGGGCCCTACACATACTGGCC
ITT01_0003_F05.b : CTGGAGCTCTCCAGGAAAACCAAGCTGGCGGCTACCGCAGGGGCCCTACACATACTGGCC


20110601C-004259 : GGGGTCTGCGGGATGGTGGCTATCTCCTGGTATGCCTTCAACATCACCCGGGACTTCTTC
                   ---------+---------+---------+---------+---------+---------+ 647
CLNT1_0059_B01.b : GGGGTCTGCGGGATGGTGGCTATCTCCTGGTATGCCTTCAACATCACCCGGGACTTCTTC
CLNT1_0034_D02.b : GGGGTCTGCGGGATGGTGGCTATCTCCTGGTATGCCTTCAACATCACCCGGGACTTCTTC
CLNT1_0045_B07.b : GGGGTCTGCGGGATGGTGGCTATCTCCTGGTATGCCTTCAACATCACCCGGGACTTCTTC
ITT01_0020_F06.b : GGGGTCTGCGGGATGGTGGCTATCTCCTGGTATGCCTTCAACATCACCCGGGACTTCTTC
ITT01_0030_D04.b : GGGGTCTGCGGGATGGTGGCTATCTCCTGGTATGCCTTCAACATCACCCGGGACTTCTTC
ITT01_0003_F05.b : GGGGTCTGCGGGATGGTGGCTATCTCCTGGTATGCCTTCAACATCACCCGGGACTTCTTC


20110601C-004259 : GACCCCTTGTATCCGGGGACCAAGTATGAGCTGGGCCCCGCGCTCTACCTGGGCTGGACC
                   ---------+---------+---------+---------+---------+---------+ 707
CLNT1_0059_B01.b : GACCCCTTGTATCCGGGGACCAAGTATGAGCTGGGCCCCGCGCTCTACCTGGGCTGGACC
CLNT1_0034_D02.b : GACCCCTTGTATCCGGGGACCAAGTATGAGCTGGGCCCCGCGCTCTACCTGGGCTGGACC
CLNT1_0045_B07.b : GACCCCTTGTATCCGGGGACCAAGTATGAGCTGGGCCCCGCGCTCTACCTGGGCTGGACC
ITT01_0020_F06.b : GACCCCTTGTATCCGGGGACCAAGTATGAGCTGGGCCCCGCGCTCTACCTGGGCTGGACC
ITT01_0030_D04.b : GACCCCTTGTATCCGGGGACCAAGTATGAGCTGGGCCCCGCGCTCTACCTGGGCTGGACC
ITT01_0003_F05.b : GACCCCTTGTATCCGGGGACCAAGTATGAGCTGGGCCCCGCGCTCTACCTGGGCTGGACC


20110601C-004259 : GCCTCCCTGCTCTCCATCCTGGGCGGCATCTGCCTCTGCTCCAGCTGCTGCTGCGCTCAG
                   ---------+---------+---------+---------+---------+---------+ 767
CLNT1_0059_B01.b : GCCTCCCTGCTCTCCATCCTGGGCGGCATCTGCCTCTGCTCCAGCTGCTGCTGCGCTCAN
CLNT1_0034_D02.b : GCCTCCCTGCTCTCCATCCTGGGCGGCATCTGCCTCTGCTCCAGCTGCTGCTGCGCTCAN
CLNT1_0045_B07.b : GCCTCCCTGCTCTCCATCCTGGGCGGCATCTGCCTCTGCTCCAGCTGCTGCTGCGCTCAG
ITT01_0020_F06.b : GCCTCCCTGCTCTCCATCCTGGGCGGCATCTGCCTCTGCTCCAGCTGCTGCTGCGCTCAN
ITT01_0030_D04.b : GCCTCCCTGCTCTCCATCCTGGGCGGCATCTGCCTCTGCTCCAGCTGCTGCTGCGCTCAG
ITT01_0003_F05.b : GCCTCCCTGCTCTCCATCCTGGGCGGCATCTGCCTCTGCTCCAGCTGCTGCTGCGCTCAN


20110601C-004259 : GACGACGACCCAGCAGCCAACGTCCGGGTTCCCTACAAGGCCCCGATGCCCGCCTCCAGC
                   ---------+---------+---------+---------+---------+---------+ 827
CLNT1_0059_B01.b : GACGACGACCCAGCAGCCAACGTCCGGGGTCCCTACAAGGCCCCGATGCCCGCCTCCAGC
CLNT1_0034_D02.b : GACGACGACCCAGCAGCCAACGTCCGGGTTCCCCTACAGGCCCCGATGCCCGCCTCCAGC
CLNT1_0045_B07.b : GACGACGACCCAGCAGCCAACGTCCGGGTTCCCTACAAGGCCCCGATGCCCCGCTCCAGC
ITT01_0020_F06.b : GACGACGACCCAGCAGCCAACGTCCGGGTTCCCTACAANGCCCCGATGCCCGCCTCCAGC
ITT01_0030_D04.b : GACGACGACCCAGCAGCCAACGTCCGGGTTCCCTACAAGGCCCCGATGCCCGCCTCCAGC
ITT01_0003_F05.b : GACGACGACCCAGCAGCCAACGTCCGGGTTCCCTACAANGCCCCGATGCCCGCCTCCAGC


