[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-004267
Length:
940
Sequence:
[FASTA format sequence]
GTTAGTGGCC CGGATAATTA TGGCTACCCT CAAAGCGTCT GCGTTGCTGC GGAGCCTCCA
GACAAATTCT TGCGGCACGG GGCGGGTTTG TTTCCCGGTT CGCGCTCGGC CCCGGCCCCG
CGCCCTGCTC CAGCCTCTGC CCGGGGCCAG TGGGACGGGA ACACTATGCC GTGGGCTCGG
CTCCGAGTCC GAATCTGGCA ACTCAGAGAT CAGGAAGCCT ACATTTATGG ATGAGGAGGT
CCAAAACATA CTCATCAAGA TGACGGGCTT GGATTTGCAG AAGATTTTTA AGCCAGCTTT
ACAAGAACTG AAGCCACCAA CTTATAAGCT AATGACCCAA GCACAGCTGG AAGAGGCTAC
AAAACAGGCA GTAGAGGCAG CTAAAGTCCG ATTAAAAATG CCACCAGTTC TGGAAGAGCG
GGCTCCAATA AATGATGTGT TAGCTGAAGA TAAGATTTTG GAAGGAACAG AAACAGCCAA
ATATGTGTTT ACTGATATAT CATACAGCAT ACCACACCGG GAGCGTTTTA TTGTCGTCAG
AGAACCAAGT GGCACACTGC GCAAAGCCTC TTGGGAAGAA CGAGACCGAA TGATTCAAGT
TTATTTCCCA AGAGAAGGTC GTAGAATTTT AACACCAGTA ATTTTCAAGG AAGAAAATCT
TCAGACCATG TACAGCCAGG ACCAGCATGT TGATGTCCTC AATCTCTGCG TTGCCCAATT
TGAGCCAGAT TCTGCTGAAT ATATCAAAAT TCATCATCAC ACCTATGAAG ATATAGATAA
ATGTGGAAAG TATGACCTTT TACGTTCAAC AAGACACTTT GGTGGAATGG CTTGGTATTT
TGTAAATAAG AAAAAGATTG ATGGCTTACT GATTGACCAG ATTCAGAGAG ATTTAGTCAG
TGATGCCACC AGCTTGGTCC ACCTCTATCA CATCCTCCAT
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | MRPS22 | 28S ribosomal protein S22, mitochondrial [Homo sapiens]. | 450 | e-126 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | Mrps22 | 28S ribosomal protein S22, mitochondrial [Mus musculus]. | 439 | e-123 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC609331 | PREDICTED: similar to Mitochondrial 28S ribosomal protein S22 (S22mt) (MRP-S22) isoform 2 [Canis familiaris]. | 478 | e-135 | O |
![]() |
![]() | LOC609331 | PREDICTED: similar to Mitochondrial 28S ribosomal protein S22 (S22mt) (MRP-S22) isoform 1 [Canis familiaris]. | 473 | e-134 | O |
![]() |
![]() | LOC477924 | PREDICTED: similar to Mitochondrial 28S ribosomal protein S22 (S22mt) (MRP-S22) [Canis familiaris]. | 456 | e-128 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | MRPS22 | 28S ribosomal protein S22, mitochondrial [Bos taurus]. | 478 | e-135 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC100158122 | PREDICTED: 28S ribosomal protein S22, mitochondrial [Sus scrofa]. | 551 | e-157 | O |
|
|
20110601C-004267 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVR01_0102_B07.b : cttttggtgccnxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPL01_0064_D12.b : nnggggctaggacttanacxxxxxxxxxxxxxxxxxxxxxxx
LNG01_0023_G07.b : gcattatgctgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
UTR01_0096_G05.b : nnccgcttggactataacxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0061_H09.b : agttgtcatxxxxxxxxxx
20110601C-004267 : .........................GTTAGTGGCCCGGATAATTATGGCTACCCTCAAAG
