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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004627

Length: 832

Sequence:  [FASTA format sequence]
GAGTTCCCTG CGGCGGTCTA GGAGAAGCCA GGCCTGGAAG CCTCCGTTGA GACCGGAGAG
ACCCGGCGCC TCTACTGCCC ACTGCCCAGT CAAGATGGGG TTTATATTTT CAAAATCTAT
GAATGAGAAC ATGAAACGCC AACAGGAGTT CATGCTTATG AATACTCGGC TTCAGCTGGA
AAGGCAGCTC ATCATGCAGA ATGAAATGAG AGAAAGACAA ATGGCTATGC AGATTGCTTG
GTCTCGGGAA TTCCTCAAAT ATTTTGGAAC GTTTTTTGGC ATTGCAAGCG TTGCTTTAAC
AGCTGGAGCA ATAAAAAGGA AGAAGCCAGC CTTCTTCCTC CCTATCATTC CATTAGGCTT
TGTCTTTACC TACCAGTATG ACCTGGGCTA TGGAACCCTG CTACAAAGAA TGAAAGGTGA
AGCTGAGAAC ATACTGGAAA CAGAAACGAG TAAGTTGCAG CTGCCAAAAG GAATGATCAC
TTTTGAAGGT CTTGAAAAAG CAAGAAGGGA ACAGAGTAAA TTCTTCATAG ATAAATGAAA
TCATGTTTAC CCAGAACTTC TCAAAACACA GAATTGTTGA CTTGAATCAT GGCCTTTACA
ATTTTTAAAT ACTTGAGATT TTGATATAAT GGATTTTATT TTAAAATAAT AAAATGCAAG
ATGAGTTTTG TTAAACTATT TTAAAATAAA ATTTGTAACA TTCAACACAA AATCATGGAA
GTACTATAAA TAACTTTCAG ATTTCCTATA TATGTGTGTA ATTACAAATA TCTAAATGTA
AAATTAATAA ACTACATTGT TGTGAATTCC TGGAAAAAAA AAAAAAAAAA AA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		C9orf46	transmembrane protein C9orf46 [Homo sapiens].	257	1e-68	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		5033414D02Rik	transmembrane protein C9orf46 homolog [Mus musculus].	248	4e-66	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC609677	PREDICTED: similar to Protein C9orf46 [Canis familiaris].	268	4e-72	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		C8H9orf46	transmembrane protein C9orf46 homolog [Bos taurus].	258	3e-69	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		C1H9orf46	transmembrane protein C9orf46 [Sus scrofa].	291	2e-79	O

Alignment:      TOP

20110601C-004627 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
BMWN1_0050_E08.b :   nnnnccgcaggtacgaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
HTMT1_0014_B01.b : tttttggcaggtagaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
HTMT1_0062_B02.b :   ttttgcgagagtagaggccxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
HTMT1_0133_E10.b :                        nggtaatttntnnnggacggtagacgxxxxxxxxxxx


20110601C-004627 : ...GAGTTCCCTGCGGCGGTCTAGGAGAAGCCAGGCCTGGAAGCCTCCGTTGAGACCGGA
                   ---------+---------+---------+---------+---------+---------+ 57
BMWN1_0050_E08.b : xxxGAGTTCCCTGCGGCGGTCTAGGAGAAGCCAGGCCTGGAAGCCTCCGTTGAGACCGGA
HTMT1_0014_B01.b : xxxGAGTTCCCTGCGGCGGTCTAGGAGAAGCCAGGCCTGGAAGCCTCCGTTGAGACCGGA
HTMT1_0062_B02.b : xxxGAGTTCCCTGCGGCGGTCTAGGAGAAGCCAGGCCTGGAAGCCTCCGTTGAGACCGGA
HTMT1_0133_E10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgAGGCCTGGAAGCCTCCGTTGAGACCGGA


20110601C-004627 : GAGACCCGGCGCCTCTACTGCCCACTGCCCAGTCAAGATGGGGTTTATATTTTCAAAATC
                   ---------+---------+---------+---------+---------+---------+ 117
BMWN1_0050_E08.b : CAGACCCGGCGCCTCTACTGCCCACTGCCCAGTCAAGATGGGGTTTATATTTTCAAAATC
HTMT1_0014_B01.b : GAGACCCGGCGCCTCTACTGCCCACTGCCCAGTCAAGATGGGGTTTATATTTTCAAAATC
HTMT1_0062_B02.b : GAGACCCGGCGCCTCTACTGCCCACTGCCCAGTCAAGATGGGGTTTATATTTTCAAAATC
HTMT1_0133_E10.b : GAGACCCGGCGCCTCTACTGCCCACTGCCCAGTCAAGATGGGGTTTATATTTTCAAAATC


