[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-004478
Length:
1,123
Sequence:
[FASTA format sequence]
TCCGGCCGGA CGAAGAAGAC TGGCGACAAG TGCCTGCACC TCTCCTTCAG GGGTGCCATA
ATCTGGGGCC ACGTGGTGTT TGCCACCCAG GAGACATCTC CCTATGACAT AGCAGTGGTG
AGCCTGGAGG AGGACCTAGA GGGTGTCCCC ATACCTGTTC CAGCTGAGGA TTTCCATGAA
GGCGAGGCCG TCACGGTGGT GGGCTTCGGC GTCTTCGGCC AGGCTTGTGG GCCCTCAGTG
ACCTCAGGCA TCCTATCGGC TGTGGTGCAA GTAGATGACA CACCAGTTAT GCTACAGACC
ACATGTGCCG TGCATGGTGG CTCCAGCGGG GGACCTCTCT TCTCCACCTG CTCTGGGAAC
CTCTTAGGCA TCATCGCCAG CAACACCCGG GACAATAACA CTGGGGCCAC CTACCCCCAC
CTGAACTTCA GCATTCCCAT CACGGTGCTC CAGCCGGCCC TGCAGCAGTA CCATCAGACA
GGAGATCTGG GCGGCCTCCG GCAGCTGGAC CGCGCCACTG AGCCAGTCAG GGTGGTGTGG
CGGCTGCAGC AACCCCAGAC AGAGGCCCCA CGGAGCAAGC TCTGAAGCTG TGTCTCCCCT
CTGGAGAGAA GAGCAGCCAC TTTATGCCAC AGGGAGTGCT AAAGCTGGTG ACCTCAGAAT
CCTGACCCAG CACGCTGCAG CTGGGCTGCC TCCCGTCGCC AGCCCTGGAG TCTGGATCAA
ACTTCTCATT AGCCTCTATG GGTCTCTAAC CTAGTCGCCC ATTTGAGGGG TGCTTTCTCG
AGCCCCCATC TCTCTCTGTC CCCTGACACT AGACTCAGCT CTGTTCTCTC CCCTTCTGGG
GAGCCCAGAA TGACTGTACA ACAGCCCTGG TCCTGACAGA TGGATGGGAG TTGGAAGGCA
GGTCCGGCCC TGGGTTTGAG TCTGCTCCCT GTCTCCTGAT GGCCACCGGC CGCCTGGAGC
AGTTGCTTCC TGCACCCTGA GCTCCTCTCT GCTCTGGGTC AGAATGGGGC TGGCAGAGCA
CTGGGGCTTC CTCAGAAAAA TGGGCACAGA GGCCCTGTTC TGAAGACCAG AGGTGAAAGG
AGGGCATCTT CCTGTTCCGC TAGACCAGAG GCGGTGGCGT GCC
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | TYSND1 | peroxisomal leader peptide-processing protease isoform a [Homo sapiens]. | 310 | 1e-84 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| Tysnd1 | peroxisomal leader peptide-processing protease [Mus musculus]. | 307 | 1e-83 |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| TYSND1 | PREDICTED: peroxisomal leader peptide-processing protease isoform 1 [Sus scrofa]. | 360 | 1e-99 |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
20110601C-004478 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
SPL01_0076_C09.b : nnggctaggacttaaacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0101_F08.b : gttgtcaaacxxxxxxxxxx
TES01_0006_G06.b :
SPL01_0076_H11.b : nnnggctaggacttaaacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0198_G08.b :
20110601C-004478 : ....................TCCGGCCGGACGAAGAAGACTGGCGACAAGTGCCTGCACC
---------+---------+---------+---------+---------+---------+ 40
SPL01_0076_C09.b : xxxxxxxxxxxxxxxxxxxxTCCGGCCGGACGAAGAAGACTGGCGACAAGTGCCTGCACC
THY01_0101_F08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgaagaagACTGGCGAC*AGTGCCTGCACC
