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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004882

Length: 995

Sequence:  [FASTA format sequence]
TCTCGTCCGC CTACAGCAGG TACTGTGGCG CCTGCCCGCG CCGCCGCACG GAGCCCCTTC
CCGCCGCCTC GCTCCTCCCC AAGATGGCGG CTGCGGCGCT GCTCCGGGGC GCGGCTTCAG
GGCGCAGCGG CCTAGCCTGG CACTGGAGGC TGCGCGCGGC CCCGAGGCGC CGCCTGGCTC
AAGGTTCCTG CTCTCAGAGT GGTGACCCCG CGGGCGGTAC GGCCTGGGCC TACTTCCTGC
TGGGCGAGCG CGCCCTGGTA CGCGTGCGCG GGCCGGACTC GGCGCCCTTT CTCCTGGGTC
TGCTGACCAA TGAGTTGCCG CTTCCGGGTT CCGCTTCGGC CGTGGCGCGC GCGGGCTACG
CCCACTTTCT TAACGTCCAG GGACGCACAC TCTATGACGT CATTCTCTAC GGGCTTCCTG
AGCACTCCGA TGAGCAGCCT ACCTTCCTCC TGGAGTGTGA CAGCTCAGTG CTGGATGCGC
TGCAGAGGCA CCTGGTGCTG CACAGGATCC GGCGGAAAGT CACGGTGGAG CCATGCCCTG
AGCTACGTGT GTGGGCTGTG CTGCCCTGTG CCCCTGAGGA GGCTGGCAGG TCTGTGCCCC
TGCAGGAGAA GGCCCAGTGC ACCACCATCC TCACCCGTGA TCCCCGGACT GCCCGCATGG
GCTGGCGGCT TCTCTCCCAG GATGAGGGCT CTGCCCTGGT GCCCGGGGGC CGACCTGGGG
ACCTCCAGGA TTATCACCGA CACCGGTACC AGCAAGGTGT TCCCGAAGGG GTCCACGACC
TGCCCCCAGG AGTGGCCCTA CCTCTGGAGT CCAACCTGGC CTTCATGAAT GGCATCAGCT
TCACCAAGGG TTGCTACATT GGCCAGGAAC TGACGGCCCG CACCCACCAT ACAGGTGTCA
TCCGAAAACG CCTCTTCCCA GTACAGCTCT CAGGCCGCCT CCCTGTGGGC AGCATTGCTC
CTGGCACCTC TGTGCTCACT GAGTCCGGGC AGGCA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		IBA57	putative transferase CAF17, mitochondrial precursor [Homo sapiens].	369	e-102	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		A230051G13Rik	putative transferase CAF17 homolog, mitochondrial precursor [Mus musculus].	360	e-100	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC482207	PREDICTED: similar to CG8043-PA [Canis familiaris].	314	9e-86	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		IBA57	IBA57, iron-sulfur cluster assembly homolog [Bos taurus].	436	e-122	O
		LOC506009	PREDICTED: hypothetical protein [Bos taurus].	436	e-122	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100513524	PREDICTED: putative transferase CAF17 homolog, mitochondrial-like [Sus scrofa].	523	e-149	O

Alignment:      TOP

20110601C-004882 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
PTG01_0008_E01.b :                     ttattttgactxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TES01_0047_C05.b :                                                             
SPL01_0071_B06.b : nnggctaggacttagacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PST01_0093_F08.b :                                                            n


20110601C-004882 : .................TCTCGTCCGCCTACAGCAGGTACTGTGGCGCCTGCCCGCGCCG
                   ---------+---------+---------+---------+---------+---------+ 43
PTG01_0008_E01.b : xxxxxxxxxxxxxxxxxTCTCGTCCGCCTACAGCAGGTACTGTGGCGCCTGCCCGCGCCG
TES01_0047_C05.b :             cactggaTCGTCCGCCTACAGCAAGTACTGTGGCGCCTGCCCGCGCCG
SPL01_0071_B06.b : xxxxxxxxxxxxxxxxxxxTCGTCCGCCTACAGCAGGTACTGTGGCGCCTGCCCGCGCCG
PST01_0093_F08.b : nnncctacggtggctatggactcgtcgcctacGCAGGTACTGTGGCGCCTGCCCGCGCCG