20110601C-004259 : CTCACTGCCCGCTTGCCCGCCGTAGCCTCGGATGAAGACGGCGACAGCAGCTT*CGCCAG
                   ---------+---------+---------+---------+---------+---------+ 886
CLNT1_0059_B01.b : CTCACTGCCCGCTTGCCCNGCGTAGCCTCGGATGAAGACGGCGACAGCAGCTT*CGGCAA
CLNT1_0034_D02.b : CTCACTGCCCGCTTGCCCGCCGTAGCCTCGGATGAAGACGGCGACAGCAGCTT*TCGCAA
CLNT1_0045_B07.b : CTCACTGCCCGCTTGCCCGCCGTACCCTCGGATGAAGACGGCGACAGCAGCTT*CGCAAG
ITT01_0020_F06.b : CTCACTGCCCGCTTGCCCGCCGTAGCCTCGGATGAAGACGGCGACAGCAGCTTCGGCAAG
ITT01_0030_D04.b : CTCACTGCCCGCTTGGCCGCCGTAGCCTCGGATGAAGACNGCGACAGCAGCTTCNGCAAG
ITT01_0003_F05.b : CTCACTGCCCGCTTGCCCGCCGTAGCCTCGGATGAAGACNGCGACAGCAGCTTTCGGCAG


20110601C-004259 : TATGGGAAAAACGCTTACGTATAGGAGGCCTGGCCCGGTGGACACATTCGCTTCCTACTG
                   ---------+---------+---------+---------+---------+---------+ 946
CLNT1_0059_B01.b : GTATGGGAAAACGCTTACGTATAGGAGGGCTGGCCC*GTGGAACACATTCGCTCCTACTG
CLNT1_0034_D02.b : GTATGGGAAAAcgcttacgtataagaagcctggcccggtggaccacattcgcttctactg
CLNT1_0045_B07.b : TATGGGAAAAACGCTAACGTATAGGAAGCCTGGCCC*GTGAACACATTCGCCTTCTACTG
ITT01_0020_F06.b : TATGGGAAAAACGCTTACGTATAGGAGGCCTGGCCCCGTGGACACATTCGCTTCCTACTG
ITT01_0030_D04.b : TATGGGAAAAACGCTTACGTATAGGAGGCCTGGCCCGTGGNACACATTCGCNTCCTACTG
ITT01_0003_F05.b : TATGGGAAAAACGCTTACGTATNNAGAGCCTGGCCNNGTGGACACATTCGCTTCCTACTG


20110601C-004259 : CTCCCAGTGGAACCCCCGGGCTGCAGGCGCGGGTCCCTACTCCCTGGTAACAGCTCTGGG
                   ---------+---------+---------+---------+---------+---------+ 1006
CLNT1_0059_B01.b : CTCCCAGTGAACCCCCgggctgcaggcgcgggtccctactccctgtaccagctctgggcc
CLNT1_0034_D02.b : ctcccagtggacccccgggctgcaggggcgggtccctactccctgtacaagccctgggcc
CLNT1_0045_B07.b : CTCCCAGTGGACCCCCgggctgcaggcgcgntccctactcctgtaacagctctgggcccc
ITT01_0020_F06.b : CTCCCAGTGAANCCCCCGGGCTGCNAGCGCGGGTTCCTACTCCctgtaacagctctgggc
ITT01_0030_D04.b : CTCCCAGTGGAACCCCCGGGCTGCAGGCGCGGGTTCCTACTCCCTGNTAACAGCTCTGGG
ITT01_0003_F05.b : CTCCCAGTGGAACCCCCGGGCTGCANGCGCGGGTCCCTACTCCNNTGTAACAGCTCTGGG


20110601C-004259 : CCAGCCTTGCATCAG.............................................
                   ---------+---------+---------+---------+---------+---------+ 1021
CLNT1_0059_B01.b : aancttgcatcaggctccgccccatgcctggaccttcgcagttctggcttcagcccggct
CLNT1_0034_D02.b : caccctggattaggcttcgncccatgccctggagcctcccagatttgggttcaggcccgc
CLNT1_0045_B07.b : gcctgcatcagctccgcccatgcctgggacctcgcagctttgcttcaggcccgccttccg
ITT01_0020_F06.b : ccaccttgcatcaggctcgncccatgccctggaagctcgcagctctggctcaggccccgc
ITT01_0030_D04.b : CCcagncttgcatcaggctccgcccccatgcctgaagcctcgcagctctggctcaggccc
ITT01_0003_F05.b : CCAGCCTTGCATCAGgctccgcccatgncctggnagctcgcagctcgggctcaggccccg


