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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-006978

Length: 1,172

Sequence:  [FASTA format sequence]
TTGGCCTACT GGAGAGTGCT CTGCATGGCC TGGTCTTAGG TGCTTGGTGC GGTGAGGAGC
CCAGTGTGCA CTGAGGCAGC CATGGGTCTG CTGACTGGGG ATTTACTGGG GATCCTGGCC
TTGGCCATGG TCATCTTCCT GCTCCTGGTG GACTTGATGC ACCGGCGCTC ACGCTGGGCT
CCACGCTACC CACCGGGCCC CATGCCACTG CCTGGGCTGG GTAACCTGCT ACAAGTGAAC
TTCCAAGACC CACGTCTCAG CTTTATCCAG CTGCGGCGCC GCTTTGGGGA TGTATTCAGC
CTGCAGCAGA TCTGGAGGCC CGTGGTCGTG CTCAATGGGC TGGCGGCTGT GCGGGAGGCG
CTGGTGTCCC ACAGCCATGA AACCTCCGAC CGCCCACCTG TGTTCATCTT AGAGCACCTG
GGTTACGGGC CGCGCTCCGA AGGAGTGATC CTGGCGCGCT ACGGGAAAGC GTGGCGCGAG
CAGCGGCGCT TCTCGGTGTC CACCTTGCGC AACTTTGGCC TGGGCAAGAA GTCGTTGGAG
GAGTGGGTGA CCCAAGAGGC CTCGTGCCTT TGTGCCGCCT TCGCCGACCA GGCTGGACGC
CCCTTTAGCC CTAACAACCT TCTGAATAAA GCGGTGAGCA ACGTGATCGC CTCCCTCACC
TTCGCGCGCC GCTTCGAGTA CAACGACCCT CGCATGCTCA AGCTTCTGGA CCTAGTGTTG
GAAGGACTGA AGGAGGAAGT GGGCCTCATG CGCCAGGTGC TGGAAGCAAT GCCGGTTCTC
AGGCATATCC CGGGGCTGTG TGCCAAGCTC TTCCCAAGGC AGAAGGCCTT CTTGGTCATG
ATAGATGAGC TGATCACAGA GCACAAGATG ACCCGGGACC TGGCCCAGCC CCCCCGAGAC
TTGACGGATG CCTTCCTGGA CGAAATGAAA GAGGCCAAGG GGAAACCCCC GAGAGCAGCT
TCAATGATGA GAACCTCCGC CTGGTGGTGG CTGACCTGTT CTCCGCTGGG ATGATCACCA
CCTCGACCAC GCTGGCCTGG GCTCTCCTCC TCATGATCCT GCACCCAGAC GTGCAGCGAC
GCGTCCAACA GGAAAATCAA TGAGGTGATA GGGCACGTGC GGCAACCGGA AAAAAGGATC
AGGCCCTCAT GCCCTTCACC TTGGCCGTGC TC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CYP2D6	cytochrome P450 2D6 isoform 1 [Homo sapiens].	347	e-111	O
		CYP2D6	cytochrome P450 2D6 isoform 2 [Homo sapiens].	235	5e-78	O
		CYP2J2	cytochrome P450 2J2 [Homo sapiens].	140	1e-38	O
		CYP2S1	cytochrome P450 2S1 [Homo sapiens].	120	2e-30	O
		CYP2F1	cytochrome P450 2F1 [Homo sapiens].	119	5e-30	O
		CYP2C8	cytochrome P450 2C8 isoform a [Homo sapiens].	117	2e-31	O
		CYP2U1	cytochrome P450 2U1 [Homo sapiens].	115	2e-32
		CYP2C19	cytochrome P450 2C19 [Homo sapiens].	114	6e-30	O
		CYP2C8	cytochrome P450 2C8 isoform b [Homo sapiens].	107	1e-28	O
		CYP2C8	cytochrome P450 2C8 isoform b [Homo sapiens].	107	1e-28	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Cyp2d22	cytochrome P450, family 2, subfamily d, polypeptide 22 [Mus musculus].	303	4e-98	O
		Cyp2d22	cytochrome P450, family 2, subfamily d, polypeptide 22 [Mus musculus].	303	4e-98	O
		Cyp2d26	cytochrome P450 2D26 [Mus musculus].	295	4e-80	O
		Cyp2d9	cytochrome P450 2D9 [Mus musculus].	278	6e-89	O
		Cyp2d10	cytochrome P450 2D10 [Mus musculus].	277	1e-88	O
