[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-004800
Length:
1,145
Sequence:
[FASTA format sequence]
GGTTTTCATT GTGGCGGGTG AGAAGGAGGA TGGGGAAGAG ATGGAGATCG GGGAAGTGGC
CTGTGGCGCT CTGGGTGGAT CCGAGCCCGG CTGCCTGGGG CTCCCAGCGC TGGAGGCGGC
CCAGAGGTTC CGCAGCATCT CCACCTTGGA GCTCTTCACG GTTCCCCTCT CCACAGAGGC
GGCTCTGACG CTGTGCCACC TGCTAAGCTC CTGGGTGTCC CTGGAGAGCC TCACACTTTC
CTATAATGGC CTGGGCTCTA ATATCTTCCG CCTGCTGGAC AGCCTGCGGG CTCTGTCAGG
CCAGGCTGGA TGCCGTCTCC GGGCCCTACA TCTCAGTGAT CTGTTCTCAC CACTGCCCAT
TCTGGAGCTG ACACGTGCCA TTGTGCGAGC CCTGCCCCTG CTACGGGTCC TCTCCATTCG
TGTTGACCAC CCCAGCCAGA GGGACAACCC TGCTGTGCCG GGGAATGCAG GGCCCCCTAG
CCACATAGTT GGGGATGAGG AGATACCAGA AAACTGCCTG GAACAATTGG AGATGGGATT
TCCACGGGGA GCCCAGCCAG CCCCACTGCT CTGCTCTGTA CTGAAGGCCT CAGGTTCTCT
GCAGCAGCTG TCCCTGGACA GCGCCACCTT TGCCTCTCCC CAGGACTTTG GGCTTGTGTT
ACAGACACTC AAAGAGTACA ACCTCGCCCT GAAGAGGCTG AGCTTCCATG ACATGAACCT
GGCTGACTGT CAGAGCGAGG TGCTCTTCTT GCTCCAGAAT TTGACTCTTC AAGAGATTAC
CTTCTCCTTC TGCCGCCTGT TCGAGAAGCG CCCAGCCCAG TTTCTGCCTG AGATGGTTGC
TGCTATGAAG GGCAACTCCA CACTGAAGGG CCTCCGGCTG CCAGGGAACC GCCTGGGAAA
CGCTGGCCTG CTGGCCCTGG CAGATGTTTT CTCAGAAGAC TCATCCTCCT CCCTGTGTCA
GCTGGATATC AGTTCCAACT GCATCAAGCC AGACGGGCTT CTGGAGTTCG CCAAAAAGCT
AGAGCGCTGG GGCCGTGGAG CCTTTGGTCA CCTGCGTCTC TTCCAGAACT GGCTGGGACA
NGATGCAGTC ACAGCCAGGG AAGCCATCCG ACGGCTCCGG GCCACCTGCC ATGTGGTTAG
CGACT
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | LRRC41 | leucine-rich repeat-containing protein 41 [Homo sapiens]. | 630 | 0.0 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| Lrrc41 | leucine-rich repeat-containing protein 41 [Mus musculus]. | 622 | e-178 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC608535 | PREDICTED: similar to MUF1 protein isoform 3 [Canis familiaris]. | 629 | e-180 | |
|
| LOC608535 | PREDICTED: similar to MUF1 protein isoform 1 [Canis familiaris]. | 629 | e-180 | |
|
| LOC608535 | PREDICTED: similar to MUF1 protein isoform 2 [Canis familiaris]. | 123 | 3e-28 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LRRC41 | leucine-rich repeat-containing protein 41 [Bos taurus]. | 624 | e-179 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LRRC41 | PREDICTED: leucine-rich repeat-containing protein 41 [Sus scrofa]. | 640 | 0.0 |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||
20110601C-004800 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
MLN01_0059_E07.b : nnggctaggactatnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0021_C07.b :
TES01_0061_A06.b :
ADR01_0041_B06.b :
20110601C-004800 : ..............GGTTTTCATTGTGGCGGGTGAGAAGGAGGATGGGGAAGAGATGGAG
---------+---------+---------+---------+---------+---------+ 46
