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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004555

Length: 897

Sequence [FASTA format sequence]
GATCGCGAGG GACATGTGGA CGCTCGGGCG CCGAGCGGCT GCCGGCCTCC TTCCCCGCTC
CGGGCCCCGA GGCTCTGCCC AGGCCCGCGC CGGGGCTCCG CGGCCGACGA AAGATCCCCA
GCCTTATGGC TGCCGGGGTC TGCGCACCGG GACCGCCGCG GCACGCGCAC GCAACCAGTC
GAGTGTGAGC CTCCGCTGCC TCAACCAGAT TCTGAATGTC AAAAAGCAGA GCATCTGTTT
GATGAATTTG AGGACAACAG GAACTTTGGG CAATGCTGGC TCTCTGGATG ATACCACCTA
TGAAAGGCTG GCCGAGGAGA CGCTGGACTC CTTAGCAGAG TTTTTTGAAG ACCTTGCAGA
CAAACCTTTC ACATTTGAAG ACTATGATGT CTCCTTTGGG AGTGGCGTTT TAACCATTAA
ACTGGGTGGA GATCTAGGAA CCTACGTGAT CAACAAGCAG ACCCCAAACA AGCAAATCTG
GTTATCTTCA CCATCCAGTG GCCCCAAGCG CTACGACTGG ACGGGGAGGA ACTGGGTGTA
CTCCCACGAC GGTGTGTCCC TCCACGAGCT GCTGGCCAGG GAGCTGACGA CGGCCTTAAA
AACCAAACTG GACTTATCTT CTCTGGCCTA CTCTGGGAAA GGCACTTGCT GCCCAGCCTA
GTGCTAAAGA CATTAAAAGC TCTACAGCCA AGACCCCAGC TTTGGCCTTC AGCCGAATGG
CTAGTTTTTT CCATTCTTGC CTTTGAGGAC AGTTATATTG TGTGTAGCTG CTCTGTGAAA
AGACTGTGTC GCCTCTCGCC CTGCCCCTGA TTAATTTCCA TAGAGTTTTT TTTTTTTTTT
TTTTTTTTTT GGGATTTGTC TGCTTTCCCT TCCTCATGTG ATACCCCCTG ATCCCTT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFXNfrataxin, mitochondrial isoform 1 preproprotein [Homo sapiens]. 3002e-81O
Contig/Assembly ProteinFXNfrataxin, mitochondrial isoform 3 preproprotein [Homo sapiens]. 2071e-53O
Contig/Assembly ProteinFXNfrataxin, mitochondrial isoform 2 preproprotein [Homo sapiens]. 2071e-53O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFxnfrataxin, mitochondrial precursor [Mus musculus]. 2847e-77O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFXNfrataxin [Canis lupus familiaris]. 3184e-87O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFXNfrataxin, mitochondrial precursor [Bos taurus]. 3462e-95O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Members: 5      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVR010003H10LVR01_0003_H10.bBP447913 AK345801
PST010019B09PST01_0019_B09.bFS698451 
SMG010069G12SMG01_0069_G12.bFS719264 AK350084
UTR010038A11UTR01_0038_A11.bBP169832 
UTR010040D03UTR01_0040_D03.bBP171090 

  

SNPs: 2      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