---------+---------+---------+---------+---------+---------+ 35
LVR01_0102_B07.b : xxxxxxxxxxxxxxxxxxxxxxxxxGTTAGTGGCCCGGATAATTATGGCTACCCTCAAAG
SPL01_0064_D12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAATTATGGCTACCCTCAAAG
LNG01_0023_G07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAATTATGGCTACCCTCAAAG
UTR01_0096_G05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxggaTAATTATGGCTACCCTCAAAG
OVRM1_0061_H09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTATGGCTACCCTCAAAG
20110601C-004267 : CGTCTGCGTTGCTGCGGAGCCTCCAGACAAATTCTTGCGGCACGGGGCGGGTTTGTTTCC
---------+---------+---------+---------+---------+---------+ 95
LVR01_0102_B07.b : CGTCTGCGTTGCTGCGGAGCCTCCAGACAAATTCTTGCGGCACGGGGCGAGTTTGTTTCC
SPL01_0064_D12.b : CGTCTGCGTTGCTGCGGAGCCTCCAGACAAATTCTTGCGGCACGGGGCGGGTTTGTTTCC
LNG01_0023_G07.b : CGTCTGCGTTGCTGCGGAGCCTCCAGACAAATTCTTGCGGCACGGGGCGGGTTTGTTTCC
UTR01_0096_G05.b : CGTCTGCGTTGCTGCGGAGCCTCCAGACAAATTCTTGCGGCACGGGGCGGGTTTGTTTCC
OVRM1_0061_H09.b : CGTCTGCGTTGCTGCGGAGCCTCCAGACAAATTCTTGCGGCACGGGGCGGGTTTGTTTCC
20110601C-004267 : CGGTTCGCGCTCGGCCCCGGCCCCGCGCCCTGCTCCAGCCTCTGCCCGGGGCCAGTGGGA
---------+---------+---------+---------+---------+---------+ 155
LVR01_0102_B07.b : CGGTTCGCGCTCGGCCCCGGCCCCGCGCCCTGCTCCAGCCTCTGCCCGGGGCCTGTGGGA
SPL01_0064_D12.b : CGGTTCGCGCTCGGCCCCGGCCCCGCGCCCTGCTCCAGCCTCTGCCCGGGGCCAGTGGGA
LNG01_0023_G07.b : CGGTTCGCGCTCGGCCCCGGCCCCGCGCCCTGCTCCAGCCTCTGCCCGGGGCCAGTGGGA
UTR01_0096_G05.b : CGGTTCGCGCTCGGCCCCGGCCCCGCGCCCTGCTCCAGCCTCTGCCCGGGGCCAGTGGGA
OVRM1_0061_H09.b : CGGTTCGCGCTCGGCCCCGGCCCCGCGCCCTGCTCCAGCCTCTGCCCGGGGCCTGTGGGA
20110601C-004267 : CGGGAACACTATGCCGTGGGCTCGGCTCCGAGTCCGAATCTGGCAACTCAGAGATCAGGA
---------+---------+---------+---------+---------+---------+ 215
LVR01_0102_B07.b : CGGGAACACTATGCCGTGGGCTCGGCTCCGAGTCCGAATCTGGCAACTCAGAGATCAGGA
SPL01_0064_D12.b : CGGGAACACTATGCCGTGGGCTCGGCTCCGAGTCCGAATCTGGCAACTCAGAGATCAGGA
LNG01_0023_G07.b : CGGGAACACTATGCCGTGGGCTCGGCTCCGAGTCCGAATCTGGCAACTCAGAGATCAGGA
UTR01_0096_G05.b : CGGGAACACTATGCCGTGGGCTCGGCTCCGAGTCCGAATCTGGCAACTCAGAGATCAGGA
OVRM1_0061_H09.b : CGGGAACACTATGCCGTGGGCTCGGCTCCGAGTCCGAATCTGGCAACTCAGAGATCAGGA
20110601C-004267 : AGCCTACATTTATGGATGAGGAGGTCCAAAACATACTCATCAAGATGACGGGCTTGGATT
---------+---------+---------+---------+---------+---------+ 275
LVR01_0102_B07.b : AGCCTACATTTATGGATGAGGAGGTCCAAAACATACTCATCAAGATGACGGGCTTGGATT
SPL01_0064_D12.b : AGCCTACATTTATGGATGAGGAGGTCCAAAACATACTCATCAAGATGACGGGCTTGGATT
LNG01_0023_G07.b : AGCCTACATTTATGGATGAGGAGGTCCAAAACATACTCATCAAGATGACGGGCTTGGATT
UTR01_0096_G05.b : AGCCTACATTTATGGATGAGGAGGTCCAAAACATACTCATCAAGATGACGGGCTTGGATT