20110601C-004627 : TATGAATGAGAACATGAAACGCCAACAGGAGTTCATGCTTATGAATACTCGGCTTCAGCT
                   ---------+---------+---------+---------+---------+---------+ 177
BMWN1_0050_E08.b : TATGAATGAGAACATGAAACGCCAACAGGAGTTCATGCTTATGAATACTCGGCTTCAGCT
HTMT1_0014_B01.b : TATGAATGAGAACATGAAACGCCAACAGGAGTTCATGCTTATGAATACTCGGCTTCAGCT
HTMT1_0062_B02.b : TATGAATGAGAACATGAAACGCCAACAGGAGTTCATGCTTATGAATACTCGGCTTCAGCT
HTMT1_0133_E10.b : TATGAATGAGAACATGAAACGCCAACAGGAGTTCATGCTTATGAATACTCGGCTTCAGCT


20110601C-004627 : GGAAAGGCAGCTCATCATGCAGAATGAAATGAGAGAAAGACAAATGGCTATGCAGATTGC
                   ---------+---------+---------+---------+---------+---------+ 237
BMWN1_0050_E08.b : GGAAAGGCAGCTCATCATGCAGAATGAAATGAGAGAAAGACAAATGGCTATGCAGATTGC
HTMT1_0014_B01.b : GGAAAGGCAGCTCATCATGCAGAATGAAATGAGAGAAAGACAAATGGCTATGCAGATTGC
HTMT1_0062_B02.b : GGAAAGGCAGCTCATCATGCAGAATGAAATGAGAGAAAGACAAATGGCTATGCAGATTGC
HTMT1_0133_E10.b : GGAAAGGCAGCTCATCATGCAGAATGAAATGAGAGAAAGACAAATGGCTATGCAGATTGC


20110601C-004627 : TTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAAGCGTTGCTTT
                   ---------+---------+---------+---------+---------+---------+ 297
BMWN1_0050_E08.b : TTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAAGTGTTGCTTT
HTMT1_0014_B01.b : TTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAAGCGTTGCTTT
HTMT1_0062_B02.b : TTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAAGCGTTGCTTT
HTMT1_0133_E10.b : TTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAAGTGTTGCTTT


20110601C-004627 : AACAGCTGGAGCAATAAAAAGGAAGAAGCCAGCCTTCTTCCTCCCTATCATTCCATTAGG
                   ---------+---------+---------+---------+---------+---------+ 357
BMWN1_0050_E08.b : AACAGCTGGAGCAATAAAAAGGAAGAAGCCAGCCTTCTTCCTCCCTATCATTCCATTAGG
HTMT1_0014_B01.b : AACAGCTGGAGCAATAAAAAGGAAGAAGCCAGCCTTCTTCCTCCCTATCATTCCATTAGG
HTMT1_0062_B02.b : AACAGCTGGAGCAATAAAAAGGAAGAAGCCAGCCTTCTTCCTCCCTATCATTCCATTAGG
HTMT1_0133_E10.b : AACAGCTGGAGCAATAAAAAGGAAGAAGCCAGCCTTCTTCCTCCCTATCATTCCATTAGG


20110601C-004627 : CTTTGTCTTTACCTACCAGTATGACCTGGGCTATGGAACCCTGCTACAAAGAATGAAAGG
                   ---------+---------+---------+---------+---------+---------+ 417
BMWN1_0050_E08.b : CTTTGTCTTTACCTACCAGTATGACCTGGGCTATGGAACCCTGCTACAAAGAATGAAAGG
HTMT1_0014_B01.b : CTTTGTCTTTACCTACCAGTATGACCTGGGCTATGGAACCTTGCTACAAAGAATGAAAGG
HTMT1_0062_B02.b : CTTTGTCTTTACCTACCAGTATGACCTGGGCTATGGAACCTTGCTACAAAGAATGAAAGG
HTMT1_0133_E10.b : CTTTGTCTTTACCTACCAGTATGACCTGGGCTATGGAACCCTGCTACAAAGAATGAAAGG


20110601C-004627 : TGAAGCTGAGAACATACTGGAAACAGAAACGAGTAAGTTGCAGCTGCCAAAAGGAATGAT
                   ---------+---------+---------+---------+---------+---------+ 477
BMWN1_0050_E08.b : TGAAGCTGAGAACATACTGGAAACAGAAACGAGTAAGTTGCAGCTGCCAAAAGGAATGAT
HTMT1_0014_B01.b : TGAAGCTGAGAACATACTGGAAACAGAAACGAGTAAGTTGCAGCTGCCAAAAGGAATGAT
HTMT1_0062_B02.b : TGAAGCTGAGAACATACTGGAAACAGAAACGAGTAAGTTGCAGCTGCCAAAAGGAATGAT
HTMT1_0133_E10.b : TGAAGCTGAGAACATACTGGAAACAGAAACGAGTAAGTTGCAGCTGCCAAAAGGAATGAT


