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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004624

Length: 936

Sequence:  [FASTA format sequence]
GGTGGGGCCC AGCCCACACT GGCTGTGAGG TCTCTTTCCG ATCCTCTGCC AGCCCCAGGG
GGACCAACAT GGCCCAAGAG CGTCCCAGTC CCGCCTTGGA GCCCGAGCAC GTCCAGCAGC
TGCTCTTCTC CTGCCGGGAG GCCAAGAAGT CCGCCTACTG CCCCTACAGT CGCTTCCCGG
TGGGGGCGGC CCTCCTCACC GGGGACGGGA GGATTTTCTC CGGGTGCAAC ATAGAAAATG
CCTGCTACCC GCTGGGCGTC TGTGCTGAAC GGACCGCCAT CCAGAAGGCC ATCTCAGAAG
GATACAAAGA GTTCAGGGCA ATTGCCATCG CCAGTGATCT GCAAGATGAT TTTATTTCGC
CATGCGGGGC CTGCAGGCAA GTCATGAGAG AGTTTGGCAC CAACTGGGCC GTCTACATGA
CCAAGCCGGA TGGCACATAC GTTGTCAGGA CCATCCAGGA GCTGCTACCG GCCTCCTTTG
GGCCCGAGGA CCTGCAGAAG ATCCAGTGAA AGGTGGAGAA CATCCTGGGA GACCCTGGGT
TCCCACATGT TGCTTAAGGG GACGGCCACC TGGAGAATTT CATGAGGACG TTCTCACGGA
CCTGGGGACT CCTGCCAAAT GGCCCCCAAG TCCACAGGCA CCAGGCGAGA TGACTTTTCC
AAATTACATT CGAGCATCAG ATTTCTACTG AAGTGATAAC GGGTTTTACG CCAGCCTGGG
TCAGAGCCCC ACGTTGCAAC TGCCTTGTCC TCCCTGGGGC TCAGAGCACC TCGTCCCTCC
CTTTCCTTCC TGTGGAGCCT CTTTAAAATT CCAACCAAGT CTGTGCTGCT TCCCCATCAG
CCTCCACAAG GTTCTAGCCT GCTTTGAGCG ACTTTTCTAA TTATAAACAT CATGGAGCGT
CCTGATTCAN GAGAAAAAAA AAAAAAAAAA AAAAAA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CDA	cytidine deaminase [Homo sapiens].	259	2e-69	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Cda	cytidine deaminase [Mus musculus].	280	9e-76	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC487393	PREDICTED: similar to cytidine deaminase [Canis familiaris].	251	7e-67	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		CDA	cytidine deaminase [Bos taurus].	280	1e-75	O
		CDA	PREDICTED: cytidine deaminase-like [Bos taurus].	280	1e-75	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100515954	PREDICTED: cytidine deaminase-like [Sus scrofa].	302	2e-82	O

Alignment:      TOP

20110601C-004624 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SPLT1_0084_H03.b :   ttttgggcgagacacgccgtaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPLT1_0086_C04.b : nnnccgcgattagaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
KDN01_0009_B06.b :                                                           nn
MLN01_0035_F09.b :                       ngctaggactatgacxxxxxxxxxxxxxxxxxxxxxxx


20110601C-004624 : GGTGGGGCCCAGCCCACACTGGCTGTGAGGTCTCTTTCCGATCCTCTGCCAGCCCCAGGG
                   ---------+---------+---------+---------+---------+---------+ 60
SPLT1_0084_H03.b : GGTGGGGCCCAGCCCACACTGGCTGTGAGGTCTCTTTCCGATCCTCTGCCAGCCCCAGGG
SPLT1_0086_C04.b : GGTGGGGCCCAGCCCACACTGGCTGTGAGGTCTCTTTCCGATCCTCTGCCAGCCCCAGGG
KDN01_0009_B06.b : cctcccnnnnnncctgcgttggctctggagnctctttccGATCCTCTGCC*GCCCCAGGG
MLN01_0035_F09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtggGATCCTCTGCCAGCCCCAGGG