MLN01_0059_E07.b : xxxxxxxxxxxxxxGGTTTTCATTGTGGCGGGTGAGAAGGAGGATGGGGAAGAGATGGAG
OVRM1_0021_C07.b :
TES01_0061_A06.b :
ADR01_0041_B06.b :
20110601C-004800 : ATCGGGGAAGTGGCCTGTGGCGCTCTGGGTGGATCCGAGCCCGGCTGCCTGGGGCTCCCA
---------+---------+---------+---------+---------+---------+ 106
MLN01_0059_E07.b : ATCGGGGAAGTGGCCTGTGGCGCTCTGGGTGGATCCGAGCCCGGCTGCCTGGGGCTCCCA
OVRM1_0021_C07.b : xxxxxxxxxxxxxxxx
TES01_0061_A06.b :
ADR01_0041_B06.b :
20110601C-004800 : GCGCTGGAGGCGGCCCAGAGGTTCCGCAGCATCTCCACCTTGGAGCTCTTCACGGTTCCC
---------+---------+---------+---------+---------+---------+ 166
MLN01_0059_E07.b : GCGCTGGAGGCGGCCCAGAGGTTCCGCAGCATCTCCACCTTGGAGCTCTTCACGGTTCCC
OVRM1_0021_C07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTCACGGTTCCC
TES01_0061_A06.b :
ADR01_0041_B06.b :
20110601C-004800 : CTCTCCACAGAGGCGGCTCTGACGCTGTGCCACCTGCTAAGCTCCTGGGTGTCCCTGGAG
---------+---------+---------+---------+---------+---------+ 226
MLN01_0059_E07.b : CTCTCCACAGAGGCGGCTCTGACGCTGTGCCACCTGCTAAGCTCCTGGGTGTCTCTGGAG
OVRM1_0021_C07.b : CTCTCCACAGAGGCGGCTCTGACGCTGTGCCACCTGCTAAGCTCCTGGGTGTCCCTGGAG
TES01_0061_A06.b :
ADR01_0041_B06.b :
20110601C-004800 : AGCCTCACACTTTCCTATAATGGCCTGGGCTCTAATATCTTCCGCCTGCTGGACAGCCTG
---------+---------+---------+---------+---------+---------+ 286
MLN01_0059_E07.b : AGCCTCACACTTTCCTATAATGGCCTGGGCTCTAATATCTTCCGCCTGCTGGACAGCCTG
OVRM1_0021_C07.b : AGCCTCACACTTTCCTATAATGGCCTGGGCTCTAATATCTTCCGCCTGCTGGACAGCCTG
TES01_0061_A06.b : nttttcctacgttgctctggatttccgcctgctggacGCCTG
ADR01_0041_B06.b :
20110601C-004800 : CGGGCTCTGTCAGGCCAGGCTGGATGCCGTCTCCGGGCCCTACATCTCAGTGATCTGTTC
---------+---------+---------+---------+---------+---------+ 346
MLN01_0059_E07.b : CGGGCTCTGTCAGGCCAGGCTGGATGCCGTCTCCGTGCCCTACATCTCAGTGATCTGTTC
OVRM1_0021_C07.b : CGGGCTCTGTCAGGCCAGGCTGGATGCCGTCTCCGGGCCCTACATCTCAGTGATCTGTTC
TES01_0061_A06.b : CGGGCTCTGTCAGGCCAGGCTGGATGCCGTCTCCGGGCCCTACATCTCAGTGATCTGTTC
ADR01_0041_B06.b : nttgaaacaxxxxxxx
20110601C-004800 : TCACCACTGCCCATTCTGGAGCTGACACGTGCCATTGTGCGAGCCCTGCCCCTGCTACGG
---------+---------+---------+---------+---------+---------+ 406
MLN01_0059_E07.b : TCACCACTGCCCATTCTGGAGCTGACACGTGCCATTGTGCGAGCCCTGCCCCTGCTACGG
OVRM1_0021_C07.b : TCACCACTGCCCATTCTGGAGCTGACACGTGCCATTGTGCGAGCCCTGCCCCTGCTACGG
TES01_0061_A06.b : TCACCACTGCCCATTCTGGAGCTGACACGTGCCATTGTGCGAGCCCTGCCCCTGCTACAG
ADR01_0041_B06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGCGAGCCCTGCCCCTGCTACGG
20110601C-004800 : GTCCTCTCCATTCGTGTTGACCACCCCAGCCAGAGGGACAACCCTGCTGTGCCGGGGAAT
---------+---------+---------+---------+---------+---------+ 466
MLN01_0059_E07.b : GTCCTCTCCATTCGTGTTGACCACCCCAGCCAGAGGGACAACCCTGCTGTGCCGGGGAAT
