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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004931

Length: 1,016

Sequence:  [FASTA format sequence]
GCTTTGCGCA TGCGCGCTCC TGCCGCACGG GCCTGAGTGG TGGGTGTCGC TCTCCAGCTT
CAGCCGTCTC TGCCGCAGCC CCATCTCTTC GTCCAGGGCG CTCCTTCGCA GAGCTGAGAA
TGTTCTCGGA ACTCAGTAAC CTTCTCAACA CCAGTCCTGA CAAGGTGGAG CAGGGGAAAC
TGACTCTACT CTGTGATGTC AAGACTGATG GCAGTTTCCT TGTGCATCAC TTTCTCTCCT
TCTACCTCAA AGCTCATTGT AAAGTCTGCT TTGTGGCACT CACTCAGTCC TTCAGTCACT
ACAATATCGT GGGACAGAAG CTGGGGGTCA GTCTGACCAT AGCACGGGAA CGCGGGCAGC
TTGTGTTTCT TGAGGGCCTC AAGTCTGCCA TGGACATCTT CTTCCGGCCT CAGGAGGAGC
CACACCCGCT GCAGTTCCTC AGGGAGGCCA GTGCTGGGAA CCTGCAGCCG CTGTATGAGT
TTGTGCAGGA TGCCCTGAAG CCCGTGGCCA ATGGGGAGGC GGCATGGAGG TGCCCCGTGC
TGCTGGTGGA CGACCTCAGT GTGCTGCTGA GCCTGGGTGT CGGGGCAGTG GCGGTGCTGG
ACTTCATCCA CTACTGCAGA GCCACTGTGT GCTGGGAATG GAAGGGAAAC ATAGTGGCCC
TTGTGCATGA CAGTGGAGAC ACTGAGGACG AGGAGAATGA CATCCTGCTG AATGGCCTTA
GTCACCAGAG CCACCTGATC CTTCGGGCTG AGGGTCTGGC CACCGGCTTC TGCAAGGATG
TGCATGGGCA GCTGAGTGTC CTGTGGAGGA GGCCCCTGCA GCCCACATCC CAGCGGGATC
AGAGCCTCAC TTACCAGTAC AAGATACAGG ACAAGAACGT GTCCTTTTTT TGCCAAAGGA
ATGTCTCCTG CTGTCCTGTG ACCTGATTTA GGGGCAGCTG AAGTTACTTT GGGTTGTTTT
TGGATGCAAA GATAAAGCAA CTGAGCAGAA ATGGATCTTT ACACTTTTGC AGTGGA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		C3orf75	transmembrane protein 103 [Homo sapiens].	408	e-114	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		2610002I17Rik	transmembrane protein 103 [Mus musculus].	379	e-105	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC609199	PREDICTED: hypothetical protein XP_846414 [Canis familiaris].	338	4e-93

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		C22H3orf75	transmembrane protein 103 [Bos taurus].	423	e-118	O
		TMEM103	PREDICTED: transmembrane protein 103 [Bos taurus].	423	e-118	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		C3orf75	PREDICTED: UPF0405 protein C3orf75 homolog [Sus scrofa].	481	e-136	O
		LOC100625857	PREDICTED: UPF0405 protein C3orf75 homolog [Sus scrofa].	343	1e-94	O

Alignment:      TOP

20110601C-004931 : ........................................................GCTT
                   ---------+---------+---------+---------+---------+---------+ 4
ADR01_0096_D05.b : nnnnnggataaacagctggaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTT
HTMT1_0130_E01.b :                             tttccgacggtagaggccgtaxxxxxxxxxxx
SMG01_0029_A09.b :                               nnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
THY01_0074_H01.b :                                gcxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-004931 : TGCGCATGCGCGCTCCTGCCGCACGGGCCTGAGTGGTGGGTGTCGCTCTCCAGCTTCAGC
                   ---------+---------+---------+---------+---------+---------+ 64
ADR01_0096_D05.b : TGCGCATGCGCGCTCCTGCCGCACGGGCCTGAGTGGTGGGTGTCGCTCTCCAGCTTCAGC
HTMT1_0130_E01.b : xxxxxxxxxxxxxxxxxxxxxxxxxGGCCTGAGTGGTGGGTGTCGCTCTCCAGCTTCAGC
SMG01_0029_A09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnxxxxxxxxGTCGCTCTCCAGCTTCAGC
THY01_0074_H01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGC


20110601C-004931 : CGTCTCTGCCGCAGCCCCATCTCTTCGTCCAGGGCGCTCCTTCGCAGAGCTGAGAATGTT
                   ---------+---------+---------+---------+---------+---------+ 124
ADR01_0096_D05.b : CGTCTCTGCCGCAGCCCCATCTCTTCGTCCAGGGCGCTCCTTCGCAGAGCTGAGAATGTT
HTMT1_0130_E01.b : CGTCTCTGCCGCAGCCCCATCTCTTCGTCCAGGGCGCTCCTTCGCAGAGCTGAGAATGTT
SMG01_0029_A09.b : CGTCTCTGCCGCAGCCCCATCTCTTCGTCCAGGGCGCTCCTTCGCAGAGCTGAGAATGTT
THY01_0074_H01.b : CGTCTCTGCCGCAGCCCCATCTCTTCGTCCAGGGCGCTCCTTCGCAGAGCTGAGAATGTT


20110601C-004931 : CTCGGAACTCAGTAACCTTCTCAACACCAGTCCTGACAAGGTGGAGCAGGGGAAACTGAC
                   ---------+---------+---------+---------+---------+---------+ 184
ADR01_0096_D05.b : CTCGGAACTCAGTAACCTTCTCAACACCAGTCCTGACAAGGTGGAGCAGGGGAAACTGAC
HTMT1_0130_E01.b : CTCGGAACTCAGTAACCTTCTCAACACCAGTCCTGACAAGGTGGAGCAGGGGAAACTGAC
SMG01_0029_A09.b : CTCGGAACTCAGTAACCTTCTCAACACCAGTCCTGACAAGGTGGAGCAGGGGAAACTGAC
THY01_0074_H01.b : CTCGGAACTCAGTAACCTTCTCAACACCAGTCCTGACAAGGTGGAGCAGGGGAAACTGAC


20110601C-004931 : TCTACTCTGTGATGTCAAGACTGATGGCAGTTTCCTTGTGCATCACTTTCTCTCCTTCTA
                   ---------+---------+---------+---------+---------+---------+ 244
ADR01_0096_D05.b : TCTACTCTGTGATGTCAAGACTGATGGCAGTTTCCTTGTGCATCACTTTCTCTCCTTCTA
HTMT1_0130_E01.b : TCTACTCTGTGATGTCAAGACTGATGGCAGTTTCCTTGTGCATCACTTTCTCTCCTTCTA
SMG01_0029_A09.b : TCTACTCTGTGATGTCAAGACTGATGGCAGTTTCCTTGTGCATCACTTTCTCTCCTTCTA
THY01_0074_H01.b : TCTACTCTGTGATGTCAAGACTGATGGCAGTTTCCTTGTGCATCACTTTCTCTCCTTCTA


20110601C-004931 : CCTCAAAGCTCATTGTAAAGTCTGCTTTGTGGCACTCACTCAGTCCTTCAGTCACTACAA
                   ---------+---------+---------+---------+---------+---------+ 304
ADR01_0096_D05.b : CCTCAAAGCTCATTGTAAAGTCTGCTTTGTGGCACTCACTCAGTCCTTCAGTCACTACAA
HTMT1_0130_E01.b : CCTCAAAGCTCATTGTAAAGTCTGCTTTGTGGCACTCACTCAGTCCTTCAGTCACTACAA
SMG01_0029_A09.b : CCTCAAAGCTCATTGTAAAGTCTGCTTTGTGGCACTCACTCAGTCCTTCAGTCACTACAA
THY01_0074_H01.b : CCTCAAAGCTCATTGTAAAGTCTGCTTTGTGGCACTCACTCAGTCCTTCAGTCACTACAA


20110601C-004931 : TATCGTGGGACAGAAGCTGGGGGTCAGTCTGACCATAGCACGGGAACGCGGGCAGCTTGT
                   ---------+---------+---------+---------+---------+---------+ 364
ADR01_0096_D05.b : TATCGTGGGACAGAAGCTGGGGGTCAGTCTGACCATAGCACGGGAACGCGGGCAGCTTGT
HTMT1_0130_E01.b : TATCGTGGGACAGAAGCTGGGGGTCAGTCTGACCATAGCACGGGAACGCGGGCAGCTTGT
SMG01_0029_A09.b : TATCGTGGGACAGAAGCTGGGGGTCAGTCTGACCATAGCACGGGAACGCGGGCAGCTTGT
THY01_0074_H01.b : TATCGTGGGACAGAAGCTGGGGGTCAGTCTGACCATAGCACGGGAACGCGGGCAGCTTGT