OVRM1_0061_H09.b : AGCCTACATTTATGGATGAGGAGGTCCAAAACATACTCATCAAGATGACGGGCTTGGATT
20110601C-004267 : TGCAGAAGATTTTTAAGCCAGCTTTACAAGAACTGAAGCCACCAACTTATAAGCTAATGA
---------+---------+---------+---------+---------+---------+ 335
LVR01_0102_B07.b : TGCAGAAGATTTTTAAGCCAGCTTTACAAGAACTGAAGCCACCAACTTATAAGCTAATGA
SPL01_0064_D12.b : TGCAGAAGATTTTTAAGCCAGCTTTACAAGAACTGAAGCCACCAACTTATAAGCTAATGA
LNG01_0023_G07.b : TGCAGAAGATTTTTAAGCCAGCTTTACAAGAACTGAAGCCACCAACCTATAAGCTAATGA
UTR01_0096_G05.b : TGCAGAAGATTTTTAAGCCAGCTTTACAAGAACTGAAGCCACCAACTTATAAGCTAATGA
OVRM1_0061_H09.b : TGCAGAAGATTTTTAAGCCAGCTTTACAAGAACTGAAGCCACCAACTTATAAGCTAATGA
20110601C-004267 : CCCAAGCACAGCTGGAAGAGGCTACAAAACAGGCAGTAGAGGCAGCTAAAGTCCGATTAA
---------+---------+---------+---------+---------+---------+ 395
LVR01_0102_B07.b : CCCAAGCACAGCTGGAAGAGGCTACAAAACAGGCAGTAGAGGCAGCTAAAGTCCGATTAA
SPL01_0064_D12.b : CCCAAGCACAGCTGGAAGAGGCTACAAAACAGGCAGTAGAGGCAGCTAAAGTCCGATTAA
LNG01_0023_G07.b : CCCAAGCACAGCTGGAAGAGGCTACAAAACAGGCAGTAGAGGCAGCTAAAGTCCGATTAA
UTR01_0096_G05.b : CCCAAGCACAGCTGGAAGAGGCTACAAAACAGGCAGTAGAGGCAGCTAAAGTCCGATTAA
OVRM1_0061_H09.b : CCCAAGCACAGCTGGAAGAGGCTACAAAACAGGCAGTAGAGGCAGCTAAAGTCCGATTAA
20110601C-004267 : AAATGCCACCAGTTCTGGAAGAGCGGGCTCCAATAAATGATGTGTTAGCTGAAGATAAGA
---------+---------+---------+---------+---------+---------+ 455
LVR01_0102_B07.b : AAATGCCACCAGTTCTGGAAGAGCGGGCTCCAATAAATGATGTGTTAGCTGAAGATAAGA
SPL01_0064_D12.b : AAATGCCACCAGTTCTGGAAGAGCGGGCTCCAATAAATGATGTGTTAGCTGAAGATAAGA
LNG01_0023_G07.b : AAATGCCACCAGTTCTGGAAGAGCGGGCTCCAATAAATGATGTGTTAGCTGAAGATAAGA
UTR01_0096_G05.b : AAATGCCACCAGTTCTGGAAGAGCGGGCTCCAATAAATGATGTGTTAGCTGAAGATAAGA
OVRM1_0061_H09.b : AAATGCCACCAGTTCTGGAAGAGCGGGCTCCAATAAATGATGTGTTAGCTGAAGATAAGA
20110601C-004267 : TTTTGGAAGGAACAGAAACAGCCAAATATGTGTTTACTGATATATCATACAGCATACCAC
---------+---------+---------+---------+---------+---------+ 515
LVR01_0102_B07.b : TTTTGGAAGGAACAGAAACAGCCAAATATGTGTTTACTGATATATCATACAGCATACCAC
SPL01_0064_D12.b : TTTTGGAAGGAACAGAAACAGCCAAATATGTGTTTACTGATATATCATACAGCATACCAC
LNG01_0023_G07.b : TTTTGGAAGGAACAGAAACAGCCAAATATGTGTTTACTGATATATCATACAGCATACCAC
UTR01_0096_G05.b : TTTTGGAAGGAACAGAAACAGCCAAATATGTGTTTACTGATATATCATACAGCATACCAC
OVRM1_0061_H09.b : TTTTGGAAGGAACAGAAACAGCCNAATATGTGTTTACTGATATATCATACAGCATACCAC
20110601C-004267 : ACCGGGAGCGTTTTATTGTCGTCAGAGAACCAAGTGGCACACTGCGCAAAGCCTCTTGGG
---------+---------+---------+---------+---------+---------+ 575
LVR01_0102_B07.b : ACCGGGAGCGTTTTATTGTCGTCAGAGAACCAAGTGGCACACTGCGCAAAACCTCTTGGG
SPL01_0064_D12.b : ACCGGGAGCGTTTTATTGTCGTCAGAGAACCAAGTGGCACACTGCGCAAAGCCTCTTGGG
LNG01_0023_G07.b : ACCGGGAGCGTTTTATTGTCGTCAGAGAACCAAGTGGCACACTGCGCAAAGCCTCTTGGG
UTR01_0096_G05.b : ACCGGGAGCGTTTTATTGTCGTCAGAGAACCAAGTGGCACACTGCGCAAAGCCTCTTGGG