OVRM1_0021_C07.b : GTCCTCTCCATTCGTGTTGACCACCCCAGCCAGAGGGACAACCCTGCTGTGCCGGGGAAT
TES01_0061_A06.b : GTCCTCTCCATTCGTGTTGACCACCCCATCCATAGGGACAACCCTGCTGTGCCGGGGAAT
ADR01_0041_B06.b : GTCCTCTCCATTCGTGTTGACCACCCCAGCCAGAGGGACAACCCTGCTGTGCCGGGGAAT
20110601C-004800 : GCAGGGCCCCCTAGCCACATAGTTGGGGATGAGGAGATACCAGAAAACTGCCTGGAACAA
---------+---------+---------+---------+---------+---------+ 526
MLN01_0059_E07.b : GCAGGGCCCCCTAGCCACATAGTTGGGGATGAGGAGATACCAGAAAACTGCCTGGAACAA
OVRM1_0021_C07.b : GCAGGGCCCCCTAGCCACATAGTTGGGGATGAGGAGATACCAGAAAACTGCCTGGAACAA
TES01_0061_A06.b : GCATGGCCCCCTAGCCACATACTTGGGGATGAGGAGATACCAGAAAACTGCCTGGAACAA
ADR01_0041_B06.b : GCAGGGCCCCCTAGCCACATAGTTGGGGATGAGGAGATACCAGAAAACTGCCTGGAACAA
20110601C-004800 : TTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTCTGCTCTGTACTGAAG
---------+---------+---------+---------+---------+---------+ 586
MLN01_0059_E07.b : TTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTCTGCTCTGTACTGAAG
OVRM1_0021_C07.b : TTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTCTGCTCTGTACTAAAG
TES01_0061_A06.b : TTGGAGATGGGATTTCCACGGGGAGCCCACCCAGCCCCACTGCTCTGCTCTGTACTATAG
ADR01_0041_B06.b : TTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTCTGCTCTGTACTGAAG
20110601C-004800 : GCCTCAGGTTCTCTGCAGCAGCTGTCCCTGGACAGCGCCACCTTTGCCTCTCCCCAGGAC
---------+---------+---------+---------+---------+---------+ 646
MLN01_0059_E07.b : GCCTCAGGTTCTCTGCAGCAGCTGTCCCTGGACAGCGCCACCTTTGCCTCTCCCCAGGAC
OVRM1_0021_C07.b : GCCTCAGGTTCTCTGCAGCAGCTGTCCCTGGACAGCGCCACCTTTGCCTCTCCCCAGGAC
TES01_0061_A06.b : GCCTCTGGTTCTCTGCAGCAGCTGTCCCTGGACAGCGCCACCTTTGCCTCTCCCCACGAC
ADR01_0041_B06.b : GCCTCAGGTTCTCTGCAGCAGCTGTCCCTGGACAGCGCCACCTTTGCCTCTCCCCAGGAC
20110601C-004800 : TTTGGGCTTGTGTTACAGACACTCAAAGAGTACAACCTCGCCCTGAAGAGGCTGAGCTTC
---------+---------+---------+---------+---------+---------+ 706
MLN01_0059_E07.b : TTTGGGCTTGTGTTACAGACACTCAAAGAGTACAACCTCGCCCTGAAGAGGCTGAGCTTC
OVRM1_0021_C07.b : TTTGGGCTTGTGTTACAGACACTCAAAGAGTACAACCTCGCCCTGAAGAGGCTGAGCTTC
TES01_0061_A06.b : TTTGGGCTTGTGTTACAGACACTCATAGAGTACAACCTCACCCTGAAGAGGCTGAGCTTC
ADR01_0041_B06.b : TTTGGGCTTGTGTTACAGACACTCAAAGAGTACAACCTCGCCCTGAAGAGGCTGAGCTTC
20110601C-004800 : CATGACATGAACCTGGCTGACTGTCAGAGCGAGGTGCTCTTCTTGCTCCAGAATTTGACT
---------+---------+---------+---------+---------+---------+ 766
MLN01_0059_E07.b : CATGACATGAACCTGGCTGACTGTCAGAGCGAGGTGCTCTTCTTGCTCCAGAATTTGACT
OVRM1_0021_C07.b : CATGACATGAACCTGGCTGACTGTCAGAGCGAGGTGCTCTTCTTGCTCCAGAATTTGACT
TES01_0061_A06.b : CATGACATGAACCTGGCTGACTGTCAAAGTGAGGTGCTCTTCTTGCACCAGAATTTGACT
ADR01_0041_B06.b : CATGACATGAACCTGGCTGACTGTCAGAGCGAGGTGCTCTTCTTGCTCCAGAATTTGACT
20110601C-004800 : CTTCAAGAGATTACCTTCTCCTTCTGCCGCCTGTTCGAGAAGCGCCCAGCCCAGTTTCTG
