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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004724

Length: 668

Sequence:  [FASTA format sequence]
GACAGAACAC AGGAGGGTTC TGAAGCTTCT GGGTCCTCTC CTCTGAGCTC CGGGCAAGTC
TCTCCTCCGC CAAGACCATG AAGCTCTGCG TGACTGTCCT CTCCCTCCTG GTCCTGGTCG
CTGCCTTCTG CTCTCCAGCG CTCTCAGCAC CAATGGGCTC AGACCCCCCC ACCTCCTGCT
GCTTCACATA CACCGTGCGG AAGCTTCCTC GCAACTTCGT GACTGATTAC TATGAGACCA
GCAGCCTCTG CTCCCAGCCA GCCGTGGTAT TCCAGACCAA AAAGGGCAGG CAGGTCTGCG
CCAACCCCAG TGATGACTGG GTCCAGGAGT ACATGGATGA CCTGGAACTG AACTGAGCTG
CTCTGAACCC GGGGAAGGTG TCCTCCAGGG AAAGTCACCT GAGCCCGACG CTTCTCAGCA
AGACGCACCT TCTCGAGACT CCTGACTCCG CTCAGTAGTC GCTATTCCTT TTCCTAACTT
AATCTGTATT ACATGCTGTG TTGCTGTATT TGGTGTTCTT TCCCCTTATT TATGCTTTTT
TTTTTTAACC CAAGGACATT TGTCCCCCAT GGGGATGGTC CACCATCACT ATTTCTCTGC
TATTGTAGAT ACACGGATAA TGCCCTTGAT TCCAAGTGTT TTCATAATAA AACCTTTAAA
AATACAAA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CCL4	C-C motif chemokine 4 isoform 1 precursor [Homo sapiens].	147	6e-36	O
		CCL4L1	C-C motif chemokine 4-like precursor [Homo sapiens].	146	2e-35	O
		CCL4L2	chemokine (C-C motif) ligand 4-like 2 precursor [Homo sapiens].	146	2e-35	O
		CCL3L1	C-C motif chemokine 3-like 1 precursor [Homo sapiens].	117	7e-27	O
		CCL3L3	C-C motif chemokine 3-like 1 precursor [Homo sapiens].	117	7e-27	O
		CCL3	C-C motif chemokine 3 precursor [Homo sapiens].	105	3e-23	O
		CCL5	C-C motif chemokine 5 precursor [Homo sapiens].	91.7	5e-19	O
		CCL14	C-C motif chemokine 14 isoform 1 precursor [Homo sapiens].	91.7	5e-19	O
		CCL14	C-C motif chemokine 14 isoform 2 precursor [Homo sapiens].	90.5	1e-18	O
		CCL18	C-C motif chemokine 18 precursor [Homo sapiens].	77.4	1e-14	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Ccl4	C-C motif chemokine 4 [Mus musculus].	137	7e-33	O
		Ccl3	C-C motif chemokine 3 [Mus musculus].	109	2e-24	O
		Ccl5	C-C motif chemokine 5 precursor [Mus musculus].	89	3e-18	O
		Ccl2	C-C motif chemokine 2 [Mus musculus].	63.2	2e-10	O
		Ccl11	eotaxin precursor [Mus musculus].	59.7	2e-09	O
		Ccl9	C-C motif chemokine 9 precursor [Mus musculus].	57.4	9e-09	O
		LOC100503254	PREDICTED: c-C motif chemokine 8-like [Mus musculus].	56.6	2e-08	O
		Ccl8	C-C motif chemokine 8 precursor [Mus musculus].	56.6	2e-08	O
		Ccl24	C-C motif chemokine 24 precursor [Mus musculus].	55.1	5e-08	O
		Ccl6	C-C motif chemokine 6 precursor [Mus musculus].	51.6	5e-07	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		CCL4	C-C motif chemokine 4 precursor [Canis lupus familiaris].	154	5e-38	O
		LOC480600	PREDICTED: similar to Small inducible cytokine A3-like 1 precursor (Tonsillar lymphocyte LD78 beta protein) (LD78-beta(1-70)) (G0/G1 switch regulatory protein 19-2) (G0S19-2 protein) (PAT 464.2) [Canis familiaris].	111	5e-25	O