TES01_0006_G06.b : nccgctgtggctatggaaccggccggacgaaaaACTGGCGACA*GTGCCTGCACC
SPL01_0076_H11.b : xxxxxxxxxxxxxxxxxxxxtccggccggacgaagaagACTGGCGACAAGTGCCTGCACC
OVRM1_0198_G08.b :
20110601C-004478 : TCTCCTTCAGGGGTGCCATAATCTGGGGCCACGTGGTGTTTGCCACCCAGGAGACATCTC
---------+---------+---------+---------+---------+---------+ 100
SPL01_0076_C09.b : TCTCCTTCAGGGGTGCCATAATCTGGGGCCACGTGGTGTTTGCCACCCAGGAGACATCTC
THY01_0101_F08.b : TCTCCTTCAGGGGTGCCATAATCTGGGGCCACGTGGTGTTTGCCACCCAGGAGACATCTC
TES01_0006_G06.b : TCTCCTTCAGGGGTGCCATAATCTGGGGCCACGTGGTGTTTGCCACCCAGGAGACATCTC
SPL01_0076_H11.b : TCTCCTTCAGGGGTGCCATAATCTGGGGCCACGTGGTGTTTGCCACCCAGGAGACATCTC
OVRM1_0198_G08.b :
20110601C-004478 : CCTATGACATAGCAGTGGTGAGCCTGGAGGAGGACCTAGAGGGTGTCCCCATACCTGTTC
---------+---------+---------+---------+---------+---------+ 160
SPL01_0076_C09.b : CCTATGACATAGCAGTGGTGAGCCTGGAGGAGGACCTAGAGGGTGTCCCCATACCTGTTC
THY01_0101_F08.b : CCTATGACATAGCAGTGGTGAGCCTGGAGGAGGACCTAGAGGGTGTCCCCATACCTGTTC
TES01_0006_G06.b : CCTATGACATAGCAGTGGTGAGCCTGGAGGAGGACCTAGAGGGTGTCCCCATACCTGTTC
SPL01_0076_H11.b : CCTATGACATAGCAGTGGTGAGCCTGGAGGAGGACCTAGAGGGTGTCCCCATACCTGTTC
OVRM1_0198_G08.b :
20110601C-004478 : CAGCTGAGGATTTCCATGAAGGCGAGGCCGTCACGGTGGTGGGCTTCGGCGTCTTCGGCC
---------+---------+---------+---------+---------+---------+ 220
SPL01_0076_C09.b : CAGCTGAGGATTTCCATGAAGGCGACGCCGTCACGGTGGTGGGCTTCGGCGTCTTCGGCC
THY01_0101_F08.b : CAGCTGAGGATTTCCATGAAGGCGAGGCCGTCACGGTGGTGGGCTTCGGCGTCTTCGGCC
TES01_0006_G06.b : CAGCTGAGGATTTCCATGAAGGCGAGGCCGTCACGGTGGTGGGCTTCGGCGTCTTCGGCC
SPL01_0076_H11.b : CAGCTGAGGATTTCCATGAAGGCGACGCCGTCACGGTGGTGGGCTTCGGCGTCTTCGGCC
OVRM1_0198_G08.b :
20110601C-004478 : AGGCTTGTGGGCCCTCAGTGACCTCAGGCATCCTATCGGCTGTGGTGCAAGTAGATGACA
---------+---------+---------+---------+---------+---------+ 280
SPL01_0076_C09.b : AGGCTTGTGGGCCCTCAGTGACCTCAGGCATCCTATCGGCTGTGGTGCAAGTAGATGACA
THY01_0101_F08.b : AGGCTTGTGGGCCCTCAGTGACCTCAGGCATCCTATCGGCTGTGGTGCAAGTAGATGACA
TES01_0006_G06.b : AGGCTTGTGGGCCCTCAGTGACCTCAGGCATCCTATCGGCTGTGGTGCAAGTAGATGACA
SPL01_0076_H11.b : AGGCTTGTGGGCCCTCAGTGACCTCAGGCATCCTATCGGCTGTGGTGCAAGTAGATGACA
OVRM1_0198_G08.b :
20110601C-004478 : CACCAGTTATGCTACAGACCACATGTGCCGTGCATGGTGGCTCCAGCGGGGGACCTCTCT
---------+---------+---------+---------+---------+---------+ 340
SPL01_0076_C09.b : CACCAGTTATGCTACAGACCACATGTGCCGTGCATGGTGGCTCCAGCGGGGGACCTCTCT
THY01_0101_F08.b : CACCAGTTATGCTACAGACCACATGTGCCGTGCATGGTGGCTCCAGCGGGGGACCTCTCT