20110601C-004624 : GGACCAACATGGCCCAAGAGCGTCCCAGTCCCGCCTTGGAGCCCGAGCACGTCCAGCAGC
                   ---------+---------+---------+---------+---------+---------+ 120
SPLT1_0084_H03.b : GGACCAACATGGCCCAAGAGCGTCCCAGTCCCGCCTTGGAGCCCGAGCACGTCCAGCAGC
SPLT1_0086_C04.b : GGACCAACATGGCCCAAGAGCGTCCCAGTCCCGCCTTGGAGCCCGAGCACGTCCAGCAGC
KDN01_0009_B06.b : GGAACAACATGGCCCAAGAGCGTCCCAGTCCCGCCTTGGAGCCCGAGCACGTCCAGCAGC
MLN01_0035_F09.b : GGACCAACATGGCCCAAGAGCGTCCCAGTCCCGCCTTGGAGCCCGAGCACGTCCAGCAGC


20110601C-004624 : TGCTCTTCTCCTGCCGGGAGGCCAAGAAGTCCGCCTACTGCCCCTACAGTCGCTTCCCGG
                   ---------+---------+---------+---------+---------+---------+ 180
SPLT1_0084_H03.b : TGCTCTTCTCCTGCCGGGAGGCCAAGAAGTCCGCCTACTGCCCCTACAGTCGCTTCCCGG
SPLT1_0086_C04.b : TGCTCTTCTCCTGCCGGGAGGCCAAGAAGTCCGCCTACTGCCCCTACAGTCGCTTCCCGG
KDN01_0009_B06.b : TGCTCCTCTCCTGCCGGGAGGCCAAGAAGTCCGCCTACTGCCCCTACAGTCGCTTCCCGG
MLN01_0035_F09.b : TGCTCCTCTCCTGCCGGGAGGCCAAGAAGTCCGCCTACTGCCCCTACAGTCGCTTCCCGG


20110601C-004624 : TGGGGGCGGCCCTCCTCACCGGGGACGGGAGGATTTTCTCCGGGTGCAACATAGAAAATG
                   ---------+---------+---------+---------+---------+---------+ 240
SPLT1_0084_H03.b : TGGGGGCGGCCCTCCTCACCGGGGACGGGAGGATTTTCTCCGGGTGCAACATAGAAAATG
SPLT1_0086_C04.b : TGGGGGCGGCCCTCCTCACCGGGGACGGGAGGATTTTCTCCGGGTGCAACATAGAAAATG
KDN01_0009_B06.b : TGGGGGCGGCCCTCCTCACCGGGGACGGGAGGATTTTCTCCGGGTGCAACATAGAAAATG
MLN01_0035_F09.b : TGGGGGCGGCCCTCCTCACCGGGGACGGGAGGATTTTCTCCGGGTGCAACATAGAAAATG


20110601C-004624 : CCTGCTACCCGCTGGGCGTCTGTGCTGAACGGACCGCCATCCAGAAGGCCATCTCAGAAG
                   ---------+---------+---------+---------+---------+---------+ 300
SPLT1_0084_H03.b : CCTGCTACCCGCTGGGCGTCTGTGCTGAACGGACCGCCATCCAGAAGGCCATCTCAGAAG
SPLT1_0086_C04.b : CCTGCTACCCGCTGGGCGTCTGTGCTGAACGGACCGCCATCCAGAAGGCCATCTCAGAAG
KDN01_0009_B06.b : CCTGCTACCCGCTGGGCGTCTGTGCTGAACGGACCGCCATCCAGAAGGCCATCTCAGAAG
MLN01_0035_F09.b : CCTGCTACCCGCTGGGCGTCTGTGCTGAACGGACCGCCATCCAGAAGGCCATCTCAGAAG