20110601C-004931 : GTTTCTTGAGGGCCTCAAGTCTGCCATGGACATCTTCTTCCGGCCTCAGGAGGAGCCACA
                   ---------+---------+---------+---------+---------+---------+ 424
ADR01_0096_D05.b : GTTTCTTGAGGGCCTCAAGTCTGCCATGGACATCTTCTTCCGGCCTCAGGAGGAGCCACA
HTMT1_0130_E01.b : GTTTCTTGAGGGCCTCAAGTCTGCCATGGACATCTTCTTCCGGCCTCAGGAGGAGCCACA
SMG01_0029_A09.b : GTTTCTTGAGGGCCTCAAGTCTGCCATGGACATCTTCTTCCGGCCTCAGGAGGAGCCACA
THY01_0074_H01.b : GTTTCTTGAGGGCCTCAAGTCTGCCATGGACATCTTCTTCCGGCCTCAGGAGGAGCCACA


20110601C-004931 : CCCGCTGCAGTTCCTCAGGGAGGCCAGTGCTGGGAACCTGCAGCCGCTGTATGAGTTTGT
                   ---------+---------+---------+---------+---------+---------+ 484
ADR01_0096_D05.b : CCCGCTGCAGTTCCTCAGGGAGGCCAGTGCTGGGAACCTGCAGCCGCTGTATGAGTTTGT
HTMT1_0130_E01.b : CCCGCTGCAGTTCCTCAGGGAGGCCAGTGCTGGGAACCTGCAGCCGCTGTATGAGTTTGT
SMG01_0029_A09.b : CCCGCTGCAGTTCCTCAGGGAGGCCAGTGCTGGGAACCTGCAGCCGCTGTATGAGTTTGT
THY01_0074_H01.b : CCCGCTGCAGTTCCTCAGGGAGGCCAGTGCTGGGAACCTGCAGCCGCTGTATGAGTTTGT


20110601C-004931 : GCAGGATGCCCTGAAGCCCGTGGCCAATGGGGAGGCGGCATGGAGGTGCCCCGTGCTGCT
                   ---------+---------+---------+---------+---------+---------+ 544
ADR01_0096_D05.b : GCAGGATGCCCTGAAGCCCGTGGCCAATGGGGAGGCGGCATGGAGGTGCCCCGTGCTGCT
HTMT1_0130_E01.b : GCAGGATGCCCTGAAGCCCGTGGCCAATGGGGAGGCGGCATGGAGGTGCCCCGTGCTGCT
SMG01_0029_A09.b : GCAGGATGCCCTGAAGCCCGTGGCCAATGGGGAGGCTGCATGGAGGTGCCCCGTGCTGCT
THY01_0074_H01.b : GCAGGATGCCCTGAAGCCCGTGGCCAATGGGGAGGCTGCATGGAGGTGCCCCGTGCTGCT


20110601C-004931 : GGTGGACGACCTCAGTGTGCTGCTGAGCCTGGGTGTCGGGGCAGTGGCGGTGCTGGACTT
                   ---------+---------+---------+---------+---------+---------+ 604
ADR01_0096_D05.b : GGTGGACGACCTCAGTGTGCTGCTGAGCCTGGGTGTCGGGGCAGTGGCGGTGCTGGACTT
HTMT1_0130_E01.b : GGTGGACGACCTCAGTGTGCTGCTGAGCCTGGGTGTCGGGGCAGTGGCGGTGCTGGACTT
SMG01_0029_A09.b : GGTGGACGACCTCAGTGTGCTGCTGAGCCTGGGTGTCGGGGCAGTGGCGGTGCTGGACTT
THY01_0074_H01.b : GGTGGACGACCTCAGTGTGCTGCTGAGCCTGGGTGTCGGGGCAGTGGCGGTGCTGGACTT


20110601C-004931 : CATCCACTACTGCAGAGCCACTGTGTGCTGGGAATGGAAGGGAAACATAGTGGCCCTTGT
                   ---------+---------+---------+---------+---------+---------+ 664
ADR01_0096_D05.b : CATCCACTACTGCAGAGCCACTGTGTGCTGGGAATGGAAGGGAAACATAGTGGCCCTTGT
HTMT1_0130_E01.b : CATCCACTACTGCAGAGCCACTGTGTGCTGGGAATGGAAGGGAAACATAGTGGCCCTTGT
SMG01_0029_A09.b : CATCCACTACTGCAGAGCCACTGTGTGCTGGGAATGGAAGGGAAACATAGTGGCCCTTGT
THY01_0074_H01.b : CATCCACTACTGCAGAGCCACTGTGTGCTGGGAATGGAAGGGAAACATAGTGGCCCTTGT