TES01_0006_G06.b : CACCAGTTATGCTACAGACCACATGTGCCGTGCATGGTGGCTCCAGCGGGGGACCTCTCT
SPL01_0076_H11.b : CACCAGTTATGCTACAGACCACATGTGCCGTGCATGGTGGCTCCAGCGGGGGACCTCTCT
OVRM1_0198_G08.b :
20110601C-004478 : TCTCCACCTGCTCTGGGAACCTCTTAGGCATCATCGCCAGCAACACCCGGGACAATAACA
---------+---------+---------+---------+---------+---------+ 400
SPL01_0076_C09.b : TCTCCACCTGCTCTGGGAACCTCTTAGGCATCATCGCCAGCAACACCCGGGACAATAACA
THY01_0101_F08.b : TCTCCACCTGCTCTGGGAACCTCTTAGGCATCATCGCCAGCAACACCCGGGACAATAACA
TES01_0006_G06.b : TCTCCACCTGCTCTGGGAACCTCTTAGGCATCATCGCCAGCAACACCCGGGACAATAACA
SPL01_0076_H11.b : TCTCCACCTGCTCTGGGAACCTCTTAGGCATCATCGCCAGCAACACCCGGGACAATAACA
OVRM1_0198_G08.b : agttgtcxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-004478 : CTGGGGCCACCTACCCCCACCTGAACTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCC
---------+---------+---------+---------+---------+---------+ 460
SPL01_0076_C09.b : CTGGGGCCACCTACCCCCACCTGAACTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCC
THY01_0101_F08.b : CTGGGGCCACCTACCCCCACCTGAACTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCC
TES01_0006_G06.b : CTGGGGCCACCTACCCCCACCTGAACTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCC
SPL01_0076_H11.b : CTGGGGCCACCTACCCCCACCTGAACTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCC
OVRM1_0198_G08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCC
20110601C-004478 : TGCAGCAGTACCATCAGACAGGAGATCTGGGCGGCCTCCGGCAGCTGGACCGCGCCACTG
---------+---------+---------+---------+---------+---------+ 520
SPL01_0076_C09.b : TGCAGCAGTACCATCAGACAGGAGATCTGGGCGGCCTCCGGCAGCTGGACCGCGCCACTG
THY01_0101_F08.b : TGCAGCGGTACCATCAGACAGGAGATCTGGGCGGCCTCCGGCAGCTGGACCGCGCCACTG
TES01_0006_G06.b : TGCAGCAGTACCATCAGACAGGAGATCTGGGCGGCCTCCGGCAGCTGGACCGCGCCACTG
SPL01_0076_H11.b : TGCAGCAGTACCATCAGACAGGAGATCTGGGCGGCCTCCGGCAGCTGGACCGCGCCACTG
OVRM1_0198_G08.b : TGCGGCAGTACCATCAGACAGGAGATCTGGGCGGCCTCCGGCAGCTGGACCGCGCCACTG
20110601C-004478 : AGCCAGTCAGGGTGGTGTGGCGGCTGCAGCAACCCCAGACAGAGGCCCCACGGAGCAAGC
---------+---------+---------+---------+---------+---------+ 580
SPL01_0076_C09.b : AGCCAGTCAGGGTGGTGTGGCGGCTGCAGCAACCCCAGACAGAGGCCCCACGGAGCAAGC
THY01_0101_F08.b : AGCCAGTCAGGGTGGTGTGGCGGCTGCAGCAACCCCAGACAGAGGCCCCACGagcaagct
TES01_0006_G06.b : AGCCAGTCAGGGTGGTGTGGCGGCTGCAGCAACCCCAGACAGAGGCCCCACGGAGCAGGC
SPL01_0076_H11.b : AGCCAGTCAGGGTGGTGTGGCGGCTGCAGCAACCCCAGACAGAGGCCCCACGGAGCAAGC
OVRM1_0198_G08.b : AGCCAGTCAGGGTGGTGTGGCGGCTGCAGCAACCCCAGACAGAGGCCCCACGGAGCAAGC
20110601C-004478 : TCTGAAGCTGTGTCTCCCCTCTGGAGAGAAGAGCAGCCACTTTATGCCACAGGGAGTGCT
