[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-004278
Length:
668
Sequence:
[FASTA format sequence]
GCTTCTGCGC CTTTCCCTGC CGCTGAGTGG CCGCTTCCCT CCGGTGGGTT TTCCGCGGGG
CGCCGGGGAG GCTGGGCCCG GGGGCCAAGA TGGAGTTGGT GCAGGTCCTG AGGCGCGGGC
TGCAGCAGGT CAGCGGCCAC GGCGGCCTCC GCGGCTACCT ACGGGTTCTC TTCAGGGCAA
ACGATGTGAG AGTTGGAACC TTAGTAGGGG AGGACAAATA CGGAAACAAA TACTATGAAG
ACAACAAGCA GTTTTTTGGC CGTCACCGGT GGGTTATATA TACTACTGAG ATGAATGGCA
GAGACACCTT CTGGGATGTA GATGGAAGCA TGGTGCCCCC GGAATGGCAT CGTTGGCTTC
ATTGTATGAC TGATGATCCT CCAACAACAA AACCACCTAC TGCTCGTAAA TACATTTGGA
CAAACCATAA ATTCAACGTG AGTGGCACTC CACAGCAGTA CGTACCCTAT TCCACCACTA
GAAAGAAGAT TCAGGAGTGG GTCCCACCTT CAACACCTTA CAAGTAAAGA GAACGAAAAA
CAATTTAAAG ATGTAAAATA AGAGGCTTTT CCTATAATTG CGCCTTCATT ACTTACTGTT
ACCTTGATTA AAATTATTTG ATTAAAAAAA AAAAAAAAAA AAAAAAAAAA ANAAAAAAAA
AAAAAAAA
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | NDUFA12 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Homo sapiens]. | 271 | 5e-73 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| Ndufa12 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Mus musculus]. | 271 | 2e-73 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC475428 | PREDICTED: similar to 13kDa differentiation-associated protein [Canis familiaris]. | 278 | 2e-75 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| NDUFA12 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Bos taurus]. | 283 | 1e-76 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC100518016 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like isoform 1 [Sus scrofa]. | 291 | 3e-79 | O |
|
| LOC100518016 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like isoform 2 [Sus scrofa]. | 186 | 1e-47 | O |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
20110601C-004278 : ..........................................................GC
---------+---------+---------+---------+---------+---------+ 2
HTMT1_0118_B01.b : tttggatagtacgcggccgtaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGC
HTMT1_0039_C02.b : ttttacgcgagaagaggccxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CBLT1_0035_G02.b : ttttagcaggttacacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CBLT1_0045_H08.b : ttttggacagtagaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
HTMT1_0036_B06.b : gacgg
HTMT1_0070_C05.b :
20110601C-004278 : TTCTGCGCCTTTCCCTGCCGCTGAGTGGCCGCTTCCCTCCGGTGGGTTTTCCG*CGGGGC
---------+---------+---------+---------+---------+---------+ 61
HTMT1_0118_B01.b : TTCTGCGCCTTTCCCTGCCGCTGAGTGGCCGCTTCCCTCCGGTGGGTTTTCCTTCGGGGC
HTMT1_0039_C02.b : xxxxxxxxggcTCCCTGCCGCTGAGTGGCCGCTTCCCTCCGGTGGGTTTTCCG*CGGTGC
CBLT1_0035_G02.b : xxxxxxxxxxxxxxxxxxxxCTGAGTGGCCGCTTCCCTCCGGTGGGTTTTCCG*CGGGGC
CBLT1_0045_H08.b : xxxxxxxxxxxxxxxxxxxxCTGAGTGCCCTCTTCCCTCCGGTGGGTTTTCCG*CGGGGC
HTMT1_0036_B06.b : tacgacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxggcg*cggggc
HTMT1_0070_C05.b : ttttccgacggtagaggccgtaxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-004278 : GCCGGGGAGGCTGGGCCCGGGGGCCAAGATGGAGTTGGTGCAGGTCCTGAGGCGCGGGCT
---------+---------+---------+---------+---------+---------+ 121