		CCL3	C-C motif chemokine 3 precursor [Canis lupus familiaris].	100	1e-21	O
		LOC480603	PREDICTED: similar to chemokine (C-C motif) ligand 14 isoform 1 precursor [Canis familiaris].	88.6	5e-18	O
		CCL5	C-C motif chemokine 5 precursor [Canis lupus familiaris].	85.9	3e-17	O
		CCL8	C-C motif chemokine 8 precursor [Canis lupus familiaris].	68.9	4e-12	O
		CCL26	C-C motif chemokine 26 precursor [Canis lupus familiaris].	67.8	8e-12	O
		CCL7	C-C motif chemokine 7 [Canis lupus familiaris].	66.2	2e-11	O
		LOC480602	PREDICTED: similar to Small inducible cytokine A23 precursor (CCL23) (Macrophage inflammatory protein 3) (MIP-3) (Myeloid progenitor inhibitory factor-1) (MPIF-1) (CK-beta-8) (CKB-8) [Canis familiaris].	63.9	1e-10	O
		LOC480601	PREDICTED: similar to Small inducible cytokine A4 precursor (CCL4) (Macrophage inflammatory protein 1-beta) (MIP-1-beta) [Canis familiaris].	63.5	2e-10	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		CCL4	C-C motif chemokine 4 precursor [Bos taurus].	155	3e-38	O
		CCL3	C-C motif chemokine 3 precursor [Bos taurus].	121	5e-28	O
		LOC616364	PREDICTED: chemokine (C-C motif) ligand 3-like [Bos taurus].	112	2e-25	O
		LOC616364	PREDICTED: chemokine (C-C motif) ligand 3-like [Bos taurus].	112	2e-25	O
		LOC525415	PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 2 [Bos taurus].	106	2e-23	O
		LOC525415	PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 2 [Bos taurus].	106	2e-23	O
		LOC525415	PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 1 [Bos taurus].	104	8e-23
		LOC525415	PREDICTED: macrophage inflammatory protein-1 alpha-like [Bos taurus].	104	8e-23
		CCL5	C-C motif chemokine 5 precursor [Bos taurus].	90.9	9e-19	O
		CCL14	C-C motif chemokine 14 [Bos taurus].	83.6	1e-16	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		CCL4	C-C motif chemokine 4 precursor [Sus scrofa].	169	1e-42	O
		CCL3L1	C-C motif chemokine 3-like 1 [Sus scrofa].	126	1e-29	O
		LOC100515857	PREDICTED: c-C motif chemokine 3-like [Sus scrofa].	95.9	2e-20	O
		CCL5	C-C motif chemokine 5 [Sus scrofa].	90.9	6e-19	O
		LOC100516223	PREDICTED: c-C motif chemokine 14-like [Sus scrofa].	81.6	3e-16	O
		LOC100625025	PREDICTED: c-C motif chemokine 23-like [Sus scrofa].	73.9	7e-14	O
		LOC100516039	PREDICTED: c-C motif chemokine 23-like [Sus scrofa].	73.9	7e-14	O
		LOC100516396	PREDICTED: LOW QUALITY PROTEIN: c-C motif chemokine 16-like [Sus scrofa].	68.2	4e-12	O
		LOC780409	chemokine ligand 26-like protein [Sus scrofa].	66.6	1e-11	O
		CCL2	C-C motif chemokine 2 precursor [Sus scrofa].	63.9	7e-11	O