---------+---------+---------+---------+---------+---------+ 826
MLN01_0059_E07.b : CTTCAAGAGATTACCTTCTCCTTCTGCCGCCTGTTCGAGAAGCGCCCAGCCCCAGTTCTG
OVRM1_0021_C07.b : CTTCAAGAGATTACCTTCTCCTTCTGCCGCCTGTTCGAGAAGCGCCCAGCCCAGTTTCTG
TES01_0061_A06.b : CTTCTAGAGATTACCTTCTCCTTCTGCCGCCTGTACGAGAAGCGCCCAGCCCATTTTCTG
ADR01_0041_B06.b : CTTCAAGAGATTACCTTCTCCTTCTGCCGCCTGTTCGAGAAGCGCCCAGCCCAGTTTCTG
20110601C-004800 : CCTGAGATGGTTGCTGCTATGAAGGGCAACTCCACACTGAAGGGCCTCCGGCTGCCAGGG
---------+---------+---------+---------+---------+---------+ 886
MLN01_0059_E07.b : CCTGAGATGGTTGCTGCTATgaaagggcactccacactgaaaggccttcggctgccaggg
OVRM1_0021_C07.b : CCTGAGATGGTTGCTGCTATGAAGGGCAAACTCACACTGAAAGGCCTNCGGCTGCCAGGG
TES01_0061_A06.b : CCTGACATGGTTGCTGCTATcaaaggcaactcctcactgcagggcctcctgctgccatgg
ADR01_0041_B06.b : CCTGAGATGGTTGCTGCTATGAAGGGCAACTCCACACTGAAGGGCCTCCGGCTGCCAGGG
20110601C-004800 : AACCGCCTGGGAAACGCTGGCCTGCTGGCCCTGGCAGATGTTTTCTCAGAAGACTCATCC
---------+---------+---------+---------+---------+---------+ 946
MLN01_0059_E07.b : acccgcctgggaaacgctgggccgctggccctggcaaatgttttctcaaaagaccctccc
OVRM1_0021_C07.b : AACCGCCTGGGAAACGCTGGCCTGCTGGCCCTGGCAGATGTCTTCTCAGAAGACTCATCC
TES01_0061_A06.b : atccgcctgtgtaacactggcctgctggcgctgacagatgttttctcatgagactcatcc
ADR01_0041_B06.b : AACCGCCTGGGAAACGCTGGCCTGCTGGCCCTGGCAGATGTTTTCTCAGAAGACTCATCC
20110601C-004800 : TCCTCCCTGTGTCAGCTGGATATCAGTTCCAACTGCATCAAGCCAGACGGGCTTCTGGAG
---------+---------+---------+---------+---------+---------+ 1006
MLN01_0059_E07.b : tcctccctgggtcaactggaattcaatttccactgcttcaagcccaaacgggcttcggga
OVRM1_0021_C07.b : TCCTn
TES01_0061_A06.b : tcctccctgtgtcacctggatatcccttccaactgcttctagccgtacaggcttctggta
ADR01_0041_B06.b : TCCTCCCTGTGTCAGCTGGATATCAGTTCCAACTGCATCAAGCCAGACGGGCTTCTGGAG
20110601C-004800 : TTCGCCAAAAAGCTAGAGCGCTGGGGCCGTGGAGCCTTTGGTCACCTGCGTCTCTTCCAG
---------+---------+---------+---------+---------+---------+ 1066
MLN01_0059_E07.b : attcgcccaaaggcttaaccccctgggcccggggaacccttggttacctgtgcttccttc
OVRM1_0021_C07.b :
TES01_0061_A06.b : ttcctcctacaggctacaacgcttggggcctgggaccctttgaatcactgcatcgtcttc
ADR01_0041_B06.b : TTCGCCAAAAAGCTAGAGCGCTGGGGCCGTGGAGCCTTTGGTCACCTGCGTCTCTTCCAG
20110601C-004800 : AACTGGCTGGGACANGATGCAGTCACAGCCAGGGAAGCCATCCGACGGCTCCGGGCCACC
---------+---------+---------+---------+---------+---------+ 1126
MLN01_0059_E07.b : caaaaactggttggacccggaatgcttccccgcccgggaagccctccaaaggtttccggg
OVRM1_0021_C07.b :
TES01_0061_A06.b : aaaactggctggaccaagatgccgtccccgcccgggaaacatcttagggttccgggcctc
ADR01_0041_B06.b : AACTGGCTGGGACANGATGCAGTCACAGCCAGGGAAGCCATCCGACGGCTCCGGGCCACC
20110601C-004800 : TGCCATGTGGTTAGCGACT.........................................