20110601C-004882 : CCGCACGGAGCCCCTTCCCGCCGCCTCGCTCCTCCCCAAGATGGCGGCTGCGGCGCTGCT
                   ---------+---------+---------+---------+---------+---------+ 103
PTG01_0008_E01.b : CCGCACGGAGCCCCTTCCCGCCGCCTCGCTCCTCCCCAAGATGGCGGCTGCGGCGCTGCT
TES01_0047_C05.b : CCGCACCGAGCCCCTTCCCGCCGCCTCGCTCCTCCCCAAGATGGCGGCTGCGGCGCTGCT
SPL01_0071_B06.b : CCGCACGGAGCCCCTTCCCGCCGCCTCGCTCCTCCCCAAGATGGCGGCTGCGGCGCTGCT
PST01_0093_F08.b : CCGCACGGAGCCCCTTCCCGCCGCCTCGCTCCTCCCCAAGATGGCGGCTGCGGCGCTGCT


20110601C-004882 : CCGGGGCGCGGCTTCAGGGCGCAGCGGCCTAGCCTGGCACTGGAGGCTGCGCGCGGCCCC
                   ---------+---------+---------+---------+---------+---------+ 163
PTG01_0008_E01.b : CCGGGGCGCGGCTTCAGGGCGCAGCGGCCTAGCCTGGCACTGGAGGCTGCGCGCGGCCCC
TES01_0047_C05.b : CCGGGGCGCGGCTTCAGGGCGCAGCGGCCTAGCCTGGCACTGGAGGCTGCGCGCGGCCCC
SPL01_0071_B06.b : CCGGGGCGCGGCTTCAGGGCGCAGCGGCCTAGCCTGGCACTGGAGGCTGCGCGCGGCCCC
PST01_0093_F08.b : CCGGGGCGCGGCTTCAGGGCGCAGCGGCCTAGCCTGGCACTGGAGGCTGCGCGCGGCCCT


20110601C-004882 : GAGGCGCCGCCTGGCTCAAGGTTCCTGCTCTCAGAGTGGTGACCCCGCGGGCGGTACGGC
                   ---------+---------+---------+---------+---------+---------+ 223
PTG01_0008_E01.b : GAGGCGCCGCCTGGCTCAAGGTTCCTGCTCTCAGAGTGGTGACCCCGCGGGCGGTACGGC
TES01_0047_C05.b : TAGGCGCCGCCTGGCTCAAGGTTCCTGCTCTCAGAGTGGTGACCCCGCGGGCGGTACGGC
SPL01_0071_B06.b : GAGGCGCCGCCTGGCTCAAGGTTCCTGCTCTCAGAGTGGTGACCCCGCGGGCGGTACGGC
PST01_0093_F08.b : GAGGCGCCGCCTGGCTCAAGGTTCCTGCTCTCAGAGTGGTGACCCCGCGGGCGGTACGGC


20110601C-004882 : CTGGGCCTACTTCCTGCTGGGCGAGCGCGCCCTGGTACGCGTGCGCGGGCCGGACTCGGC
                   ---------+---------+---------+---------+---------+---------+ 283
PTG01_0008_E01.b : CTGGGCCTACTTCCTGCTGGGCGAGCGCGCCCTGGTACGCGTGCGCGGGCCGGACTCGGC
TES01_0047_C05.b : CTGGGCCTACTTCCTGCTGGGCGAGCGCGCCCTGGTACGCGTGCGCGGGCCGGACTCGGC
SPL01_0071_B06.b : CTGGGCCTACTTCCTGCTGGGCGAGCGCGCCCTGGTACGCGTGCGCGGGCCGGACTCGGC
PST01_0093_F08.b : CTGGGCCTACTTCCTGCTGGGCGAGCGCGCCCTGGTACGCGTGCGCGGGCCGGACTCGGC


20110601C-004882 : GCCCTTTCTCCTGGGTCTGCTGACCAATGAGTTGCCGCTTCCGGGTTCCGCTTCGGCCGT
                   ---------+---------+---------+---------+---------+---------+ 343
PTG01_0008_E01.b : GCCCTTTCTCCTGGGTCTGCTGACCAATGAGTTGCCGCTTCCGGGTTCCGCTTCGGCCGT
TES01_0047_C05.b : GCCCTTTCTCCTGGGTCTGCTGACCAATGAGTTGCCGCTTCCGGGTCCCGCTTCGGCCGT
SPL01_0071_B06.b : GCCCTTTCTCCTGGGTCTGCTGACCAATGAGTTGCCGCTTCCGGGTCCCGCTTCGGCCGT
PST01_0093_F08.b : GCCCTTTCTCCTGGGTCTGCTGACCAATGAGTTGCCGCTTCCGGGTTCCGCTTCGGCCGT