---------+---------+---------+---------+---------+---------+ 640
SPL01_0076_C09.b : TCTGAAGCTGTGTCTCCCCTCTGGAGAGAAGAGCAGCCACTTTATGCCACAGGGAGTGCT
THY01_0101_F08.b : cttaacctgttctcccctttgaaaaagagcagcatttttgcccagggagttctaactgg
TES01_0006_G06.b : TCTGAAGCTGTGTCTCCCCTCTGGAGAGAAGAGCAGCCACTTTATGCCACAGGGAGTGCT
SPL01_0076_H11.b : TCTGAAGCTGTGTCTCCCCTCTGGAGAGAAGAGCAGCCACTTTATGCCACAGGGAGTGCT
OVRM1_0198_G08.b : TCTGAAGCTGTGTCTCCCCTCTGGAGAGAAGAGCAGCCACTTTATGCCACAGGGAGTGCT
20110601C-004478 : AAAGCTGGTGACCTCAGAATCCTGACCCAGCACGCTGCAGCTGGGCTGCCTCCCGTCGCC
---------+---------+---------+---------+---------+---------+ 700
SPL01_0076_C09.b : AAAGCTGGTGACCTCAGAATCCTGACCCAGCACGCTGCAGCTGGGCTGCCTCCCGTCGCC
THY01_0101_F08.b :
TES01_0006_G06.b : AAAGCTGGTGACCTCAGAATCCTGACCCAGCACGCTGCAGCTGGGCTGCCTCCCGTCGCC
SPL01_0076_H11.b : AAAGCTGGTGACCTCAGAATCCTGACCCAGCACGCTGCAGCTGGGCTGCCTCCCGTCGCC
OVRM1_0198_G08.b : AAAGCTGGTGACCTCAGAATCCTGACCCAGCACACTGCAGCTGGGCTGCCTCCCGTCGCC
20110601C-004478 : AGCCCTGGAGTCTGGATCAAACTTCTCATTAGCCTCTATGGGTCTCTAACCTAGTCGCCC
---------+---------+---------+---------+---------+---------+ 760
SPL01_0076_C09.b : AGCCCTGGAGTCTGGATCAAACTTCTCATTAGCCTCTATGGGTCTCTAACCTAGTCGCCC
THY01_0101_F08.b :
TES01_0006_G06.b : AGCCCTGGAGTCTGGATCAAACTTCTCATTAGCCTCTATGGGTCTCTAACCTAGTCGCCC
SPL01_0076_H11.b : AGCCCTGGAGTCTGGATCAAACTTCTCATTAGCCTCTATGGGTCTCTAACCTAGTCGCCC
OVRM1_0198_G08.b : AGCCCTGGAGTCTGGATCAAACTTCTCGTTAGCCTCTATGGGTCTCTAACCTAGTCGCCC
20110601C-004478 : ATTTGAGGGGTGCTTTCTCGAGCCCCCATCTCTCTCTGTCCCCTGACACTAGACTCAGCT
---------+---------+---------+---------+---------+---------+ 820
SPL01_0076_C09.b : ATTTGAGGGGTGCTTTCTCGAGCCCCCATCTCTCTCTGTCCCCTGACACTAGACTCAGCT
THY01_0101_F08.b :
TES01_0006_G06.b : ATTTGAGGGGTGCTTTCTCGAGCCCCCATCTCTCTCTGTCCCCTGACACTAGACTCAGCT
SPL01_0076_H11.b : ATTTGAGGGGTGCTTTCTCGAGCCCCCATCTCTCTCTGTCCCCTGACACTAGACTCAGCT
OVRM1_0198_G08.b : ATTTGAGGGGTGCTTTCTCGAGCCCCCATCTCTCTCTGTCCCCTGACACTAGACTCAGCT
20110601C-004478 : CTGTTCTCTCCCCTTCTGGGGA*GCCCAGAATGACTGTACAACAGCCCTGGTCCTGACAG
---------+---------+---------+---------+---------+---------+ 879
SPL01_0076_C09.b : CTGTTCTCTCCCTTTctggggaacccagaatgactgtacaacaacccttgttcctgacaa
THY01_0101_F08.b :
TES01_0006_G06.b : CTGTTCTCTCCCCTTCTGGGGAAACCCAAAATGACTGTACAACAGCCCTGGGCCTGACAA
SPL01_0076_H11.b : CTGTTCTCTCCCTTTCTGGGGAAcccagaatgacttgtacaacagccctggttctgaccg
OVRM1_0198_G08.b : CTGTTCTCTCCCCTTCTGGGGA*GCCCAGAATGACTGTACAACAGCCCTGGTCCTGACAG