OVRM1_0061_H09.b : ACCGGGAGCGTTTTATTGTCGTCAGAGAACCAAGTGGCACACTGCGCANAGCCTCTTGGG
20110601C-004267 : AAGAACGAGACCGAATGATTCAAGTTTATTTCCCAAGAGAAGGTCGTAGAATTTTAACAC
---------+---------+---------+---------+---------+---------+ 635
LVR01_0102_B07.b : AAGAACGAGACCGAATGATTCAAGTTTATTTCCCAAGAGAAGGTCGTAGAATTTTAACAC
SPL01_0064_D12.b : AAGAACGAGACCGAATGATTCAAGTTTATTTCCCAAGAGAAGGTCGTAGAATTTTAACAC
LNG01_0023_G07.b : AAGAACGAGACCGAATGATTCAAGTTTATTTCCCAAGAGAAGGTCGTAGAATTTTAACAC
UTR01_0096_G05.b : AAGAACGAGACCGAATGATTCAAGTTTATTTCCCAAGAGAAGGTCGTAGAATTTTAACAC
OVRM1_0061_H09.b : AAGAACGAGACCGAATGATTCAAGTTTATTTCCCAAGAGAAGGTCGTAGAATTTTAACAC
20110601C-004267 : CAGTAATTTTCAAGGAAGAAAATCTTCAGACCATGTACAGCCAGGACCAGCATGTTGATG
---------+---------+---------+---------+---------+---------+ 695
LVR01_0102_B07.b : CAGTAATTTTCAAGGAAGAAAATCTTCAGACCATGTACAGCCAGGACCAGCATGTTGATG
SPL01_0064_D12.b : CAGTAATTTTCAAGGAAGAAAATCTTCAGACCATGTACAGCCAGGACCAGCATGTTGATG
LNG01_0023_G07.b : CAGTAATTTTCAAGGAAGAAAATCTTCAGACCATGTACAGCCAGGACCAGCATGTTGATG
UTR01_0096_G05.b : CAGTAATTTTCAAGGAAGAAAATCTTCAGACCATGTACAGCCAGGACCAGCATGTTGATG
OVRM1_0061_H09.b : CAGTAATTTTCAAGGAAGAAAATCTTCAGACCATGTACAGCCAGGACCAGCATGTTGATG
20110601C-004267 : TCCTCAATCTCTGCGTTGCCCAATTTGAGCCAGATTCTGCTGAATATATCAAAATTCATC
---------+---------+---------+---------+---------+---------+ 755
LVR01_0102_B07.b : TCCTCAATCTCTGCGTTGCCCAATTTGAGCCAGATTCTGCTGAATATATCAAAATTCATC
SPL01_0064_D12.b : TCCTCCATCTCTGCGTTGCCCAATTTGAGCCAGATTCTGCTGAATATATCAAAATTCATC
LNG01_0023_G07.b : TCCTCAATCTCTGCGTTGCCCAATTTGAGCCAGATTCTGCTGAATATATCAAAATTCATC
UTR01_0096_G05.b : TCCTCAATCTCTGCGTTGCCCAATTTGAGCCAGATTCTGCTGAATATATCAAAATTCATC
OVRM1_0061_H09.b : TCCTCAATCTCTGCGTTGCCCAATTTGAGCCAGATTCTGCTGAATATATCANAATTCATC
20110601C-004267 : ATCACACCTATGAAGATATAGATAAA*TGTGGAAAGTATGACCTTTTACGTTCAACAAGA
---------+---------+---------+---------+---------+---------+ 814
LVR01_0102_B07.b : ATCACACCTATGAAGATATAGATAAAATGTGGAAAGTATGACCTTTTACGTTCAACAAGA
SPL01_0064_D12.b : ATCACACCTATGAAGATATAGATAAA*TGTGGAAAagtatgaccttttttagtttcaaca
LNG01_0023_G07.b : ATCACACCTATGAAGATATAGATAAA*TGTGGAAAGTATGACCTTTTACGTTCAACAAGA
UTR01_0096_G05.b : ATCACACCTATGAAGATATAGATAAA*TGTGGAAAGTATGACCTTTTACGTTCAACAAGA
OVRM1_0061_H09.b : ATCACACCTATTAAGATATAGATNAA*TGTGGAAAGTATGACCTTT
20110601C-004267 : CACTTTGGTGG**AATGGCTTGGTATTTTGTAAATAA*GAAAAAGATTGATGGCTTACTG
---------+---------+---------+---------+---------+---------+ 871
LVR01_0102_B07.b : CACTTTGGTGGGAAATGGCTTGGTATTTTGTAAATAAAGAAAAAGATTGATGGCTTACTG
SPL01_0064_D12.b : aaacactttggggggaaagggcttggtattttggtaaataagaaaaaaaaatgaatgggc
LNG01_0023_G07.b : CACTTTGGTGG**AATGGCTTGGTATTTTGTAAATAA*GAAAAAGATTGATGGCTTACTG