47C300.600WNCTC/L
T200.400TTC/F
163A300.600WSGCA/A
C200.400GCC/A


Alignment:      TOP

20110601C-004555 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
SMG01_0069_G12.b : nngggctttnnanttgagtaagcagcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PST01_0019_B09.b :
UTR01_0038_A11.b : ggggcacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0003_H10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
UTR01_0040_D03.b : tggtgcactattagxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-004555 : ...........GATCGCGAGGGACATGTGGACGCTCGGGCGCCGAGCGGCTGCCGGCCTC
---------+---------+---------+---------+---------+---------+ 49
SMG01_0069_G12.b : xxxxxxxxxxxGATCGCGAGGGACATGTGGACGCTCGGACGCCGAGCGGCTGCCGGCTTC
PST01_0019_B09.b : ctctggagtcgcgagggaATGTGGACGCTCGGACGCCGAGCGGCTGCCGGCTTC
UTR01_0038_A11.b : xxxxxxxxxxxxxxxxxxxxxxxcATGTGGACGCTCGGGCGCCGAGCGGCTGCCGGCCTC
LVR01_0003_H10.b : xxxxxxxxxxxxxxxxxxxxxxxcATGTGGACGCTCGGGCGCCGAGCGGCTGCCGGCCTC
UTR01_0040_D03.b : xxxxxxxxxxxxxxxxxxxxxxxxxTGTGGACGCTCGGGCGCCGAGCGGCTGCCGGCCTC
20110601C-004555 : CTTCCCCGCTCCGGGCCCCGAGGCTCTGCCCAGGCCCGCGCCGGGGCTCCGCGGCCGACG
---------+---------+---------+---------+---------+---------+ 109
SMG01_0069_G12.b : CTTCCCCGCTCCGGGCCCCGAGGCTCTGCCCAGGCCCGCGCCGGGGCTCCGCGGCCGACG
PST01_0019_B09.b : CTTCCCCGCTCCGGGCCCCGAGGCTCTGCCCAGGCCCGCGCCGGGGCTCCGCGGCCGACG
UTR01_0038_A11.b : CTTCCCCGCTCCGGGCCCCGAGGCTCTGCCCAGGCCCGCGCCGGGGCTCCGCGGCCGACG
LVR01_0003_H10.b : CTTCCCCGCTCCGGGCCCCGAGGCTCTGCCCAGGCCCGCGCCGGGGCTCCGCGGCCGACG
UTR01_0040_D03.b : CTTCCCCGCTCCGGGCCCCGAGGCTCTGCCCAGGCCCGCGCCGGGGCTCCGCGGCCGACG
20110601C-004555 : AAAGATCCCCAGCCTTATGGCTGCCGGGGTCTGCGCACCGGGACCGCCGCGGCACGCGCA
---------+---------+---------+---------+---------+---------+ 169
SMG01_0069_G12.b : AAAGATCCCCAGCCTTATGGCTGCCGGGGTCTGCGCACCGGGACCGCCGCGGCCCGCGCA
PST01_0019_B09.b : AAAGATCCCCAGCCTTATGGCTGCCGGGGTCTGCGCACCGGGACCGCCGCGGCCCGCGCA
UTR01_0038_A11.b : AAAGATCCCCAGCCTTATGGCTGCCGGGGTCTGCGCACCGGGACCGCCGCGGCACGCGCA
LVR01_0003_H10.b : AAAGATCCCCAGCCTTATGGCTGCCGGGGTCTGCGCACCGGGACCGCCGCGGCACGCGCA
UTR01_0040_D03.b : AAAGATCCCCAGCCTTATGGCTGCCGGGGTCTGCGCACCGGGACCGCCGCGGCACGCGCA
20110601C-004555 : CGCAACCAGTCGAGTGTGAGCCTCCGCTGCCTCAACCAGATTCTGAATGTCAAAAAGCAG