---------+---------+---------+---------+---------+---------+ 1145
MLN01_0059_E07.b : cccttgccgtgtggttaacgaccctcgggaacccttcccacacctttccaattatgtccc
OVRM1_0021_C07.b :
TES01_0061_A06.b : tggcctgttggtaacggcttcgggggaccctcccctgggttttccaaatttgttggcccc
ADR01_0041_B06.b : TGCCATGTGGTTAGCGACTcgtgggactcatccccagcctttgcagatatgtcagcacca
20110601C-004800 : ............................................................
---------+---------+---------+---------+---------+---------+ 1145
MLN01_0059_E07.b : ccctggtatggggccccccctctcaggcc
OVRM1_0021_C07.b :
TES01_0061_A06.b : ctgtgattggccccagcctccaaagcccagcctttttaccttcactttcaaggggttaag
ADR01_0041_B06.b : tgtgatggggcccacgcctccaagccccaggctcagtaccatcaacttgccagggctgag
20110601C-004800 : ............................................................
---------+---------+---------+---------+---------+---------+ 1145
MLN01_0059_E07.b :
OVRM1_0021_C07.b :
TES01_0061_A06.b : ggataggctggcccaaatccccaaaaaaaaattttgtcctttattttttgcccgggtttt
ADR01_0041_B06.b : gcatgggctgcccaaactcccaaacacaattcggtctcccctttccgccaccgtttttcc
20110601C-004800 : ............................................................
---------+---------+---------+---------+---------+---------+ 1145
MLN01_0059_E07.b :
OVRM1_0021_C07.b :
TES01_0061_A06.b : ttcgctttttcccccctcccccacgccaaggtcccggagggtttttagtggaccccccca
ADR01_0041_B06.b : ctttttccttcctcctcccccctaagcccggaagggttgataaggaaccccccaaaaaaa
20110601C-004800 : ............................................................
---------+---------+---------+---------+---------+---------+ 1145
MLN01_0059_E07.b :
OVRM1_0021_C07.b :
TES01_0061_A06.b : aaaaaggggttttccccacgcggtttaaaaccttgggcccacccccttttcttggaaact
ADR01_0041_B06.b : gccttcccacctggtgtaaagcctttggcccttccaaaacctgggaccttgggccggagt
20110601C-004800 : ............................................................
---------+---------+---------+---------+---------+---------+ 1145
MLN01_0059_E07.b :
OVRM1_0021_C07.b :
TES01_0061_A06.b : ttgggcgccgagaaacgggggcccttttgtgcaagtgtccaccccccgccaggaaattgg
ADR01_0041_B06.b : taagggtcttctgttctgaggaagccccccgggccgggattcggcctcccctccaagggg
20110601C-004800 : ............................................................
---------+---------+---------+---------+---------+---------+ 1145
MLN01_0059_E07.b :
OVRM1_0021_C07.b :
TES01_0061_A06.b : tccccccttttaaagcgggggggtttttatatgggaaaaggcccccaccttctttttttt
ADR01_0041_B06.b : ccaggtttaaaggtggcaaatggccaaacggccccctctgggggccaagggccccgaccc
20110601C-004800 : ............................................................
---------+---------+---------+---------+---------+---------+ 1145
MLN01_0059_E07.b :
OVRM1_0021_C07.b :
TES01_0061_A06.b : gtggggaacagg
ADR01_0041_B06.b : aacccccacattatttcttttttttttaacaaggttttaaaaaaatgtgggaactaaaaa
20110601C-004800 : ............................................................
---------+---------+---------+---------+---------+---------+ 1145
MLN01_0059_E07.b :
OVRM1_0021_C07.b :
TES01_0061_A06.b :
ADR01_0041_B06.b : aaaaggcttgttctgtggggcggctctaaaccggggcctttcatacctttttaaggttaa
20110601C-004800 : ............................................................
---------+---------+---------+---------+---------+---------+ 1145
MLN01_0059_E07.b :
OVRM1_0021_C07.b :
TES01_0061_A06.b :
ADR01_0041_B06.b : ggatttaaagcggcgttttccggtgtgaacttgtttgaattc
TOP
TOP