UTR01_0096_G05.b : CACTTTGGTGG**AATGGCTTGNTATTTTGTAAATAA*GAAAAAGATTGATGGCTTACTG
OVRM1_0061_H09.b :
20110601C-004267 : ATTGACCAGA**TTCAGAGAGATTTAGTCAGTGATGCCACCAGCTTGGTCCACCTCTATC
---------+---------+---------+---------+---------+---------+ 929
LVR01_0102_B07.b : ATTGACCAGATTTTCAGAGAGATTTAGTCAGTGATGCCACCAGCCTGGgtccacctctat
SPL01_0064_D12.b : ttactggattgaccccgaattccgaagagaattttagtccaggggaggccccccagcctt
LNG01_0023_G07.b : ATTGACCAGA**TTCAGAGAGATTTAGTCAGTGATGCCACCAGCTTGGTCCACCTCTATC
UTR01_0096_G05.b : ATTGACCAGA**TTCAGAGAGATTTAGTCAGTGATGCCACCAGCTTGGTCCACCTCAATC
OVRM1_0061_H09.b :
20110601C-004267 : ACATCCTCCAT.................................................
---------+---------+---------+---------+---------+---------+ 940
LVR01_0102_B07.b : cacatccctccttccaaacggtcagtccacctccagaagcccaaaaaaccagggtgcctg
SPL01_0064_D12.b : tggttccaccctcttttcaaaatccctcccattccaaaaaggggtcaagttcacgcttca
LNG01_0023_G07.b : ACATCCTCCATccagacgggtcagtccgctcaagaggccaaaaaacaaggtggctgaggg
UTR01_0096_G05.b : ACATCCTCCATccagaccgtcagtcagctcaagagcccaaaagcagggtgctgagggatt
OVRM1_0061_H09.b :
20110601C-004267 : ............................................................
---------+---------+---------+---------+---------+---------+ 940
LVR01_0102_B07.b : aagggaatttcttttaatttaagggcctttgccaaaaacaaaaaaccacaaaaaggggaa
SPL01_0064_D12.b : ggaagggcccaaaataaccagggggtggccttaaagggaatttcaccttttttatttta
LNG01_0023_G07.b : attacattttatttaaggtcctttgcaaaaacagaaagcccagaaaggaaaccatatatt
UTR01_0096_G05.b : acatttaataaagtcttttccaaaaccgaagccccggagggaggctatttagaattaacc
OVRM1_0061_H09.b :
20110601C-004267 : ............................................................
---------+---------+---------+---------+---------+---------+ 940
LVR01_0102_B07.b : gccattttttagaaaatttaaacccctgccaaacccttttttcaaaaaaaaacccatttc
SPL01_0064_D12.b :
LNG01_0023_G07.b : gaaattaacccttggcaagcttaatcaaaaaacccattcctttaccccttttccggcacc
UTR01_0096_G05.b : tggcagcttatcagaaaacatcctttaccctttcggcacttcctaaaaatatttttcctt
OVRM1_0061_H09.b :
20110601C-004267 : ............................................................
---------+---------+---------+---------+---------+---------+ 940
LVR01_0102_B07.b : cttttatcccccacctttttttgggcccccccttttccccctaaaaaaaaaaaaaatttt
SPL01_0064_D12.b :
LNG01_0023_G07.b : cttccctaaaaaaaaaatttttttttcttttttttttcacccgctggtgccccccaacaa
UTR01_0096_G05.b : tttcccctgga
OVRM1_0061_H09.b :
20110601C-004267 : ............................................................
---------+---------+---------+---------+---------+---------+ 940
LVR01_0102_B07.b : ttttttttttctcttttttttttt
SPL01_0064_D12.b :
LNG01_0023_G07.b : ccccacaaaaaaattgggggaaaaaaattttttttttgtggggggggg
UTR01_0096_G05.b :
OVRM1_0061_H09.b :