---------+---------+---------+---------+---------+---------+ 229
SMG01_0069_G12.b : CGCAACCAGTCGAGTGTGAGCCTCCGCTGCCTCAACCAGATTCTGAATGTCAAAAAGCAG
PST01_0019_B09.b : CGCAACCAGTCGAGTGTGAGCCTCCGCTGCCTCAACCAGATTCTGAATGTCAAAAAGCAG
UTR01_0038_A11.b : CGCAACCAGTCGAGTATGAGCCTCCGCTGCCTCAACCAGATTCTGAATGTCAAAAAGCAG
LVR01_0003_H10.b : CGCAACCAGTCGAGTGTGAGCCTCCGCTGCCTCAACCAGATTCTGAATGTCAAAAAGCAG
UTR01_0040_D03.b : CGCAACCAGTCGAGTGTGAGCCTCCGCTGCCTCAACCAGATTCTGAATGTCAAAAAGCAG
20110601C-004555 : AGCATCTGTTTGATGAATTTGAGGACAACAGGAACTTTGGGCAATGCTGGCTCTCTGGAT
---------+---------+---------+---------+---------+---------+ 289
SMG01_0069_G12.b : AGCATCTGTTTGATGAATTTGAGGACAACAGGAACTTTGGGCAATGCTGGCTCTCTGGAT
PST01_0019_B09.b : AGCATCTGTTTGATGAATTTGAGGACAACAGGAACTTTGGGCAATGCTGGCTCTCTGGAT
UTR01_0038_A11.b : AGCATCTGTTTGATGAATTTGAGGACAACAGGAACTTTGGGCAATGCTGGCTCTCTGGAT
LVR01_0003_H10.b : AGCATCTGTTTGATGAATTTGAGGACAACAGGAACTTTGGGCAATGCTGGCTCTCTGGAT
UTR01_0040_D03.b : AGCATCTGTTTGATGAATTTGAGGACAACAGGAACTTTGGGCAATGCTGGCTCTCTGGAT
20110601C-004555 : GATACCACCTATGAAAGGCTGGCCGAGGAGACGCTGGACTCCTTAGCAGAGTTTTTTGAA
---------+---------+---------+---------+---------+---------+ 349
SMG01_0069_G12.b : GATACCACCTATGAAAGGCTGGCCGAGGAGACGCTGGACTCCTTAGCAGAGTTTTTTGAT
PST01_0019_B09.b : GATACCACCTATGAAAGGCTGGCCGAGGAGACGCTGGACTCCTTAGCAGAGTTTTTTGAA
UTR01_0038_A11.b : GATACCACCTATGAAAGGCTGGCCGAGGAGACGCTGGACTCCTTAGCAGAGTTTTTTGAA
LVR01_0003_H10.b : GATACCACCTATGAAAGGCTGGCCGAGGAGACGCTGGACTCCTTAGCAGAGTTTTTTGAA
UTR01_0040_D03.b : GATACCACCTATGAAAGGCTGGCCGAGGAGACGCTGGACTCCTTAGCAGAGTTTTTTGAA
20110601C-004555 : GACCTTGCAGACAAACCTTTCACATTTGAAGACTATGATGTCTCCTTTGGGAGTGGCGTT
---------+---------+---------+---------+---------+---------+ 409
SMG01_0069_G12.b : GACCTTGCAGACAAACCTTTCACATTTGAAGACTATGATGTCTCCTTTGGGAGTGGCGTT
PST01_0019_B09.b : GACCTTGCAGACAAACCTTTCACATTTGAAGACTATGATGTCTCCTTTGGGAGTGGCGTT
UTR01_0038_A11.b : GACCTTGCAGACAAACCTTTCACATTTGAAGACTATGATGTCTCCTTTGGGAGTGGCGTT
LVR01_0003_H10.b : GACCTTGCAGACAAACCTTTCACATTTGAAGACTATGATGTCTCCTTTGGGAGTGGCGTT
UTR01_0040_D03.b : GACCTTGCAGACAAACCTTTCACATTTGAAGACTATGATGTCTCCTTTGGGAGTGGCATT
20110601C-004555 : TTAACCATTAAACTGGGTGGAGATCTAGGAACCTACGTGATCAACAAGCAGACCCCAAAC