20110601C-004624 : GATACAAAGAGTTCAGGGCAATTGCCATCGCCAGTGATCTGCAAGATGATTTTATTTCGC
                   ---------+---------+---------+---------+---------+---------+ 360
SPLT1_0084_H03.b : GATACAAAGAGTTCAGGGCAATTGCCATCGCCAGTGATCTGCAAGATGATTTTATTTCGC
SPLT1_0086_C04.b : GATACAAAGAGTTCAGGGCAATTGCCATCGCCAGTGATCTGCAAGATGATTTTATTTCGC
KDN01_0009_B06.b : GATACAAAGAGTTCAGGGCAATTGCCATCGCCAGTGATCTGCAAGATGATTTTATTTCGC
MLN01_0035_F09.b : GATACAAAGAGTTCAGGGCAATTGCCATCGCCAGTGATCTGCAAGATGATTTTATTTCGC


20110601C-004624 : CATGCGGGGCCTGCAGGCAAGTCATGAGAGAGTTTGGCACCAACTGGGCCGTCTACATGA
                   ---------+---------+---------+---------+---------+---------+ 420
SPLT1_0084_H03.b : CATGCGGGGCCTGCAGGCAAGTCATGAGAGAGTTTGGCACCAACTGGGCCGTCTACATGA
SPLT1_0086_C04.b : CATGCGGGGCCTGCAGGCAAGTCATGAGAGAGTTTGGCACCAACTGGGCCGTCTACATGA
KDN01_0009_B06.b : CATGCGGGGCCTGCAGGCAAGTCATGAGAGAGTTTGGCACCAACTGGGCCGTCTACATGA
MLN01_0035_F09.b : CATGCGGGGCCTGCAGGCAAGTCATGAGAGAGTTTGGCACCAACTGGGCCGTCTACATGA


20110601C-004624 : CCAAGCCGGATGGCACATACGTTGTCAGGACCATCCAGGAGCTGCTACCGGCCTCCTTTG
                   ---------+---------+---------+---------+---------+---------+ 480
SPLT1_0084_H03.b : CCAAGCCGGATGGCACATACGTTGTCAGGACCATCCAGGAGCTGCTACCGGCCTCCTTTG
SPLT1_0086_C04.b : CCAAGCCGGATGGCACATACGTTGTCAGGACCATCCAGGAGCTGCTACCGGCCTCCTTTG
KDN01_0009_B06.b : CCAAGCCGGATGGCACATACGTTGTCAGGACCATCCAGGAGCTGCTACCGGCCTCCTTTG
MLN01_0035_F09.b : CCAAGCCGGATGGCACATACGTTGTCAGGACCATCCAGGAGCTGCTACCGGCCTCCTTTG


20110601C-004624 : GGCCCGAGGACCTGCAGAAGATCCAGTGAAAGGTGGAGAACATCCTGGGAGACCCTGGGT
                   ---------+---------+---------+---------+---------+---------+ 540
SPLT1_0084_H03.b : GGCCCGAGGACCTGCAGAAGATCCAGTGAAAGGTGGAGAACATCCTGGGAGACCCTGGGT
SPLT1_0086_C04.b : GGCCCGAGGACCTGCAGAAGATCCAGTGAAAGGTGGAGAACATCCTGGGAGACCCTGGGT
KDN01_0009_B06.b : GGCCCGAGGACCTGCAGAAGATCCAGTGAAAGGTGGAGAACATCCTGGGAGACCCTGGGT
MLN01_0035_F09.b : GGCCCGAGGACCTGCAGAAGATCCAGTGAAAGGTGGAGAACATCCTGGGAGACCCTGGGT


20110601C-004624 : TCCCACATGTTGCTTAAGGGGACGGCCACCTGGAGAATTTCATGAGGACGTTCTCACGGA
                   ---------+---------+---------+---------+---------+---------+ 600
SPLT1_0084_H03.b : TTCCACATGTTGCTTAAGGGGACGGCCACCTGNAGAATTTCATGAGGACGTTCTCACAGA
SPLT1_0086_C04.b : TCCCACATGTTGCTTAAGGGGACGGCCACCTGGAGAATTTCATGAGGACGTTCTCACAGA
KDN01_0009_B06.b : TCCCACATGTTGCTTAAGGGGACGGCCACCTGGAGAATTTCATGAGGACGTTCTCACGGA
MLN01_0035_F09.b : TCCCACATGTTGCTTAAGGGGACGGCCACCTGGAGAATTTCATGAGGACGTTCTCACGGG