20110601C-004882 : GGCGCGCGCGGGCTACGCCCACTTTCTTAACGTCCAGGGACGCACACTCTATGACGTCAT
                   ---------+---------+---------+---------+---------+---------+ 403
PTG01_0008_E01.b : GGCGCGCGCGGGCTACGCCCACTTTCTTAACGTCCAGGGACGCACACTCTATGACGTCAT
TES01_0047_C05.b : GGCGCGCGCGGGCTACGCCCACTTTCTTAACGTCCAGGGACGCACACTCTATGACGTCAT
SPL01_0071_B06.b : GGCGCGCGCGGGCTACGCCCACTTTCTTAACGTCCAGGGACGCACACTCTATGACGTCAT
PST01_0093_F08.b : GGCGCGCGCGGGCTACGCCCACTTTCTTAACGTCCAGGGACGCACACTCTATGACGTCAT


20110601C-004882 : TCTCTACGGGCTTCCTGAGCACTCCGATGAGCAGCCTACCTTCCTCCTGGAGTGTGACAG
                   ---------+---------+---------+---------+---------+---------+ 463
PTG01_0008_E01.b : TCTCTACGGGCTTCCTGAGCACTCCGATGAGCAGCCTACCTTCCTCCTGGAGTGTGACAG
TES01_0047_C05.b : TCTCTACGGGCTTCCTGAGCACTCCGATGAGCAGCCTACCTTCCTCCTGGAGTGTGACAG
SPL01_0071_B06.b : TCTCTACGGGCTTCCTGAGCACTCCGATGAGCAGCCTACCTTCCTCCTGGAGTGTGACAG
PST01_0093_F08.b : TCTCTACGGGCTTCCTGAGCACTCCGATGAGCAGCCTACCTTCCTCCTGGAGTGTGACAG


20110601C-004882 : CTCAGTGCTGGATGCGCTGCAGAGGCACCTGGTGCTGCACAGGATCCGGCGGAAAGTCAC
                   ---------+---------+---------+---------+---------+---------+ 523
PTG01_0008_E01.b : CTCAGTGCTGGATGCGCTGCAGAGGCACCTGGTGCTGCACAGGATCCGGCGGAAAGTCAC
TES01_0047_C05.b : CTCAGTGCTGGATGCGCTGCAGAGGCACCTGGTGCTGCACAGGATCCGGCGGAAAGTCAC
SPL01_0071_B06.b : CTCAGTGCTGGATGCGCTGCAGAGGCACCTGGTGCTGCACAGGATCCGGCGGAAAGTCAC
PST01_0093_F08.b : CTCAGTGCTGGATGCGCTGCAGAGGCACCTGGTGCTGCACAGGATCCGGCGGAAAGTCAC


20110601C-004882 : GGTGGAGCCATGCCCTGAGCTACGTGTGTGGGCTGTGCTGCCCTGTGCCCCTGAGGAGGC
                   ---------+---------+---------+---------+---------+---------+ 583
PTG01_0008_E01.b : GGTGGAGCCATGCCCTGAGCTACGTGTGTGGGCTGTGCTGCCCTGTGCCCCTGAGGAGGC
TES01_0047_C05.b : GGTGGAGCCATGCCCTGAGCTACGTGTGTGGGCTGTGCTGCCCTGTGCCCCTGAGGAGGC
SPL01_0071_B06.b : GGTGGAGCCATGCCCTGAGCTACGTGTGTGGGCTGTGCTGCCCTGTGCCCCTGAGGAGGC
PST01_0093_F08.b : GGTGGAGCCATGCCCTGAGCTACGTGTGTGGGCTGTGCTGCCCTGTGCCCCTGAGGAGGC