20110601C-004259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1021
CLNT1_0059_B01.b : ccccgttggaaattcccctgggccaccctccgcggtgggccttggatcccctgggttaaa
CLNT1_0034_D02.b : cttcccggtcgaattccgccttggccaacctccgtggctgggccttggaaccccccggtt
CLNT1_0045_B07.b : gtcgacttcccctggccaacctcctcggtggccctctgacctcctggtaaaaaccaaaac
ITT01_0020_F06.b : ctccccgtcggactccgcctggccagcctcgtcggctgcctttggatcctcctggtaaaa
ITT01_0030_D04.b : gnnctcccggtcggagctcgccntgggcacgctccgtcggctgccctcggatcctcctgt
ITT01_0003_F05.b : ctccccgtcggactccgcctggccacgctcgtcgctggccctcggatcctctggtaaaaa


20110601C-004259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1021
CLNT1_0059_B01.b : acccaaaaaccggaaaatccctggcccggaaaagggccactaaaacctttaaatgggccg
CLNT1_0034_D02.b : aaaaccccaaaaccggaaaatcccctgggcccgaaatggaaccccgaaacttttgacctg
CLNT1_0045_B07.b : cccgaaactccctgggcccgaaaggacccctaaaccttaaatgggctcgggaaaaggggg
ITT01_0020_F06.b : accgacaccctgaactccctctgccctgaaatngaccatctacttctaatctgtcttggc
ITT01_0030_D04.b : taaaacccgacaccctgaaactccctcggccttgaaatgaacctcctaacttctgatctg
ITT01_0003_F05.b : cgaagaccctgaaacccctctggcctgaaatgaccacgtactttctaattggcttggcat


20110601C-004259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1021
CLNT1_0059_B01.b : ggaaaaaaggggggaaatcccccagggtttccgcgaaccctccaaaatttgtgggaaaaa
CLNT1_0034_D02.b : gcctgggcaaaaaggggtgggaaaaccccaaagtgttaccggaaaaacttctaaaaatgt
CLNT1_0045_B07.b : ggaattcccaatgttttcggaaaaatctaaattttttgaaaaaaaaaagaggcctgtggc
ITT01_0020_F06.b : ataaggggctgaaattcccagttttatccggtaacttccaaaaattgttaggaaaaaaaa
ITT01_0030_D04.b : ctttggcaatgcggggctgaaattccccagttttatccttaaaattccaagaatttgtag
ITT01_0003_F05.b : acgggcggaattcccaagtttttccgtaaactccaataattgttagaaaaaaaaaaaaaa


20110601C-004259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1021
CLNT1_0059_B01.b : aaaaagctggttccatggggccgccaaa                               
CLNT1_0034_D02.b : ttatgaaaaaaaaaaaaaccctgtttctattgtgggcggcccataa             
CLNT1_0045_B07.b : cgtggcggccctaaattaaaaaacccctccccacacaaaaaaaatgtgtttttttttttt
ITT01_0020_F06.b : aaagccattgccaactaggttggcccttaaatccccggggcaactaccaccctttttaag
ITT01_0030_D04.b : aaaaaaaaaaaggccatgttaattgggcgggccctaaattctcgggccaaataccacctt
ITT01_0003_F05.b : gccgtggtcattgagtgcccctaaatcccgggcccctccccccttttaaagcccatggtt


20110601C-004259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1021
CLNT1_0059_B01.b :                                                             
CLNT1_0034_D02.b :                                                             
CLNT1_0045_B07.b : tgtaaaaaccccttcaaaatttcttgggtggccactaatggcgcccc            
ITT01_0020_F06.b : ggccctagaggaataaaagggggccttataccgggg                       
ITT01_0030_D04.b : ttgaaaggccccaaggaaataaggggcccttttcactggaaaccatggtttta      
ITT01_0003_F05.b : aaaaggggcctttacctgggaaatcgggttgaaaattgggaaaaaccaaaaagaaaatta


20110601C-004259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1021
CLNT1_0059_B01.b :                                                             
CLNT1_0034_D02.b :                                                             
CLNT1_0045_B07.b :                                                             
ITT01_0020_F06.b :                                                             
ITT01_0030_D04.b :                                                             
ITT01_0003_F05.b : aggcaccccgggtt