20110601C-004627 : CACTTTTGAAGGTCTTGAAAAAGCAAGAAGGGAACAGAGTAAATTCTTCATAGATAAATG
                   ---------+---------+---------+---------+---------+---------+ 537
BMWN1_0050_E08.b : CACTTTTGAAGGTCTTGAAAAAGCAAGAAGGGAACAGAGTAAATTCTTCATAGATAAATG
HTMT1_0014_B01.b : CACTTTTGAAGGTCTTGAAAAAGCAAGAAGGGAACAGAGTAAATTCTTCATAGATAAATG
HTMT1_0062_B02.b : CACTTTTGAAGGTCTTGAAAAAGCAAGAAGGGAACAGAGTAAATTCTTCATAGATAAATG
HTMT1_0133_E10.b : CACTTTTGAAGGTCTTGAAAAAGCAAGAAGGGAACAGAGTAAATTCTTCATAGATAAATG


20110601C-004627 : AAATCATGTTTACCCAGAACTTCTCAAAACACAGAATTGTTGACTTGAATCATGGCCTTT
                   ---------+---------+---------+---------+---------+---------+ 597
BMWN1_0050_E08.b : AAATCATGTTTACCCAGAACTTCTCAAAACACAGAATTGTTGACTTGAATCATGGCCTTT
HTMT1_0014_B01.b : AAATCATGTTTACCCAGAACTTCTCAAAACACAGAATTGTTGACTTGAATCATGGCCTTT
HTMT1_0062_B02.b : AAATCATGTTTACCCAGAACTTCTCAAAACACAGAATTGTTGACTTGAATCATGGCCTTT
HTMT1_0133_E10.b : AAATCATGTTTACCCAGAACTTCTCAAAACACAGAATTGTTGACTTGAATCATGGCCTTT


20110601C-004627 : ACAATTTTTAAATACTTGAGATTTTGATATAATGGATTTTATTTTAAAATAATAAAATGC
                   ---------+---------+---------+---------+---------+---------+ 657
BMWN1_0050_E08.b : ACAATTTTTAAATACTTGAGATTTTGATATAATGGattttattttaaaataataaaatGC
HTMT1_0014_B01.b : ACAATTTTTAAATACTTGAGATTTTGATATAATGGattttattttaaaataataaaatGC
HTMT1_0062_B02.b : ACAATTTTTAAATACTTGAGATTTTGATATAATGGattttattttaaaataataaaatGC
HTMT1_0133_E10.b : ACAATTTTTAAATACTTGAGATTTTGATATAATGGattttattttaaaataataaaatGC


20110601C-004627 : AAGATGAGTTTTGTTAAACTATTTTAAAATAAAATTTGTAACATTCAACACAAAATCATG
                   ---------+---------+---------+---------+---------+---------+ 717
BMWN1_0050_E08.b : AAGATGAGTTTTGTTAAACTATTTTAAAATAAAATTTGTAACATTCAACACAAAATCATG
HTMT1_0014_B01.b : AAGATGAGTTTTGTTAAACTATTTTAAAATAAAATTTGTAACATTCAACACAAAATCATG
HTMT1_0062_B02.b : AAGATGAGTTTTGTTAAACTATTTTAAAATAAAATTTGTAACATTCAACACAAAATCATG
HTMT1_0133_E10.b : AAGATGAGTTTTGTTAAACTATTTTAAAATAAAATTTGTAACATTCAACACAAAATCATG


20110601C-004627 : GAAGTACTATAAATAACTTTCAGATTTCCTATATATGTGTGTAATTACAAATATCTAAAT
                   ---------+---------+---------+---------+---------+---------+ 777
BMWN1_0050_E08.b : GAAGTACTATAAATAACTTTCAGATTTCCTATATATGTGTGTAATTACAAATATCTAAAT
HTMT1_0014_B01.b : GAAGTACTATAAATAACTTTCAGATTTCCTATATATGTGTGTAATTACAAATATCTAAAT
HTMT1_0062_B02.b : GAAGTACTATAAATAACTTTCAGATTTCCTATATATGTGTGTAATTACAAATATCTAAAT
HTMT1_0133_E10.b : GAAGTACTATAAATAACTTTCAGATTTCCTATATATGTGTGTAATTACAAATATCTAAAT


20110601C-004627 : GTAAAATTAATAAACTACATTGTTGTGAATTCCTGGAAAAAAAAAAAAAAAAAAA.....
                   ---------+---------+---------+---------+---------+---------+ 832
BMWN1_0050_E08.b : GTAAAATTAATAAACTACATTGTTGTGaaaaaaaaaaaaaaaaaaaaaan         
HTMT1_0014_B01.b : GTAAAATTAATAAACTACATTGTTGTGAAttcctggaaaaaaaaaaaaaaaa       
HTMT1_0062_B02.b : GTAAAATTAATAAACTACATTGTTGTGAATTCCTGGAAGCAAAAAAAAAAAAAAA    
HTMT1_0133_E10.b : GTAAAATTAATAAACTACATTGTTGTGAATTCCTGGAAAAAAAAAAAAAAAAa