20110601C-004624 : CCTGGGGACTCCTGCCAAATGGCCCCCAAGTCCACAGGCACCAGGCGAGATGACTTTTCC
                   ---------+---------+---------+---------+---------+---------+ 660
SPLT1_0084_H03.b : CCTGGGGACTCCTGCCAAATGGCCCCCAAGTCCACAGGCACCAAGCGAGATGACTTTTCA
SPLT1_0086_C04.b : CCTGGGGACTCCTGCCAAATGGCCCCCAAGTCCACAGGCACCAGGCGAGATGACTTTTCC
KDN01_0009_B06.b : CCTGGGGACTCCTGCCAAATGGCCCCCAAGTCCACAGGCACCAGGCGAGATGACTTTTCC
MLN01_0035_F09.b : CCTGGGGACTCCTGCCAAATGGCCCCCAAGTCCACAGGCACCAGGCGAGATGACTTTTCC


20110601C-004624 : AAATTACATTCGAGCATCAGATTTCTACTGAAGTGATAACGGGTTTTACGCCAGCCTGGG
                   ---------+---------+---------+---------+---------+---------+ 720
SPLT1_0084_H03.b : AAATAAC*TTCGAGCATCAAATATCTACTGGAATGATAACGGGTTTAACCCCAGCCTGGG
SPLT1_0086_C04.b : AAATTACATTCGAGCATCAGATATCTACTGAAGTGATAACGGGTTTTACGCCAGCCTGGG
KDN01_0009_B06.b : AAATTACATTCGAGCATCAGATTTCTACTGAAGTGATAACGGGTTTTACGCCAGCCTGGG
MLN01_0035_F09.b : AAATTACATTCGAGCATCAGATTTCTACTGAAGTGATAACGGGTTTTACGCCAGCCTGGG


20110601C-004624 : TCAGAGCCCCACGTTGCAACTGCCTTGTCCTCCCTGGGGCTCAGAGCACCTCGTCCCTCC
                   ---------+---------+---------+---------+---------+---------+ 780
SPLT1_0084_H03.b : TCA*AACCCCCCGTTGCAACTGCCTTGTCCTCCCTGGGGCTTAAAACACCTCGTCCCTCC
SPLT1_0086_C04.b : TCAGAGCCCCACGTTGCAACTGCCTTGTCCTCCCTGGGGCTCAGAGCACCTCGTCCCTCC
KDN01_0009_B06.b : TCAGAGCCCCACGTTGCAACTGCCTTGTCCTCCCTGGGGCTCAGAGCACCTCGTCCCTCC
MLN01_0035_F09.b : TCAGAGCCCCACGTTGCAACTGCCTTGTCCTCCCTGGGGCTCAGAGCACCTCGTCCCTCC


20110601C-004624 : CTTTCCTTCCTGTGGAGCCTCTTTAAAATTCCAACCAAGTCTGTGCTGCTTCCCCATCAG
                   ---------+---------+---------+---------+---------+---------+ 840
SPLT1_0084_H03.b : CCTTCCTTCCgggggaaccccctttaaaattcaaccaagtcggggggggtttccataacc
SPLT1_0086_C04.b : CTTTCCTTCCTGTGGAGCCTCTTAAAAATTCCATCCCAGTCTGTGCTGCTTT**CATCAC
KDN01_0009_B06.b : CTTTCCTTCCTGTGGAGCCTCTTTAAAATTCCAACCAAGTCTGTGCTGCTTCCCCATCAG
MLN01_0035_F09.b : CTTTCCTTCCTGTGGAGCCTCTTTAAAGTTCC*ACCAAGTCTGTGCTGCTTCCCCATCAG