Alignment:      TOP

20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
BMWN1_0032_H06.b : tttttacgcggtaagacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPLT1_0029_D11.b :  nnnaacctagtagaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ILNT1_0054_H06.b :       nnggacagtacgaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0029_H04.b :  ttttagcagagtagacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-004724 : .GACAGAACACAGGAGGGTTCTGAAGCTTCTGGGTCCTCTCCTCTGAGCTCCGGGCAAGT
                   ---------+---------+---------+---------+---------+---------+ 59
BMWN1_0032_H06.b : xGACAGAACACAGGAGGGTTCTGAAGCTTCTGGGTCCTCTCCTCTGAGCTCCGGGCAAGT
SPLT1_0029_D11.b : xgacaGAACACAGGAGGGTTCTGAAGCTTCTGGGTCCTCTCCTCTGAGCTCCGGGCAAGT
ILNT1_0054_H06.b : xxxxgGAACACAGGAGGGTTCTGAAGCTTCTGGGTCCTCTCCTCTGAGCTCCGGGCAAGT
BMWN1_0029_H04.b : xxtgaGAACACAGGAGGGTTCTGAAGCTTCTGGGTCCTCTCCTCTGAGCTCCGGGCAAGT


20110601C-004724 : CTCTCCTCCGCCAAGACCATGAAGCTCTGCGTGACTGTCCTCTCCCTCCTGGTCCTGGTC
                   ---------+---------+---------+---------+---------+---------+ 119
BMWN1_0032_H06.b : CTCTCCTCCGCCAAGACCATGAAGCTCTGCGTGACTGTCCTCTCCCTCCTGGTCCTGGTC
SPLT1_0029_D11.b : CTCTCCTCCGCCAAGACCATGAAGCTCTGCGTGACTGTCCTCTCCCTCCTGGTCCTGGTC
ILNT1_0054_H06.b : CTCTCCTCCGCCAAGACCATGAAGCTCTGCGTGACTGTCCTCTCCCTCCTGGTCCTGGTC
BMWN1_0029_H04.b : CTCTCCTCCGCCAAGACCATGAAGCTCTGCGTGACTGTCCTCTCCCTCCTGGTCCTGGTC


20110601C-004724 : GCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAATGGGCTCAGACCCCCCCACCTCCTGC
                   ---------+---------+---------+---------+---------+---------+ 179
BMWN1_0032_H06.b : GCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAATGGGCTCAGACCCCCCCACCTCCTGC
SPLT1_0029_D11.b : GCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAATGGGCTCAGACCCTCCCACCTCCTGC
ILNT1_0054_H06.b : GCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAATGGGCTCAGACCCTCCCACCTCCTGC
BMWN1_0029_H04.b : GCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAATGGGCTCAGACCCCCCCACCTCCTGC


20110601C-004724 : TGCTTCACATACACCGTGCGGAAGCTTCCTCGCAACTTCGTGACTGATTACTATGAGACC
                   ---------+---------+---------+---------+---------+---------+ 239
BMWN1_0032_H06.b : TGCTTCACATACACCGTGCGGAAGCTTCCTCGCAACTTCGTGACTGATTACTATGAGACC
SPLT1_0029_D11.b : TGCTTCACATACACCGTGCGGAAGCTTCCTCGCAACTTCGTGACTGATTACTATGAGACC
ILNT1_0054_H06.b : TGCTTCACATACACCGTGCGGAAGCTTCCTCGCAACTTCGTGACTGATTACTATGAGACC
BMWN1_0029_H04.b : TGCTTCACATACACCGTGCGGAAGCTTCCTCGCAACTTCGTGACTGATTACTATGAGACC


20110601C-004724 : AGCAGCCTCTGCTCCCAGCCAGCCGTGGTATTCCAGACCAAAAAGGGCAGGCAGGTCTGC
                   ---------+---------+---------+---------+---------+---------+ 299
BMWN1_0032_H06.b : AGCAGCCTCTGCTCCCAGCCAGCCGTGGTATTCCAGACCAAAAAGGGCAGGCAGGTCTGC
SPLT1_0029_D11.b : AGCAGCCTCTGCTCCCAGCCAGCCGTGGTATTCCAGACCAAAAAGGGCAGGCAGGTCTGC
ILNT1_0054_H06.b : AGCAGCCTCTGCTCCCAGCCAGCCGTGGTATTCCAGACCAAAAAGGGCAGGCAGGTCTGC
BMWN1_0029_H04.b : AGCAGCCTCTGCTCCCAGCCAGCCGTGGTATTCCAGACCAAAAAGGGCAGGCAGGTCTGC