---------+---------+---------+---------+---------+---------+ 469
SMG01_0069_G12.b : TTAACCATTAAACTGGGTGGAGATCTAGGAACCTACGTGATCAACAAGCAGACCCCAAAC
PST01_0019_B09.b : TTAACCATTAAACTGGGTGGAGATCTAGGAACCTACGTGATCAACAAGCAGACCCCAAAC
UTR01_0038_A11.b : TTAACCATTAAACTGGGTGGAGATCTAGGAACCTACGTGATCAACAAGCAGACCCCAAAC
LVR01_0003_H10.b : TTAACCATTAAACTGGGTGGAGATCTAGGAACCTACGTGATCAACAAGCAGACCCCAAAC
UTR01_0040_D03.b : TTAACCATTAAACTGGGTGGAGATCTAGGAACCTACGTGATCAACAAGCAGACCCCAAAC
20110601C-004555 : AAGCAAATCTGGTTATCTTCACCATCCAGTGGCCCCAAGCGCTACGACTGGACGGGGAGG
---------+---------+---------+---------+---------+---------+ 529
SMG01_0069_G12.b : AAGCAAATCTGGTTATCTTCACCATCCAGTGGCCCCAAGCGCTACGACTGGACGGGGAGG
PST01_0019_B09.b : AAGCAAATCTGGTTATCTTCACCATCCAGTGGCCCCAAGCGCTACGACTGGACGGGGAGG
UTR01_0038_A11.b : AAGCAAATCTGGTTATCTTCACCATCCAGTGGCCCCAAGCGCTACGACTGGACGGGGAGG
LVR01_0003_H10.b : AAGCAAATCTGGTTATCTTCACCATCCAGTGGCCCCAAGCGCTACGACTGGACGGGGAGG
UTR01_0040_D03.b : AAGCAAATCTGGTTATCTTCACCATCCAGTGGCCCCAAGCGCTACGACTGGACGGGGAGG
20110601C-004555 : AACTGGGTGTACTCCCACGACGGTGTGTCCCTCCACGAGCTGCTGGCCAGGGAGCTGACG
---------+---------+---------+---------+---------+---------+ 589
SMG01_0069_G12.b : AACTGGGTGTACTCCCACGACGGTGTGTCCCTCCACGAGCTGCTGGCCAGGGAGCTGACG
PST01_0019_B09.b : AACTGGGTGTACTCCCACGACGGTGTGTCCCTCCACGAGCTGCTGGCCAGGGAGCTGACG
UTR01_0038_A11.b : AACTGGGTGTACTCCCACGACGGTGTGTCCCTCCACGAGCTGCTGGCCAGGGAGCTGACG
LVR01_0003_H10.b : AACTGGGTGTACTCCCACGACGGTGTGTCCCTCCACGAGCTGCTGGCCAGGGAGCTGACG
UTR01_0040_D03.b : AACTGGGTGTACTCCCACGACGGTGTGTCCCTCCACGAGCTGCTGGCCAGGGAGCTGACG
20110601C-004555 : ACGGCCTTAAAAACCAAACTGGACTTATCTTCTCTGGCCTACTCTGGGAAAGGCACTTGC
---------+---------+---------+---------+---------+---------+ 649
SMG01_0069_G12.b : ACGGCCTTAAAAACCAAACTGGACTTATCTTCTCTGGCCTACTCTGGGAAAGGCACTTGC
PST01_0019_B09.b : ACGGCCTTAAAAACCAAACTGGACTTATCTTCTCTGGCCTACTCTGGGAAAGGCACTTGC
UTR01_0038_A11.b : ACGGCCTTAAAAACCAAACTGGACTTATCTTCTCTGGCCTACTCTGGGAAAGGCACTTGC
LVR01_0003_H10.b : ACGGCCTTAAAAACCAAACTGGACTTATCTTCTCTGGCCTACTCTGGGAAAGGCACTTGC
UTR01_0040_D03.b : ACGGCCTTAAAAACCAAACTGGACTTATCTTCTCTGGCCTACTCTGGGAAAGGCACTTGC
20110601C-004555 : TGCCCAGCCTAGTGCTAAAGACATTAAAAGCTCTACAGCCAAGACCCCAGCTTTGGCCTT