20110601C-004624 : CCTCCACAAGGTTCTAGCCTGCTTTGAGCGACTTTTCTAATTATAAACATCATGGAGCGT
                   ---------+---------+---------+---------+---------+---------+ 900
SPLT1_0084_H03.b : ctccaaaaggttttaacgggttttgaacgacttttttaattataaacttccgggaccctc
SPLT1_0086_C04.b : CCTCCACA*GGTTCTAGCCTGCTTTAAGCGACTTTTCTAATTATAAACATCATGGgacca
KDN01_0009_B06.b : CCTCCACAAGGTTCTAGCCTGCTTTGAGCGACTTTTCTAATTATAAACATCATGGAGCGT
MLN01_0035_F09.b : CCTCCACAAGGTTCTAGCCTGCTTTGAGCGACTTTTCTAATTATAAACATCATGGAACGT


20110601C-004624 : CCTGATTCANGAGAAAAAAAAAAAAAAAAAAAAAAA........................
                   ---------+---------+---------+---------+---------+---------+ 936
SPLT1_0084_H03.b : cctgtttcgggaaaaaaannnaanaannaaaaaaaaaaaaaaaaacaaacacaanaaaaa
SPLT1_0086_C04.b : tccggattcagggagaaaaaaanaaaaaanaaaaaa                       
KDN01_0009_B06.b : CCTGATTCANGAGaaaaaaaaaaaaaaaaaaaaaaaxxxxxxxxxxxxxxxxxxxxxxxx
MLN01_0035_F09.b : Cttgaaaaaaaaaaaaaaaaaaaagggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-004624 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
SPLT1_0084_H03.b : annaaanannnannnnnnnnannnnnnnnnncnnccacccnnnnnnggggccggggcgcc
SPLT1_0086_C04.b :                                                             
KDN01_0009_B06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLN01_0035_F09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-004624 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
SPLT1_0084_H03.b : ggcattcccctctttgggggggttttttgcgccaaaccaaaataaaaaattttggggggt
SPLT1_0086_C04.b :                                                             
KDN01_0009_B06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLN01_0035_F09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-004624 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
SPLT1_0084_H03.b : tggcaaccccccccccaggggggggggaaaaaaattctttttttattagaaatagaggcc
SPLT1_0086_C04.b :                                                             
KDN01_0009_B06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgtccaatcacag
MLN01_0035_F09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-004624 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
SPLT1_0084_H03.b : atttttttttattccaacacccaaacccccaaaaaatattttcccatcttgttttttttg
SPLT1_0086_C04.b :                                                             
KDN01_0009_B06.b : ggatctacaggctggatcccgggacgagaccaataatctcttcctctcctcagaaacctg
MLN01_0035_F09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-004624 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
SPLT1_0084_H03.b : tttt                                                       
SPLT1_0086_C04.b :                                                             
KDN01_0009_B06.b : cccggcgttggtggggagggtattcctagggggaaggtttcccatccggaacccgaaaaa
MLN01_0035_F09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-004624 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
SPLT1_0084_H03.b :                                                             
SPLT1_0086_C04.b :                                                             
KDN01_0009_B06.b : ttgtaagcgcaagcaactaaagggttgggttttgttcctccgccaaccctcagggacgga
MLN01_0035_F09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-004624 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
SPLT1_0084_H03.b :                                                             
SPLT1_0086_C04.b :                                                             
KDN01_0009_B06.b : aaaaancggcgcgccccccctcccccggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
MLN01_0035_F09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn             


20110601C-004624 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
SPLT1_0084_H03.b :                                                             
SPLT1_0086_C04.b :                                                             
KDN01_0009_B06.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
MLN01_0035_F09.b :                                                             


20110601C-004624 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
SPLT1_0084_H03.b :                                                             
SPLT1_0086_C04.b :                                                             
KDN01_0009_B06.b : nnnnnnn                                                    
MLN01_0035_F09.b :