20110601C-004478 : ATGGATGGGAGTTGGAAGGCAGGTCCGGCCCTGGGTTTGAGTCTGCTCCCTGTCTCCTGA
---------+---------+---------+---------+---------+---------+ 939
SPL01_0076_C09.b : aacgaatgggagttggaaggcaggtctgggccctgggtttgaagtctgctccctgtctcc
THY01_0101_F08.b :
TES01_0006_G06.b : ACCGATGGGAGTTGGAAGGCAGGTCttggccctgggttttgagtctgctccctgtcctcc
SPL01_0076_H11.b : accggatggaaattggaaagccagttcttgcccctgggttttgagtctgcttccctgttc
OVRM1_0198_G08.b : ATGGATGGGAGTTGGAAGGCAGGTCCGGCCCTGGGTTTGAGTCTGCTCCCTGTCTCCTGA
20110601C-004478 : TGGCCACCGGCCGCCTGGAGCAGTTGCTTCCTGCACCCTGAGCTCCTCTCTGCTCTGGGT
---------+---------+---------+---------+---------+---------+ 999
SPL01_0076_C09.b : cggatggccccccggcccgccctggaacaatttgctttcctggcccctggaactccctct
THY01_0101_F08.b :
TES01_0006_G06.b : tgatggcccaccggccgccctggaacagttgctttcctgccaccctgagccacctcctct
SPL01_0076_H11.b : tccggaatggccaccggcccgccctggaaccaatttgcttcctggccaccctgagactcc
OVRM1_0198_G08.b : TGGCCACCGGCCGCCTGGAGCAGTTGCTTCCTGCACCCTGAGCTCCTCTCTGCTCTGGGT
20110601C-004478 : CAGAATGGGGCTGGCAGAGCACTGGGGCTTCCTCAGAAAAATGGGCACAGAGGCCCTGTT
---------+---------+---------+---------+---------+---------+ 1059
SPL01_0076_C09.b : ctggctctgggggcaaaaaatggggcttgggaaaaaccactgtgggccttccccccaaaa
THY01_0101_F08.b :
TES01_0006_G06.b : gcttcggggtcagaaaggggggcttggcaaaaccccttggggctttcccccaagaaaaat
SPL01_0076_H11.b : ctctccggcccctggggtcaan
OVRM1_0198_G08.b : CAGAATGGGGCTGGCAGAGCACTGGGGCTTCCTCAGAAAAATGGGCACAGAGGCCCTGTT
20110601C-004478 : CTGAAGACCAGAGGTGAAAGGAGGGCATCTTCCTGTTCCGCTAGACCAGAGGCGGTGGCG
---------+---------+---------+---------+---------+---------+ 1119
SPL01_0076_C09.b : aaaagggggcacaaaaaggccccgtttttgtaaaaa
THY01_0101_F08.b :
TES01_0006_G06.b : gggccacaaaaggcccctggttctttaaaaaccaaagggtgaaaggggagggcattcttc
SPL01_0076_H11.b :
OVRM1_0198_G08.b : CTGAAGACCAGAGGTGAAAGGAGGGCATCTTCCTGTTCCGCTAGACCAGAGGCGGTGGCG
20110601C-004478 : TGCC........................................................
---------+---------+---------+---------+---------+---------+ 1123
SPL01_0076_C09.b :
THY01_0101_F08.b :
TES01_0006_G06.b : cctggtttcgcctaaaacccaaaagcgcgggggccttgcccttaaaaacccaggaacccc
SPL01_0076_H11.b :
OVRM1_0198_G08.b : TGCCtgatagccaggactcctgtctcttcatatgccaggggccctgacctacagg
20110601C-004478 : ............................................................
---------+---------+---------+---------+---------+---------+ 1123
SPL01_0076_C09.b :
THY01_0101_F08.b :
TES01_0006_G06.b : tgtggctcctttctatatcccagggggccccg
SPL01_0076_H11.b :
OVRM1_0198_G08.b :
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