20110601C-004724 : GCCAACCCCAGTGATGACTGGGTCCAGGAGTACATGGATGACCTGGAACTGAACTGAGCT
                   ---------+---------+---------+---------+---------+---------+ 359
BMWN1_0032_H06.b : GCCAACCCCAGTGATGACTGGGTCCAGGAGTACATGGATGACCTGGAACTGAACTGAGCT
SPLT1_0029_D11.b : GCCAACCCCAGTGATGACTGGGTCCAGGAGTACATGGATGACCTGGAACTGAACTGAGCT
ILNT1_0054_H06.b : GCCAACCCCAGTGATGACTGGGTCCAGGAGTACATGGATGACCTGGAACTGAACTGAGCT
BMWN1_0029_H04.b : GCCAACCCCAGTGATGACTGGGTCCAGGAGTACATGGATGACCTGGAACTGAACTGAGCT


20110601C-004724 : GCTCTGAACCCGGGGAAGGTGTCCTCCAGGGAAAGTCACCTGAGCCCGACGCTTCTCAGC
                   ---------+---------+---------+---------+---------+---------+ 419
BMWN1_0032_H06.b : GCTCTGAACCCGGGGAAGGTGTCCTCCAGGGAAAGTCACCTGAGCCCGACGCTTCTCAGC
SPLT1_0029_D11.b : GCTCTGAACCCGGGGAAGGTGTCCTCCAGGGAAAGTCACCTGAGCCCGACGCTTCTCAGC
ILNT1_0054_H06.b : GCTCTGAACCCGGGGAAGGTGTCCTCCAGGGAAAGTCACCTGAGCCCGACGCTTCTCAGC
BMWN1_0029_H04.b : GCTCTGAACCCGGGGAAGGTGTTCTCCAGGGAAAGTCACCTGAGCCCGACGCTTCTCAGC


20110601C-004724 : AAGACGCACCTTCTCGAGACTCCTGACTCCGCTCAGTAGTCGCTATTCCTTTTCCTAACT
                   ---------+---------+---------+---------+---------+---------+ 479
BMWN1_0032_H06.b : AAGACGCACCTTCTCGAGACTCCTGACTCCGCTCAGTAGTCCCTATTCCTTTTCCTAACT
SPLT1_0029_D11.b : AAGACGCACCTTCTCGAGACTCCTGACTCCGCTCAGTAGTCGCTATTCCTTTTCCTAACT
ILNT1_0054_H06.b : AAGACGCACCTTCTCGAGACTCCTGACTCCGCTCAGTAGTCGCTATTCCTTTTCCTAACT
BMWN1_0029_H04.b : AAGACGCACCTTCTCGAGACTCCTGACTCCGCTCAGTAGTCCCTATTCCTTTTCCTAACT


20110601C-004724 : TAATCTGTATTACATGCTGTGTTGCTGTATTTGGTGTTCTTTCCCCTTATTTATGCTTTT
                   ---------+---------+---------+---------+---------+---------+ 539
BMWN1_0032_H06.b : TAATCTGTATTACATGCTGTGTTGCTGTATTTGGTGTTCTTTCCCCTTATTTATGC*TTT
SPLT1_0029_D11.b : TAATCTGTATTACATGCTGTGTTGCTGTATTTGGTGTTCTTTCCCCTTATTTATGCTTTT
ILNT1_0054_H06.b : TAATCTGTATTACATGCTGTGTTGCTGTATTTGGTGTTCTTTCCCCTTATTTATGCTTTT
BMWN1_0029_H04.b : TAATCTGTATTACATGCTGTGTTGCTGTATTTGGTGTTCTTTCCCCTTATTTATGCTTTT


20110601C-004724 : TTTTTTTAACCCAAGGACATTTGTCCCCCATGGGGATGGTCCACCATCACTATTTCTCTG
                   ---------+---------+---------+---------+---------+---------+ 599
BMWN1_0032_H06.b : TTTTTTTAACCCAAGGACATTTGTCCCCCATGGGGATGGTCCACCGTCACTAATTCTCTG
SPLT1_0029_D11.b : TTTTTTTAACCCAAGGACATTTGTCCCCCATGGGGATGGTCCACCATCACTATTTCTCTG
ILNT1_0054_H06.b : TTTTTTTAACCCAAGGACATTTGTCCCCCATGGGGATGGTCCACCATCACTATTTCTCTG
BMWN1_0029_H04.b : TTTTTTTAACCCAAGGACATTTGTCCCCCATGGGGATGGTCCACCATCACTATTTCTCTG