20110601C-004931 : GCATGACAGTGGAGACACTGAGGACGAGGAGAATGACATCCTGCTGAATGGCCTTAGTCA
                   ---------+---------+---------+---------+---------+---------+ 724
ADR01_0096_D05.b : GCATGACAGTGGAGACACTGAGGACGAGGAGAATGACATCCTGCTGAATGGCCTTAGTCA
HTMT1_0130_E01.b : GCATGACAGTGGAGACACTGAGGACGAGGAGAATGACATCCTGCTGAATGGCCTTAGTCA
SMG01_0029_A09.b : GCATGACAGTGGAGACACTGAGGACGAGGAGAATGACATCCTGCTGAATGGCCTTAGTCA
THY01_0074_H01.b : GCATGACAGTGGAGACACTGAGGACGAGGAGAATGACATCCTGCTGAATGGCCTTAGTCA


20110601C-004931 : CCAGAGCCACCTGATCCTTCGGGCTGAGGGTCTGGCCACCGGCTTCTGCAAGGATGTGCA
                   ---------+---------+---------+---------+---------+---------+ 784
ADR01_0096_D05.b : CCAGAGCCACCTGATCCTTCGGGCTGAGGGTCTGGCCACCGGCTTCTGCAAGGATGTGCA
HTMT1_0130_E01.b : CCAGAGCCACCTGATCCTTCGGGCTGAGGGTCTGGCCACCGGCTTCTGCAAGGATGTGCA
SMG01_0029_A09.b : CCAGAGCCACCTGATCCTTTCGGCTGAGGGTCTGGCCACCGGCTTCTGCAAGGATGTGCA
THY01_0074_H01.b : CCAGAGCCACCTGATCCTTCGGGCTGAGGGTCTGGCCACCGGCTTCTGCAAGGATGTGCA


20110601C-004931 : TGGGCAGCTGAGTGTCCTGTGGAGGAGGCCCCTGCAGCCCACATCCCAGCGGGATCAGAG
                   ---------+---------+---------+---------+---------+---------+ 844
ADR01_0096_D05.b : TGGGCAGCTGAGTGTCCTGTGGAGGAGACCCCTGCAGCCCACATCCCAGCGGGATCAGAG
HTMT1_0130_E01.b : TGGGCAGCTGAGTGTCCTGTGGAGGAGACCCCTGCAGCCCACATCCCAGCGGGATCAGAG
SMG01_0029_A09.b : TGGGCAGCTGAGTGTCCTGTGGGAGAGACCCCTGCAGCCCACATCCCAGCGGGATCAGAG
THY01_0074_H01.b : TGGGCAGCTGAGTGTCCTGTGGAGGAGGCCCCTGCAGCCCACATCCCAGCGGGATCAGAG


20110601C-004931 : CCTCACTTACCAGTACAAGATACAGGACAAGAACGTGTCCTTTTTTTGCCAAAGGAATGT
                   ---------+---------+---------+---------+---------+---------+ 904
ADR01_0096_D05.b : CCTCACTTACCCAGTACAGATACAGGGACAGAACGTGTCC*TTTTTTTGCCAAGGAATGT
HTMT1_0130_E01.b : CCTCACTTACCAGTACAAGATACAGGACAAGAACGTGTCC*TTTTTTGCCNAAGGAATGT
SMG01_0029_A09.b : CCTCACTTACCAGTACAAGATACAGGACCAGAACGTGTCC*TTTTTTGCAAAAGGAATGT
THY01_0074_H01.b : CCTCACTTACCAGTACAAGATACAGGACAAGAACGTGTCCTTTTTTTGCCAAAGGAATGT


20110601C-004931 : CTCCTGCTGTCCTGTGACCTGATTTAGGGGCAGCTGAAGTTACTTTGGGTTGTTTTTGGA
                   ---------+---------+---------+---------+---------+---------+ 964
ADR01_0096_D05.b : CTCCTGCTGTCCTGTGACCTGATTTTAGGGCAGCTGAAGTTACCTTGGGTTTGTTTTGGA
HTMT1_0130_E01.b : CTCCTGCTGTCCTGTGACCTGATTTAGGGGCAGCTGAAGTTACTTTGGGTTGTTTTTGGA
SMG01_0029_A09.b : CTCCTGCTGTCCTGTGACCTGATTAAGGGGCAACTGAAGTTACTTGGGGTTGTTTTTGGA
THY01_0074_H01.b : CTCCTGCTGTCCTGTGACCTGATTTAGGGGCAGCTGAAGTTACCTCGGGTTTGTTTTGGA


