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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004326

Length: 940

Sequence:  [FASTA format sequence]
GGGCGGGTTG CCTCCTCCTC AGAGGGGCGG TTCCACGGTT GGTGTTTTCG AGCCTGCTTT
GGCTTGGTAA CTCCGCTTCA GCCTGTCGTC GACTGCGGTA GGGCCTCGAA CTTTAAGGTG
GAAGATGTCC GGAAATAACT TGGCAGAGGG CAGCAACCCA AGCGAGGCGC AGATGTCCGG
TGCGGAAGTC ATCGCCCAGT CCCTGAAAAC ACAGAACGTG AACTACATGT TTGGCATCGT
AGGCATTCCA GTGACTGAAA TTGCCCTTGC CACCCAGAAA CTGGGCATCA GATACGTCGG
GATGAGGAAT GAGCAGGCTG CTTGCTATGC TGCCTCTGCA GTTGGATATC TGACAGGCAG
GCCAGGAGTT TGCCTTGTCG TTTCTGGTCC AGGTCTCATC CATGCCTTGG GTGGTATGGC
AAATGCAAAC ATGAACTGTT GGCCCTTGAT TGTGATTGGT GGTTCCTCTG AAAGAAGTCA
GGAAACAATG GGAGCCTTCC AGGAGTTTCC TCAGGTTGAA GCTTGTAGAT TATATAGCAA
GTTCTCTGCC CGGCCAGATA GCATAGAAGC TATTCCCTCT GTTATTGAAA AGGCAGTGAG
AAGCAGTATT TATGGTCGTC CAGGTGCTTG CTATGTTGAC ATACCTGCAG ACTTTGTGAA
CCTCCAGGTG AATGTGAATT CTATAAAGTA TATGGAGTGC TGCTTGCCTC CTCCTATATG
TATGGCAGAA ACCTCTGCAG TATATGTGGC AGCATCTCTT CTTAGGAATG CCAAACAGCC
CCTTTCTATC ATCGGAAAAG GTGCTGCTTA TGCCCATGCA GAGCACAGTA TCAGAAAACT
GGTGGACCAT GCAAATTACC ATTTTTGCCC ACCCCATGGG AAGGNTGTTA TCCTGACACC
ATCCAACTGT GTAGTGCTGC AGATCCCAGG CTTGCACTTG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		HACL1	2-hydroxyacyl-CoA lyase 1 [Homo sapiens].	409	e-114	O
		ILVBL	acetolactate synthase-like protein [Homo sapiens].	95.1	8e-20	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Hacl1	2-hydroxyacyl-CoA lyase 1 [Mus musculus].	416	e-116	O
		Ilvbl	acetolactate synthase-like protein [Mus musculus].	100	2e-21	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC477060	PREDICTED: similar to 2-hydroxyphytanoyl-CoA lyase (2-HPCL) [Canis familiaris].	423	e-118
		LOC476683	PREDICTED: similar to ilvB (bacterial acetolactate synthase)-like isoform 1 [Canis familiaris].	97.4	2e-20

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		HACL1	2-hydroxyacyl-CoA lyase 1 [Bos taurus].	429	e-120	O
		ILVBL	acetolactate synthase-like protein [Bos taurus].	102	6e-22

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		HACL1	2-hydroxyacyl-CoA lyase 1 [Sus scrofa].	485	e-137	O
		ILVBL	PREDICTED: acetolactate synthase-like protein [Sus scrofa].	97.4	1e-20	O

Alignment:      TOP

20110601C-004326 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0218_D06.b :                                                             
AMP01_0006_D11.b :         aaataccgtatcttxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0078_H11.b : nggggaacactttaacgatacttxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0094_D12.b :                nnggtaannntttaacgatacataxxxxxxxxxxxxxxxxxxxxx


20110601C-004326 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0218_D06.b :        nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0006_D11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0078_H11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0094_D12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-004326 : .........GGGCGGGTTGCCTCCTCCTCAGAGGGGCGGTTCCACGGTTGGTGTTTTCGA
                   ---------+---------+---------+---------+---------+---------+ 51
OVRM1_0218_D06.b : xxxxxxxxxGGGCGGGTTGCCTCCTCCTCAGAGGGGCGGTTCCACGGTTGGTGTTTTCGA
AMP01_0006_D11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTTTTCGA
AMP01_0078_H11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtTTTTCGA
DCI01_0094_D12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-004326 : GCCTGCTTTGGCTTGGTAACTCCGCTTCAGCCTGTCGTCGACTGCGGTAGGGCCTCGAAC
                   ---------+---------+---------+---------+---------+---------+ 111
OVRM1_0218_D06.b : GCCTGCTTTGGCTTGGGAACTCCGCTTCAGCCTGTCGTCGACTGCGGTAGGGCCTCGAAC
AMP01_0006_D11.b : GCCTGCTTTGGCTTGGTAACTCCGCTTCAGCCTGTCGTCGACTGCGGTAGGGCCTCGAAC
AMP01_0078_H11.b : GCCTGCTTTGGCTTGGTAACTCCGCTTCAGCCTGTCGTCGACTGCGGTAGGGCCTCGAAC
DCI01_0094_D12.b : xxxxxCTTTGGCTTGGTAACTCCGCTTCAGCCTGTCGTCGACTGCGGTAGGGCCTCGAAC