20110601C-004724 : CTATTGTAGATACACGGATAATGCCCTTGATTCCAAGTGTTTTCATAATAAAACCTTTAA
                   ---------+---------+---------+---------+---------+---------+ 659
BMWN1_0032_H06.b : CTtttggtaaataccgggataatgcccttgaattccaattttttccataataaaaccctt
SPLT1_0029_D11.b : CTATTGTAGATACACGGATAATGCCCTTGATTCCAAGTGTTTTCATAATAAAACCTTTtn
ILNT1_0054_H06.b : CTATTGTAGATACACGGATAATGCCCTTGATTCCAAGTGTTTTCATAATAAAACCTTTAA
BMWN1_0029_H04.b : CTATTGTAGATACACGGATAATGCCCTTGATTCCAAGTGTTTTCATAATAAAACCTTTAA


20110601C-004724 : AAATACAAA...................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : taagaattcgagaaaatatccagcccctttatctggccatctaacattataaaaaataca
SPLT1_0029_D11.b : naaattananaaanaaaaanaaaaaanaaaaaaaaaaggttccggcggccgcggaatctt
ILNT1_0054_H06.b : AAAataaaaaa                                                
BMWN1_0029_H04.b : AAATACAAAaa                                                


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : attctataaaatacgtttaatattactatatttccgtaaaacccaccaactcaagtttgt
SPLT1_0029_D11.b : ccttttaggggagggttatttggatccaaaagtgaaaaaaaaaacttgaagaagtttggg
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :                                                             


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : ttattaatagaaatcagaacatcctatctataagatcgtctatattattcaatattatat
SPLT1_0029_D11.b : aaaacccccaactataaggggaggaaaaaaatggctttattgggaaaaattgggagagcc
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :                                                             


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : aatacctttatacatactgatcaaaactctattattatttctaaaaatattaccctaata
SPLT1_0029_D11.b : tatggctttttttggaaccatttaaaacctggaaaaaacaaatttaaaaacaaaaatggg
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :                                                             


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : taataagaacctgttaatgatcttataatgaaaaagtaccatgtgatantatctacactt
SPLT1_0029_D11.b : ttttctttttttttttcggtttcgggggaagttgtggaaagttttctccccaaaaaaaaa
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :                                                             


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : ataaaataaatacataattaaatctcaaaaatccataattactaattaattattactcat
SPLT1_0029_D11.b : ccccccccccccccgggagaaaggcgtttcctttattgggggcttttcccatttccccca
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :                                                             


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : tatatatgcctcactttgtaataggataaaccccatcgtccaaccacaacacttcatacc
SPLT1_0029_D11.b : attaaactctccggctggggttttcggcgcggcgaaggtgtttcctttttctaaaggggg
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :                                                             


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : tactcaagaaaaaactaaatatttttcatagaccatccaatattaagaatattgtaaatt
SPLT1_0029_D11.b : ataaggtttttccaaaaatgggggaaaccccaaaaaaaaattgtaagaaaagctccaagg
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :                                                             


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : attcttccgatacaattatgttaaatataaatagactaaaatatatacgtagaaaagaga
SPLT1_0029_D11.b : ggcaaagccctaaaagggggctttggggggttttttaagtggctctctctgaaggacacc
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :                                                             


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : gttattccaacatacatgaataccctgtaacatattatacatacatcgaacaatacaata
SPLT1_0029_D11.b : aagattgcctagcatgaggggggccacccgcggtgtaaaaaagaggatttcttcgaaaac
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :                                                             


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b : acataatgacgcatcgtatatatcaatagatatatataaatgaaaatcataaaatctaat
SPLT1_0029_D11.b : cctcggggtctgttacaaagcgtctgaaaagtatctcttcttcaaaagaagtgtgattag
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :                                                             


20110601C-004724 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 668
BMWN1_0032_H06.b :                                                            
SPLT1_0029_D11.b : catcgaggtgaatacctatgaggctcccgaagg                          
ILNT1_0054_H06.b :                                                             
BMWN1_0029_H04.b :