HTMT1_0118_B01.b : GCCGGGGAGGCTGGGCCCGGGGGCCAAGATGGAGTTGGTGCAGGTCCTGAGGCGCGGGCT
HTMT1_0039_C02.b : GCCGGGGAGGCTGGGCCCGGGGGCCAAGATGGAGTTGGTGCAGGTCCTGAGGCGCGGGCT
CBLT1_0035_G02.b : GCCGGGGAGGCTGGGCCCGGGGGCCAAGATGGAGTTGGTGCAGGTCCTGAGGCGCGGGCT
CBLT1_0045_H08.b : GCCGGGGAGGCTGGGCCCGGGGGCCAAGATGGAGTTGGTGCAGGTCCTGAGGCGCGGGCT
HTMT1_0036_B06.b : gccggggaggcggggcccgggggccAAGATGGAGTTGGTGCAGGTCCTGAGGCGCGGGCT
HTMT1_0070_C05.b : xxxxxxxxxxxxxxxxxxxxGGGCCAAGATGGAGTTGGTGCAGGTCCTGAGGCGCGGGCT
20110601C-004278 : GCAGCAGGTCAGCGGCCACGGCGGCCTCCGCGGCTACCTACGGGTTCTCTTCAGGGCAAA
---------+---------+---------+---------+---------+---------+ 181
HTMT1_0118_B01.b : GCAGCAGGTCAGCGGCCACGGCGGCCTCCGCGGCTACCTACGGGTTCTCTTCAGGGCAAA
HTMT1_0039_C02.b : GCAGCAGGTCAGCGGCCACGGCGGCCTCCGCGGCTACCTACGGGTTCTCTTCAGGGCAAA
CBLT1_0035_G02.b : GCAGCAGGTCAGCGGCCACGGCGGCCTCCGCGGCTACCTACGGGTTCTCTTCAGGGCAAA
CBLT1_0045_H08.b : GCAGCAGGTCAGCGGCCACGGCGGCCTCCGCGGCTACCTACGGGTTCTCTTCAGGGCAAA
HTMT1_0036_B06.b : GCAGCAGGTCAGCGGCCACGGCGGCCTCCGCGGCTACCTACGGGTTCTCTTCAGGGCAAA
HTMT1_0070_C05.b : GCAGCAGGTCAGCGGCCACGGCGGCCTCCGCGGCTACCTACGGGTTCTCTTCAGGGCAAA
20110601C-004278 : CGATGTGAGAGTTGGAACCTTAGTAGGGGAGGACAAATACGGAAACAAATACTATGAAGA
---------+---------+---------+---------+---------+---------+ 241
HTMT1_0118_B01.b : CGATGTGAGAGTTGGAACCTTAGTAGGGGAGGACAAATACGGAAACAAATACTATGAAGA
HTMT1_0039_C02.b : CGATGTGAGAGTTGGAACCTTAGTAGGGGAGGACAAATACGGAAACAAATACTATGAAGA
CBLT1_0035_G02.b : CGATGTGAGAGTTGGAACCTTAGTAGGGGAGGACAAATACGGAAACAAATACTATGAAGA
CBLT1_0045_H08.b : CGATGTGAGAGTTGGAACCTTAGTAGGGGAGGACAAATACGGAAACAAATACTATGAAGA
HTMT1_0036_B06.b : CGATGTGAGAGTTGGAACCTTAGTAGGGGAGGACAAATACGGAAACAAATACTATGAAGA
HTMT1_0070_C05.b : CGATGTGAGAGTTGGAACCTTAGTAGGGGAGGACAAATACGGAAACAAATACTATGAAGA
20110601C-004278 : CAACAAGCAGTTTTTTGGCCGTCACCGGTGGGTTATATATACTACTGAGATGAATGGCAG
---------+---------+---------+---------+---------+---------+ 301
HTMT1_0118_B01.b : CAACAAGCAGTTTTTTGGCCGTCACCGGTGGGTTATATATACTACTGAGATGAATGGCAG
HTMT1_0039_C02.b : CAACAAGCAGTTTTTTGGCCGTCACCGGTGGGTTATATATACTACTGAGATGAATGGCAG
CBLT1_0035_G02.b : CAACAAGCAGTTTTTTGGCCGTCACCGGTGGGTTATATATACTACTGAGATGAATGGCAG
CBLT1_0045_H08.b : CAACAAGCAGTTTTTTGGCCGTCACCGGTGGGTTATATATACTACTGAGATGAATGGCAG
HTMT1_0036_B06.b : CAACAAGCAGTTTTTTGGCCGTCACCGGTGGGTTATATATACTACTGAGATGAATGGCAG
HTMT1_0070_C05.b : CAACAAGCAGTTTTTTGGCCGTCACCGGTGGGTTATATATACTACTGAGATGAATGGCAG
20110601C-004278 : AGACACCTTCTGGGATGTAGATGGAAGCATGGTGCCCCCGGAATGGCATCGTTGGCTTCA
---------+---------+---------+---------+---------+---------+ 361
HTMT1_0118_B01.b : AGACACCTTCTGGGATGTAGATGGAAGCATGGTGCCCCCGGAATGGCATCGTTGGCTTCA
HTMT1_0039_C02.b : AGACACCTTCTGGGATGTAGATGGAAGCATGGTGCCCCCGGAATGGCATCGTTGGCTTCA
CBLT1_0035_G02.b : AGACACCTTCTGGGATGTAGATGGAAGCATGGTGCCCCCGGAATGGCATCGTTGGCTTCA
CBLT1_0045_H08.b : AGACACCTTCTGGGATGTAGATGGAAGCATGGTGCCCCCGGAATGGCATCGTTGGCTTCA
HTMT1_0036_B06.b : AGACACCTTCTGGGATGTAGATGGAAGCATGGTGCCCCCGGAATGGCATCGTTGGCTTCA
HTMT1_0070_C05.b : AGACACCTTCTGGGATGTAGATGGAAGCATGGTGCCCCCGGAATGGCATCGTTGGCTTCA
20110601C-004278 : TTGTATGACTGATGATCCTCCAACAACAAAACCACCTACTGCTCGTAAATACATTTGGAC