---------+---------+---------+---------+---------+---------+ 709
SMG01_0069_G12.b : TGCCCAGCCTAGTGCTAAAGACATAAAAAGCTCTACAGCCAAGACCCCAGCTTGGGCC*T
PST01_0019_B09.b : TGCCCAGCCTAGTGCTAAAGACATTAAAAGCTCTACAGCCAAGACCCCAGCTTTGGCCTT
UTR01_0038_A11.b : TGCCCAGCCTAGTGCTAAAGACATTAAAAGCTCTACAGCCAAGACCCCAGCTTTGGCCTT
LVR01_0003_H10.b : TGCCCAGCCTAGTGCTAAAGACATTAAAAGCTCTACAGCCAAGACCCCAGCTTTGGCCTT
UTR01_0040_D03.b : TGCCCAGCCTAGTGCTAAAGACATTAAAAGCTCTACAGCCAAGACCCCAGCTTTGGCCTT
20110601C-004555 : CAGCCGAATGGCTAGTTTTTTCCATTCTTGCCTTTGAGGACAGTTATATTGTGTGTAGCT
---------+---------+---------+---------+---------+---------+ 769
SMG01_0069_G12.b : CAGCCGAATGGCTAGNTTTTTCCCATTCTGCCTTTGAGGACAGTTATATTGTGTGTAGCT
PST01_0019_B09.b : CAGCCGAATGGCTAGTTTTTTCCATTCTTGCCTTTGAGGACAGTTATATTGTGTGTAGCT
UTR01_0038_A11.b : CAGCCGAATGGCTAGTTTTTTCCATTCTTGCCTTTGAGGACAGTTATATTGTGTGTAGCT
LVR01_0003_H10.b : CAGCCGAATGGCTAGTTTTTTCCATTCTTGCCTTTGAGGACAGTTATATTGTGTGTAGCT
UTR01_0040_D03.b : CAGCCGAATGGCTAGTTTTTTCCATTCTTGCCTTTGAGGACAGTTATATTGTGTGTAGCT
20110601C-004555 : GCTCTGTGAAAAGACTGTGTCGCCTCTCGCCCTGCCCCTGATTAATTTCCATAGAGTTTT
---------+---------+---------+---------+---------+---------+ 829
SMG01_0069_G12.b : GCTCTGTGAAAAGACTGTGGTCGCTCTCGCCCTGCCCCTGATTAATTTCCTAAAGttttt
PST01_0019_B09.b : GCTCTGTGAAAAGACTGTGTCGCCTCTCGCCCTNGCCCTGATTAATTTCCATAGAGtttt
UTR01_0038_A11.b : GCTCTGTGAAAAGACTGTGTCGCCTCTCGCCCTGCCCCTGATTAATTTCCATAGAGtttt
LVR01_0003_H10.b : GCTCTGTGAAAAGACTGTGTCGCCTCTCGCCCTGCCCCTGATTAATTTCCATAGAGtttt
UTR01_0040_D03.b : GCTCTGTGAAAAGACTGTGTCGCCTCTCGCCCTGCCCCTGATTAATTTCCATAGAGtttt
20110601C-004555 : TTTTTTTTTTTTTTTTTTTTTGGGATTTGTCTGCTTTCCCTTCCTCATGTGATACCCCCT
---------+---------+---------+---------+---------+---------+ 889
SMG01_0069_G12.b : ttttttttttttttttttttttggaattggcggcttccctccccagggggaaccccgaac
PST01_0019_B09.b : tttttttttttttttttttggatttgtctgctttccttcctcatgtgatacccctgatcc
UTR01_0038_A11.b : tttttttttttttttttttggatttgtctgctttccttcctcat
LVR01_0003_H10.b : tttttttttttttttttttttGGGATTTGTCTGCTTTCCCTTCCTCATGTGATACCCCCT
UTR01_0040_D03.b : ttttttttttttttttttggattcgtctgctttccttcctcatgtgatacc
20110601C-004555 : GATCCCTT....................................................