20110601C-004326 : TTTAAGGTGGAAGATGTCCGGAAATAACTTGGCAGAGGGCAGCAACCCAAGCGAGGCGCA
                   ---------+---------+---------+---------+---------+---------+ 171
OVRM1_0218_D06.b : TTTAAGGTGGAAGATGTCCGGAAATAACTTGGCAGAGGGCAGCAACCCAAGCGAGACGCA
AMP01_0006_D11.b : TTTAAGGTGGAAGATGTCCGGAAATAACTTGGCAGAGGGCAGCAACCCAAGCGAGGCGCA
AMP01_0078_H11.b : TTTAAGGTGGAAGATGTCCGGAAATAACTTGGCAGAGGGCAGCAACCCAAGCGAGGCGCA
DCI01_0094_D12.b : TTTAAGGTGGAAGATGTCCGGAAATAACTTGGCAGAGGGCAGCAACCCAAGCGAGGCGCA


20110601C-004326 : GATGTCCGGTGCGGAAGTCATCGCCCAGTCCCTGAAAACACAGAACGTGAACTACATGTT
                   ---------+---------+---------+---------+---------+---------+ 231
OVRM1_0218_D06.b : GATGTCCGGTGCGGAAGTCATCGCCCAGTCCCTGAAAACACAGAACGTGAACTACATGTT
AMP01_0006_D11.b : GATGTCCGGTGCGGAAGTCATCGCCCAGTCCCTGAAAACACAGAACGTGAACTACATGTT
AMP01_0078_H11.b : AATGTCCGGTGCGGAAGTCATCGCCCAGTCCCTGAAAACACAGGACGTGAACTACATGTT
DCI01_0094_D12.b : GATGTCCGGTGCGGAAGTCATCGCCCAGTCCCTGAAAACACAGGACGTGAACTACATGTT


20110601C-004326 : TGGCATCGTAGGCATTCCAGTGACTGAAATTGCCCTTGCCACCCAGAAACTGGGCATCAG
                   ---------+---------+---------+---------+---------+---------+ 291
OVRM1_0218_D06.b : TGGCATCGTAGGCATTCCAGTGACTGAAATTGCCCTTGCCACCCAGAAACTGGGCATCAG
AMP01_0006_D11.b : TGGCATCGTAGGCATTCCAGTGACTGAAATTGCCCTTGCCACCCAGAAACTGGGCATCAG
AMP01_0078_H11.b : TGGCATCGTAGGCATTCCAGTGACTGAAATTGCCCTTGCCACCCAGAAACTGGGCATCAG
DCI01_0094_D12.b : TGGCATCGTAGGCATTCCAGTGACTGAAATTGCCCTTGCCACCCAGAAACTGGGCATCAG


20110601C-004326 : ATACGTCGGGATGAGGAATGAGCAGGCTGCTTGCTATGCTGCCTCTGCAGTTGGATATCT
                   ---------+---------+---------+---------+---------+---------+ 351
OVRM1_0218_D06.b : ATACGTCGGGATGAGGAATGAGCAGGCTGCTTGCTATGCTGCCTCTGCAGTTGGATATCT
AMP01_0006_D11.b : ATACGTCGGGATGAGGAATGAGCAGGCTGCTTGCTATGCTGCCTCTGCAGTTGGATATCT
AMP01_0078_H11.b : ATACGTCGGGATGAGGAATGAGCAGGCTGCTTGCTATGCTGCCTCTGCAGTTGGATATCT
DCI01_0094_D12.b : ATACGTCGGGATGAGGAATGAGCAGGCTGCTTGCTATGCTGCCTCTGCAGTTGGATATCT


20110601C-004326 : GACAGGCAGGCCAGGAGTTTGCCTTGTCGTTTCTGGTCCAGGTCTCATCCATGCCTTGGG
                   ---------+---------+---------+---------+---------+---------+ 411
OVRM1_0218_D06.b : GACAGGCAGGCCAGGAGTTTGCCTTGTCGTTTCTGGTCCAGGTCTCATCCATGCCTTGGG
AMP01_0006_D11.b : GACAGGCAGGCCAGGAGTTTGCCTTGTCGTTTCTGGTCCAGGTCTCATCCATGCCTTGGG
AMP01_0078_H11.b : GACAGGCAGGCCAGGAGTTTGCCTTGTCGTTTCTGGTCCAGGTCTCATCCATGCCTTGGG
DCI01_0094_D12.b : GACAGGCAGGCCAGGAGTTTGCCTTGTCGTTTCTGGTCCAGGTCTCATCCATGCCTTGGG