20110601C-004882 : TGGCAGGTCTGTGCCCC*TGCAGGAGAAGGCCCAGTGCACCACCATCCTCACCCGTGATC
                   ---------+---------+---------+---------+---------+---------+ 642
PTG01_0008_E01.b : TGGCACGTCTGTGCCCCCTGCAGGATAAAGCCCAGTGCACCACCATCCTCACCCGTGATC
TES01_0047_C05.b : TGGCAGGTCTGTGCCCC*TGCAGGAGAAGGCCCAGTGCACCACCATCCTCACCCGTGATC
SPL01_0071_B06.b : TGGCAGGTCTGTGCCCC*TGCAGGAGAAGGCCCAGTGCACCACCATCCTCACCCGTGATC
PST01_0093_F08.b : TGGCAGGTCTGTGCCCC*TGCAGGAGAAGGCCCAGTGCACCACCATCCTCACCCGTGATC


20110601C-004882 : CCCGGACTGCCCGCATGGGCTGGCGGCTTCTCTCCCAGGATGAGGGCTC*TGCCCTGGTG
                   ---------+---------+---------+---------+---------+---------+ 701
PTG01_0008_E01.b : CCCGGAATGCCCGCATGGGCTGGCGGCTTCTCTCCCATGATGAGGGCTCCTGCCTGGGTG
TES01_0047_C05.b : CCCGGACTGCCCGCATGGGCTGGCGGCTTCTCTCCCAGGATGAGGGCTC*TGCCCTGGTG
SPL01_0071_B06.b : CCCGGACTGCCCGCATGGGCTGGCGGCTTCTCTCCCAGGATGAGGGC*CCTGCCCTGGTG
PST01_0093_F08.b : CCCGGACTGCCCGCATGGGCTGGCGGCTTCTCTCCCAGGATGAGGGCTC*TGCCCTGGTG


20110601C-004882 : CCCGGGGGCCGACCTGGGGACCTCCAGGATTATCACCGACACCGGTACCAGCAAGGTGTT
                   ---------+---------+---------+---------+---------+---------+ 761
PTG01_0008_E01.b : CCCGGGGGCCGACTTGGGGACCTCCAGGATTATCACCCACACCGGTAACAGAAAGGtgtt
TES01_0047_C05.b : CCCCGGGGACGACCTGGGGACCTCCAGGAATATCACCGACACCGGTACCAGCAAGGGGGT
SPL01_0071_B06.b : CCCGGGGGCCGACCTGGGGACCTCCAGGATTATCACCGACACCGGTACCAGCAAGGTGTT
PST01_0093_F08.b : CCCGGGGGCCGACCTGGGGACCTCCAGGATTATCACCGACACCGGTACCAGCAAGGTGTT


20110601C-004882 : CCCGAAGGGGTCCACGACCTGCCCCCAGGAGTGGCCCTACCTCTGGAGTCCAACCTGGCC
                   ---------+---------+---------+---------+---------+---------+ 821
PTG01_0008_E01.b : ccctaagggttccaggaccgggccccatgtaatggccctacctcgggaatctaacctgtg
TES01_0047_C05.b : CCCGAAAGGGTCCACCACCTGCCCCCcagaatgggccctacctctgggagtccaaactgg
SPL01_0071_B06.b : CCCGAAGGGGTCCACGACCTGCCCCCCAGAGTGGCCCTACCTCTGGAGTCCAACCTGGCC
PST01_0093_F08.b : CCCGAAGGGGTCCACGACCTGCCCCCAGGAGTGGCCCTACCTCTGGAGTCCAACCTGGCC


20110601C-004882 : TTCATGAATGGCATCAGCTTCACCAAGGGTTGCTACATTGGCCAGGAACTGACGGCCCGC
                   ---------+---------+---------+---------+---------+---------+ 881
PTG01_0008_E01.b : ccttcatgaatgggaacaaccttcccaaggggtggcatcattggccaaaaattgctgggc
TES01_0047_C05.b : cctctcatgaatgggcatcagcttccccaaagggttgctacttgggccaggaatggacgg
SPL01_0071_B06.b : TTCATGAATGGCATCAGCTTC*CCCAGGGTTGCTACATTGGCCAGGAACTGACGGCCCGC
PST01_0093_F08.b : TTCATGAATGGCATCAGCTTCACCAAGGGTTGCTACATTGGCCAGGAACTGACGGCCCGC