---------+---------+---------+---------+---------+---------+ 897
SMG01_0069_G12.b : ccttggagggcgggtgggccaaccttttggtacccccccccaagaaaaataaaagggcaa
PST01_0019_B09.b : cttgtaatgtctgtatgtccatactttatgtataaccccnccaccaagaaaataagaagg
UTR01_0038_A11.b :
LVR01_0003_H10.b : GATCCCTTggaatggctgtatgtccataaactttatgtataaaccccacaacaaaaaaaa
UTR01_0040_D03.b :
20110601C-004555 : ............................................................
---------+---------+---------+---------+---------+---------+ 897
SMG01_0069_G12.b : atcccgggggggaaaaaaaantaaaanaaaaaaaaannnagggcccttgggccaacttgg
PST01_0019_B09.b : acaattcccgggggaaaaagaattggcttccctatccttccttgaggacttactacaaaa
UTR01_0038_A11.b :
LVR01_0003_H10.b : aaataaaaagggacaaatacccaagggggaaaaaatgaattgggctttccctatttcatt
UTR01_0040_D03.b :
20110601C-004555 : ............................................................
---------+---------+---------+---------+---------+---------+ 897
SMG01_0069_G12.b : gggcgggccccttaaaatccccgggggcccaaatttggacccccttttttggaaaagggg
PST01_0019_B09.b : ctgcaggagtgaactgccaacctcgcatctggtcaaatgagatcataaaggtggccaagg
UTR01_0038_A11.b :
LVR01_0003_H10.b : tctttgaaaggaatttaacttaacaaaaacctggcgggaaaggggaaaccggggccaccc
UTR01_0040_D03.b :
20110601C-004555 : ............................................................
---------+---------+---------+---------+---------+---------+ 897
SMG01_0069_G12.b : cccctgtgggcgtttaaaaaggggggggggcttttaaacctgggggggaaaactttttgg
PST01_0019_B09.b : aatcccagggggcccaaaccaatctactgtatctgaaaagggattgtccctgccccatca
UTR01_0038_A11.b :
LVR01_0003_H10.b : ccccccccctcccctggtttccaaaaagtgaaaaacccccttttaaaggggggggggccc
UTR01_0040_D03.b :
20110601C-004555 : ............................................................
---------+---------+---------+---------+---------+---------+ 897
SMG01_0069_G12.b : tttttttagaaacccttctgggggggaagtggggacccccaccaatttgcccgggggaaa
PST01_0019_B09.b : gggtgggaaccggttaccgaactgggggagccaaaattggtcctcccattttgtggtgtg
UTR01_0038_A11.b :
LVR01_0003_H10.b : ttaaggggggaattttcccccttttggtgggggggcccccccccaaaaaaaaccccaaaa
UTR01_0040_D03.b :
20110601C-004555 : ............................................................
---------+---------+---------+---------+---------+---------+ 897
SMG01_0069_G12.b : aatttttggttggggggacaccccccgccgcggggagattttccaaaatataaaaataac
PST01_0019_B09.b : ggaaacgcacggactcaggtgcctcccgggacccctttgcgggggcctaaacaaaaaaaa
UTR01_0038_A11.b :
LVR01_0003_H10.b : aaaactcttaaaaacactttataaaaattttcccctccttagg
UTR01_0040_D03.b :
20110601C-004555 : ............................................................
---------+---------+---------+---------+---------+---------+ 897
SMG01_0069_G12.b : gcggggtgtttttgtg
PST01_0019_B09.b : agagcatgttcaatgggcgccccaaaaataaaaacaccccccccccaaaaaaaagagttg
UTR01_0038_A11.b :
LVR01_0003_H10.b :
UTR01_0040_D03.b :
20110601C-004555 : ............................................................
---------+---------+---------+---------+---------+---------+ 897
SMG01_0069_G12.b :
PST01_0019_B09.b : ttttttttctttgttaaaaaaacattcaaatttt
UTR01_0038_A11.b :
LVR01_0003_H10.b :
UTR01_0040_D03.b :