20110601C-004326 : TGGTATGGCAAATGCAAACATGAACTGTTGGCCCTTGATTGTGATTGGTGGTTCCTCTGA
                   ---------+---------+---------+---------+---------+---------+ 471
OVRM1_0218_D06.b : TGGTATGGCAAATGCAGACATGAACTGTTGGCCCTTGATTGTGATTGGTGGTTCCTCTGA
AMP01_0006_D11.b : TGGTATGGCAAATGCAAACATGAACTGTTGGCCCTTGATTGTGATTGGTGGTTCCCCTGA
AMP01_0078_H11.b : TGGTATGGCAAATGCAAACATGAACTGTTGGCCCTTGATTGTGATTGGTGGTTCCTCTGA
DCI01_0094_D12.b : TGGTATGGCAAATGCAAACATGAACTGTTGGCCCTTGATTGTGATTGGTGGTTCCTCTGA


20110601C-004326 : AAGAAGTCAGGAAACAATGGGAGCCTTCCAGGAGTTTCCTCAGGTTGAAGCTTGTAGATT
                   ---------+---------+---------+---------+---------+---------+ 531
OVRM1_0218_D06.b : AAGAAGTCAGGAAACAATGGGAGCCTTCCAGGAGTTTCCTCAGGTTGAAGCTTGTAGATT
AMP01_0006_D11.b : AAGAAGTCAGGAAACAATGGGAGCCTTCCAGGAGTTTCCTCAAGTTGAAGCTTGTANATT
AMP01_0078_H11.b : AAGAAGTCAGGAAACAATGGGAGCCTTCCAGGAGTTTCCTCAGGTTGAAGCTTGTAGATT
DCI01_0094_D12.b : AAGAAGTCAGGAAACAATGGGAGCCTTCCAGGAGTTTCCTCAGGTTGAAGCTTGTAGATT


20110601C-004326 : ATATAGCAAGTTCTCTGCCCGGCCAGATAGCATAGAAGCTATTCCCTCTGTTATTGAAAA
                   ---------+---------+---------+---------+---------+---------+ 591
OVRM1_0218_D06.b : ATATAGCAAGTTCTCTGCCCGGCCAGATAGCATAGAAGCTATTCCCTCTGGTTATTGAAA
AMP01_0006_D11.b : ATATAGCATGTTCTCTGCCCGGCtcagatacttataagctattccctctgttatttaaaa
AMP01_0078_H11.b : ATATAGCAAGTTCTCTGCCCGGCCAGATAGCATAGAAGCTATTCCCTCTGTTATTGAAAA
DCI01_0094_D12.b : ATATAGCAAGTTCTCTGCCCGGCCAGATAGCATAGAAGCTATTCCCTCTGTTATTGAAAA


20110601C-004326 : GGCAGTGAGAAGCAGTATTTATGGTCGTCCAGGTGCTTGCTATGTTGACATACCTGCAGA
                   ---------+---------+---------+---------+---------+---------+ 651
OVRM1_0218_D06.b : GGCAGTGAGAAGCAGTATTTATGGTCGTCCAGGTGCTTGCTATGTTGACATACCTGCAGA
AMP01_0006_D11.b : tgcattgagcatcattatttatgttcgttcaatatgccggttaagttttaantcctgcta
AMP01_0078_H11.b : GGCAGTGAGAAGCAGTATTTATGGCCGTCCAGGTGCTTGCTATGTTGACATACCTGCAGA
DCI01_0094_D12.b : GGCAGTGAGAAGCAGTATTTATGGCCGTCCAGGTGCTTGCTATGTTGACATACCTGCAGA


20110601C-004326 : CTTTGTGAACCTCCAGGTGAATGTGAATTCTATAAAGTATATGGAGTGCTGCTTGCCTCC
                   ---------+---------+---------+---------+---------+---------+ 711
OVRM1_0218_D06.b : CTTTGTGAACCTCCAGGTGAATGTGAATTCTATAAAGTATATGGAGTGCTGCTTGCCTCC
AMP01_0006_D11.b : nacttttgtttcccctctttagcattgttctttctcattactaatgtagtttttatttct
AMP01_0078_H11.b : CTTTGTGAACCTCCAGGTGAATGTGAATTCTATAAAGTATATGGAGTGCTGCTTGCCTCC
DCI01_0094_D12.b : CTTTGTGAACCTCCAGGTGAATGTGAATTCTATAAAGTATATGGAGTGCTGCTTGCCTCC