---------+---------+---------+---------+---------+---------+ 421
HTMT1_0118_B01.b : TTGTATGACTGATGATCCTCCAACAACAAAACCACCTACTGCTCGTAAATACATTTGGAC
HTMT1_0039_C02.b : TTGTATGACTGATGATCCTCCAACAACAAAACCACCTACTGCTCGTAAATACATTTGGAC
CBLT1_0035_G02.b : TTGTATGACTGATGATCCTCCAACAACAAAACCACCTACTGCTCGTAAATACATTTGGAC
CBLT1_0045_H08.b : TTGTATGACTGATGATCCTCCAACAACAAAACCACCTACTGCTCGTAAATACATTTGGAC
HTMT1_0036_B06.b : CTGTATGACTGATGATCCTCCAACAACAAAACCACCTACTGCTCGTAAATACATTTGGAC
HTMT1_0070_C05.b : CTGTATGACTGATGATCCTCCAACAACAAAACCACCTACTGCTCGTAAATACATTTGGAC
20110601C-004278 : AAACCATAAATTCAACGTGAGTGGCACTCCACAGCAGTACGTACCCTATTCCACCACTAG
---------+---------+---------+---------+---------+---------+ 481
HTMT1_0118_B01.b : AAACCATAAATTCAACGTGAGTGGCACTCCACAGCAGTACGTACCCTATTCCACCACTAG
HTMT1_0039_C02.b : AAACCATAAATTCAACGTGAGTGGCACTCCACAGCAGTACGTACCCTATTCCACCACTAG
CBLT1_0035_G02.b : AAACCATAAATTCAACGTGAGTGGCACTCCACAGCAGTACGTACCCTATTCCACCACTAG
CBLT1_0045_H08.b : AAACCATAAATTCAACGTGAGTGGCACTCCACAGCAGTACGTACCCTATTCCACCACTAG
HTMT1_0036_B06.b : AAACCATAAATTCAACGTGAGTGGCACTCCACAGCAGTACGTACCCTATTCCACCACTAG
HTMT1_0070_C05.b : AAACCATAAATTCAACGTGAGTGGCACTCCACAGCAGTACGTACCCTATTCCACCACTAG
20110601C-004278 : AAAGAAGATTCAGGAGTGGGTCCCACCTTCAACACCTTACAAGTAAAGAGAACGAAAAAC
---------+---------+---------+---------+---------+---------+ 541
HTMT1_0118_B01.b : AAAGAAGATTCAGGAGTGGGTCCCACCTTCAACACCTTACAAGTAAAGAGAACGAAAAAC
HTMT1_0039_C02.b : AAAGAAGATTCAGGAGTGGGTCCCACCTTCAACACCTTACAAGTAAAGAGAACGAAAAAC
CBLT1_0035_G02.b : AAAGAAGATTCAGGAGTGGGTCCCACCTTCAACACCTTACAAGTAAAGAGAACGAAAAAC
CBLT1_0045_H08.b : AAAGAAGATTCAGGAGTGGGTCCCACCTTCAACACCTTACAAGTAAAGAGAACGAAAAAC
HTMT1_0036_B06.b : AAAGAAGATTCAGGAGTGGGTCCCACCTTCAACACCTTACAAGTAAAGAGAACGAAAAAC
HTMT1_0070_C05.b : AAAGAAGATTCAGGAGTGGGTCCCACCTTCAACACCTTACAAGTAAAGAGAACGAAAAAC
20110601C-004278 : AATTTAAAGATGTAAAATAAGAGGCTTTTCCTATAATTGCGCCTTCATTACTTACTGTTA
---------+---------+---------+---------+---------+---------+ 601
HTMT1_0118_B01.b : AATTTAAAGATGTAAAATAAGAGGCTTTTCCTATAATTGCGCCTTCATTACTTACTGTTA
HTMT1_0039_C02.b : AATTTAAAGATGTAAAATAAGAGGCTTTTCCTATAATTGCGCCTTCATTACTTACTGTTA
CBLT1_0035_G02.b : AATTTAAAGATGTAAAATAAGAGGCTTTTCCTATAATTGCGCCTTCATTACTTACTGTTA
CBLT1_0045_H08.b : AATTTAAAGATGTAAAATAAGAGGCTTTTCCTATAATTGCGCCTTCATTACTTACTGTTA
HTMT1_0036_B06.b : AATTTAAAGATGTAAAATAAGAGGCTTTTCCTATAATTGCGCCTTCATTACTTACTGTTA
HTMT1_0070_C05.b : AATTTAAAGATGTAAAATAAGAGGCTTTTCCTATAATTGCGCCTTCATTACTTACTGTTA
20110601C-004278 : CCTTGATTAAAATTATTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAA
---------+---------+---------+---------+---------+---------+ 661
HTMT1_0118_B01.b : CCTTGATTAAAATTATTTGATTANGCNNaananaaaaaaaaaaaaanaaaaaaaaaaaaa
HTMT1_0039_C02.b : CCTTGattaaaattatttgattaaaaaaaaaaa
CBLT1_0035_G02.b : CCTTGATTAAAATTATTTGATTAAAA
CBLT1_0045_H08.b : CCTTGATTAAAATTATTTGATTannaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaa
HTMT1_0036_B06.b : CCTTGattaaaattatttgattaaaaaaaaaaaaaaaa
HTMT1_0070_C05.b : CCTTGattaaaattatttgattaaaaaaaaaaaaaaaaa
20110601C-004278 : AAAAAAA.....................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : naaaannnaaanannaannaaaaaaccgcggccccggaacccccttatggggggttattg