20110601C-004882 : ACCCACCATACAGGTGTCATCCGAAAACGCCTCTTCCCAGTACAGCTCTCAGGCCGCCTC
                   ---------+---------+---------+---------+---------+---------+ 941
PTG01_0008_E01.b : ccccaccaccaatacagggttcttccaaaaaggcctcttcccgaaaagctctaaggccgc
TES01_0047_C05.b : gcccgcccccaccttacaggtggtctccgaaaaacgcttcttcccagtacaactcttcag
SPL01_0071_B06.b : ACCCCACCTAACAGGGTCATCCGAAAACGCCctcttccccataacagctcttaagcccgc
PST01_0093_F08.b : ACCCACCATACAGGTGTCATCCGAAAACGCCTCTTCCCAGTACAGCTCTCAGGCCGCCTC


20110601C-004882 : CCTGTGGGCAGCATTGCTCCTGGCACCTCTGTGCTCACTGAGTCCGGGCAGGCA......
                   ---------+---------+---------+---------+---------+---------+ 995
PTG01_0008_E01.b : cttcttttggggtaaacttgccccggaccttctgggcttatagaaactcggagagcgact
TES01_0047_C05.b : ggccccctccctgtgggacacattgcctcccggccactccgttgctccctggaatccggg
SPL01_0071_B06.b : ctccctggggggcaagcattgctcccgggcacctcggtggccccctgagtcccgggca 
PST01_0093_F08.b : CCTGTGGGCAGCATTGCTCCTGGCACCTCTGTGCTCACTGAGTCCGGGCAGGCAgctggc


20110601C-004882 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 995
PTG01_0008_E01.b : tggacagaaaagggcagccctgtgggatattggttctgcctcttttcggaaactggaaaa
TES01_0047_C05.b : gcaggaacctggccaatataagggaaggcccttgggaaaatgggggattggccttttttc
SPL01_0071_B06.b :                                                             
PST01_0093_F08.b : aagtatagggcaggccctggggaatgtgggctggctctgttgcgaactgaaaaatcaagg


20110601C-004882 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 995
PTG01_0008_E01.b : aataagggctcctttccaataaaaacttctgtgaaagttccggttacttcaattgtgctt
TES01_0047_C05.b : cgaaacttaaaaatataaggggccccccccccctcaaaacacctataaaaaggggccggg
SPL01_0071_B06.b :                                                             
PST01_0093_F08.b : ntcctctcacatcagaactctgaaaatggctggtacctctactgcttctgtgcaaattgg


20110601C-004882 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 995
PTG01_0008_E01.b : ctgtcttaaaatgtgggcccacacccgacaaaactcttagtgggtcacttaatcataaca
TES01_0047_C05.b : taaccctttaaatgctttcttgtgcccaaacgtgggggaccctcaacacccacaaagacc
SPL01_0071_B06.b :                                                             
PST01_0093_F08.b : tggccacaccccaagtaccctagggttctgcactctgcaaggccctgtcatgtgacctcg


20110601C-004882 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 995
PTG01_0008_E01.b : aggtctctaccaccggctcctcttaatcgcgcaccccatccaggagttccgcttttatac
TES01_0047_C05.b : cccttgggagttccttgtatccctctgaaggagaggcctttga                
SPL01_0071_B06.b :                                                             
PST01_0093_F08.b : aaacggcctccatcccagggaccctttaaaaaacttttggaaggccaggatatggctccc


20110601C-004882 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 995
PTG01_0008_E01.b : aacctttgtggggccccacctttgattgtccctcattgtttgtcggagggtcatcttaca
TES01_0047_C05.b :                                                             
SPL01_0071_B06.b :                                                             
PST01_0093_F08.b : ggctttgctgggggcaactctaacccggttttcccctttttcctagaggttaaagggaac


20110601C-004882 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 995
PTG01_0008_E01.b : cctacgtttcttcaatacgtgctcgaaaggaattatgacgaatcacccacttgttgttgt
TES01_0047_C05.b :                                                             
SPL01_0071_B06.b :                                                             
PST01_0093_F08.b : ccccctgagcttgggaacttggcccctctccaacggaaatcaaaaagtgtgggttcttcc


20110601C-004882 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 995
PTG01_0008_E01.b : tggaatattggc                                               
TES01_0047_C05.b :                                                             
SPL01_0071_B06.b :                                                             
PST01_0093_F08.b : acaagagaaaagccgcgccccccggccttgggggaaaatctcaggaaaaggtgatatttt


20110601C-004882 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 995
PTG01_0008_E01.b :                                                             
TES01_0047_C05.b :                                                             
SPL01_0071_B06.b :                                                             
PST01_0093_F08.b : tg