20110601C-004326 : TCCTATATGTATGGCAGAAACCTCTGCAGTATATGTGGCAGCATCTCTTCTTAGGAATGC
                   ---------+---------+---------+---------+---------+---------+ 771
OVRM1_0218_D06.b : TCCTATATGTATGGCAGAAACCTCTGCAGTAGATGTGGCAGCATCTCTTCTTAGGAATGC
AMP01_0006_D11.b : tcccctcccacttttccgccttaatattctactcgaaattttttccttcttaaatttatt
AMP01_0078_H11.b : TCCTATATGTATGGCAGAAACCTCTGCAGTATATGTGGCAGCATCTCTTCTTAAGAATGC
DCI01_0094_D12.b : TCCTATATGTATGGCAGAAACCTCTGCAGTATATGTGGCAGCATCTCTTCTTAGGAATGC


20110601C-004326 : CAAACAGCCCCTTTCTATCATCGGAAAAGGTGCTGCTTATGCCCATGCAGAGCACAGTAT
                   ---------+---------+---------+---------+---------+---------+ 831
OVRM1_0218_D06.b :                                                            
AMP01_0006_D11.b : ataacctctaacaatttttttcctanntatcacattgcgacctttgtatctcttatttat
AMP01_0078_H11.b : CAAACAGCCCCTTTCTATCATCGGGAAAGGTGCTGCTTATGCCCATGCAGAGCACAGTAT
DCI01_0094_D12.b : CAAACAGCCCCTTTCTATCATCGGAAAAGGTGCTGCTTATGCCCATGCAGAGCACAGTAT


20110601C-004326 : CAGAAAACTGGTGGACCATGCAAATTACCATTTTTGCCCACCCCATGGGAAGGNTGTTAT
                   ---------+---------+---------+---------+---------+---------+ 891
OVRM1_0218_D06.b :                                                             
AMP01_0006_D11.b : ccctactatccctaattttattccaaaactcttaataaatcattcttagaccttacttat
AMP01_0078_H11.b : CAGAAAACTGGTGGAGCATGCAAATTACCATTTTTGCCCACCCCATGGGAAaggggtgta
DCI01_0094_D12.b : CAGAAAACTGGTGGACCNNATGCAATACCATTTTTGCCCACCCCATGGGAAGGNTGTTAT


20110601C-004326 : CCTGACACCATCCAACTGTGTAGTGCTGCAGATCCCAGGCTTGCACTTG...........
                   ---------+---------+---------+---------+---------+---------+ 940
OVRM1_0218_D06.b :                                                             
AMP01_0006_D11.b : tcctttagattttacctattctactattaatttctaatactattaacagcagaattacta
AMP01_0078_H11.b : tnccctgacacatcnaactgtgtaggtgctgccagatcaggggcttgcaactgctgatgt
DCI01_0094_D12.b : CCTGACACCATCCAACTGTGTAGTGCTGCAGATCCCAGGCTTGCACTTGctgatgtaatg


20110601C-004326 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 940
OVRM1_0218_D06.b :                                                             
AMP01_0006_D11.b : ttatacttcactctccattatcattctcctacttctggtcttctaccagactattataaa
AMP01_0078_H11.b : attgtggtattgggtgcagataaaatggattttgcattggactgcctcaaaaaacagccc
DCI01_0094_D12.b : tgtaattnngtgcagataaatggatttgcatttggactgcctccagataccgccagatgt


20110601C-004326 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 940
OVRM1_0218_D06.b :                                                             
AMP01_0006_D11.b : tcgtcatttataatgtttatattcacaattccctcccatgctatcttcgcgtttaatntg
AMP01_0078_H11.b : gatgtaagtttatccggttgatatcgtgcaaaaaatttaggaaaaagaagggcggctttg
DCI01_0094_D12.b : gagttattccggtgaattctgtccaaaagttgggaaaaataagggcttgcttgccttgct


20110601C-004326 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 940
OVRM1_0218_D06.b :                                                             
AMP01_0006_D11.b : ataccgcctataattggatcttaccaattgatctcatcat                   
AMP01_0078_H11.b : gcccttcttgaaacataagcctcccccccacctttggaaaaatttaaaaaaaagggccgt
DCI01_0094_D12.b : ggaaaataaagctgtccccaaccctttgaaaattttaaaaactgggaaatccccgaaaaa


20110601C-004326 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 940
OVRM1_0218_D06.b :                                                             
AMP01_0006_D11.b :                                                             
AMP01_0078_H11.b : ctccccaagaaaagggggaa                                       
DCI01_0094_D12.b : aggggggaaatttaaaaaaaaagaacaataaactcctt