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : aaaaaaaaaanannnnnnnnnnnnnnatannnttcccgggggggggaaatctcctttggg
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : gttcccccaatgataaaaaacttttttgatttggtgccaccccccccaaaatgcggggaa
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : ggggggttaggcgcccccaaataggaaaaacactcttgttggtttggacaaacccacaac
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : aaaagcccttcttttgaaaattagggaacgcaatcccttttttttaaccactaaacccga
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : attaaggaggaaaaaaactggctttattgcgtaaatttgggagcctttctctttgtttaa
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : caacaaaaattatcacccccatttcattctttttattttcccggtacggggggggggggc
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : caacatttaaccccgccatagaccatttaaacacacccctttttcttttttttaattttc
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : agggttttttcttattaaaaataaccacccccccggagaagagttttgcttattggccac
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : cgggcggggggggaggtggagaaattctctcccccacaaaaaaaaccccccacgggcggg
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : tttctcttctcccctaaaaaaacacattccccggttttctcgtggcggggatatttactt
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : aagaggggtttgatatattagcgcataatcgcctccccgagaacaagcagcggcggtatg
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : tcccctagggtggggattggttttcccatatcgggggtacccgccaaaaaattttacaaa
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : tttttcgtccgggggaggggttaccccctttgcgagggttatgccgctacccgagagggg
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : acggctcaagggccgccactaaaaggcggtttggtttttttttagcccccccctcaaaac
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : gaaaaaccagagaaattattggccgcagactgaaaaggcgccaacaggaaaagtccttat
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : aaaaaataccctttaagggggggacccacggtataataagagtttcccggaaccccgcgc
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : tcttttttttttggtcccccccccctagcacaaaataatgcgcccgctgagagggaaaaa
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : cctcttaacgccctttatatagcccttctctgagagggctttctaacccttatttttttg
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : gcgattgtaaaaagaggttctctcaaaacttctggcctttcttatcgactcacataagat
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : ggtatcctcgggggggaccccccccccgccctctttttttcccaaaaatccccccacaat
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : atcttcttttcgtataagagggcctattaatgaaaatgatatttaggtggggtacgaggg
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : aaaggaggggtgtagaccaaaatattcccccannnnncaccnggnnnnnnaaaattgaaa
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : aggagggaacctcnaccgtctcactgataattttaactagaaactttttggacgtcgata
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
20110601C-004278 : ............................................................
---------+---------+---------+---------+---------+---------+ 668
HTMT1_0118_B01.b : ataatatgtaccgattcgnnnnnnn
HTMT1_0039_C02.b :
CBLT1_0035_G02.b :
CBLT1_0045_H08.b : atagaagaaggcgcttgtattgataataag
HTMT1_0036_B06.b :
HTMT1_0070_C05.b :
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