20110601C-004931 : TGCAAAGATAAAGCAACTGAGCAGAAATGGATCTTTACACTTTTGCAGTGGA........
                   ---------+---------+---------+---------+---------+---------+ 1016
ADR01_0096_D05.b : TGCAAAGATAAAGCAACTGAGCAGAAATGGATCTTTACACTTTTGCAGTGGActgccagc
HTMT1_0130_E01.b : TGCAAAGATAAAGCCACTGAGCAGAAATGGATcttttcacctttgcagtgaactgccaac
SMG01_0029_A09.b : tgcaaagataaagcaactgagcagaaattggatctttcaccttttgcaatggacgggcaa
THY01_0074_H01.b : TGCAAAGATAAAGCAACTGAGCAGAAATGGATCTTn                       


20110601C-004931 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1016
ADR01_0096_D05.b : accactgtgacccagggatggntgaaccgtgctgtgatggtttgcctttggtcttgtggg
HTMT1_0130_E01.b : acactgtgacccaggnatggtggaacggtgctgggagggttgccttttgttccgtgggcc
SMG01_0029_A09.b : ccccactggtgaccaaggaaggtggaacggggccggaagggttgcctttgttcctggggc
THY01_0074_H01.b :                                                             


20110601C-004931 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1016
ADR01_0096_D05.b : ccccgtataaaaaatccatgaagaatctgcagtccaccctcactgaaaaaaatcttcatg
HTMT1_0130_E01.b : ccggtaaaaaaaatcacggaggatcggcgttcacccccacctaaaaaaatcccctggtaa
SMG01_0029_A09.b : ccggttaaaaaatccttgaggattcggcgcccaccttacttaaaaaaaagccccggttaa
THY01_0074_H01.b :                                                             


20110601C-004931 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1016
ADR01_0096_D05.b : ttaactgggggaaggggaatcttgggggccctccttaaaaaacctttcgccccactgccc
HTMT1_0130_E01.b : actggggaaaaggatccctggtgcctcccttaaatcccttcccccccnnnaaaaaaattt
SMG01_0029_A09.b : acggggaaagaatccttgggcccctccttaaaaaccttccccccccaaaaaaaaaaaaaa
THY01_0074_H01.b :                                                             


20110601C-004931 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1016
ADR01_0096_D05.b : aaaaaaaaaaaaaaggccactgggcctcaagtggggtgccggccccttaaaatttcccga
HTMT1_0130_E01.b : ttttataanagaaataattgtttaatatattaaaaagtcccggcccgatccccttggggg
SMG01_0029_A09.b : aaagaaaaannnannannnnaaaaaaaaaanggggccttgtttcaatgggtggggcccct
THY01_0074_H01.b :                                                             


20110601C-004931 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1016
ADR01_0096_D05.b : gggccaagatatccgacaccctttttgtaaagagggccctaagggggcatataagcgggc
HTMT1_0130_E01.b : ttttggtccaagagaaaaacttggtgttgacacccacagagcggaaaacctttggaattg
SMG01_0029_A09.b : ttaatatcctcgggcgcaattaaacccccccttttttaaaggggcccaagggagtattaa
THY01_0074_H01.b :                                                             


20110601C-004931 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1016
ADR01_0096_D05.b : gggcgcggtttaaccggggg                                       
HTMT1_0130_E01.b : ggctgtttttaaacaacgccaaatataaactctctttttttgcgggggggggtttttata
SMG01_0029_A09.b : aaagagggggccttttacaccggagggaaaaacttgtgtttttgaaaactttctggggga
THY01_0074_H01.b :                                                             


20110601C-004931 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1016
ADR01_0096_D05.b :                                                             
HTMT1_0130_E01.b : tacccccgaggggtttgcgtctctctcaagccgcgtggggggctcgggttttnnaaaaaa
SMG01_0029_A09.b : aaaagaaaaaacaaaat                                          
THY01_0074_H01.b :                                                             


20110601C-004931 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1016
ADR01_0096_D05.b :                                                             
HTMT1_0130_E01.b : aaaaaagaggtttttaagaattataatctctttggtgtcgcatgccnnnnnn       
SMG01_0029_A09.b :                                                             
THY01_0074_H01.b :