		Cyp2d34	cytochrome P450, family 2, subfamily d, polypeptide 34 [Mus musculus].	277	3e-89	O
		Cyp2d12	cytochrome P450, family 2, subfamily d, polypeptide 12 [Mus musculus].	273	8e-88	O
		Cyp2d11	cytochrome P450 2D11 [Mus musculus].	268	2e-87	O
		Cyp2j6	cytochrome P450 2J6 [Mus musculus].	147	3e-41	O
		Cyp2j9	cytochrome P450, family 2, subfamily j, polypeptide 9 [Mus musculus].	144	2e-34	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		CYP2D15	cytochrome P450 2D15 [Canis lupus familiaris].	337	e-105	O
		LOC610195	PREDICTED: similar to cytochrome P450, family 2, subfamily J, polypeptide 2 [Canis familiaris].	142	3e-37	O
		LOC476453	PREDICTED: similar to cytochrome P450 monooxygenase CYP2T1 [Canis familiaris].	127	2e-29	O
		LOC612477	PREDICTED: similar to cytochrome P450, family 2, subfamily F, polypeptide 1 [Canis familiaris].	123	3e-28
		CYP2B6	cytochrome P450 2B11 [Canis lupus familiaris].	120	2e-27	O
		CYPIIB11	PREDICTED: cytochrome P450 2B11 [Canis familiaris].	120	2e-27	O
		LOC484491	PREDICTED: similar to cytochrome P450, family 2, subfamily S, polypeptide 1 [Canis familiaris].	117	9e-32	O
		LOC610105	PREDICTED: similar to cytochrome P450, family 2, subfamily K, polypeptide 6 [Canis familiaris].	114	3e-29
		CYP2C19	cytochrome P450 2C21 [Canis lupus familiaris].	111	1e-29	O
		CYP2C41	cytochrome P450 2C41 [Canis lupus familiaris].	106	6e-28	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		MGC127055	hypothetical protein LOC785824 [Bos taurus].	384	e-107	O
		CYP2D14	cytochrome P450 2D14 [Bos taurus].	382	e-124	O
		LOC530929	PREDICTED: cytochrome P450, family 2, subfamily J-like [Bos taurus].	143	7e-39	O
		LOC530929	PREDICTED: cytochrome P450, family 2, subfamily J-like [Bos taurus].	143	7e-39	O
		LOC510406	PREDICTED: cytochrome P450, family 2, subfamily J, polypeptide 2-like [Bos taurus].	143	2e-38	O
		LOC510406	PREDICTED: cytochrome P450, family 2, subfamily J, polypeptide 2-like [Bos taurus].	143	2e-38	O
		LOC511936	PREDICTED: similar to cytochrome P450 isoform 2J [Bos taurus].	137	2e-36	O
		CYP2J2	cytochrome P450, family 2, subfamily J, polypeptide 2 [Bos taurus].	129	3e-35	O
		LOC511936	PREDICTED: similar to cytochrome P450 isoform 2J isoform 1, partial [Bos taurus].	129	3e-34	O
		CYP2C18	cytochrome P450, family 2, subfamily C, polypeptide 18 [Bos taurus].	124	3e-32	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100622269	PREDICTED: vitamin D(3) 25-hydroxylase-like isoform 1 [Sus scrofa].	482	e-136	O
		CYP2D25	vitamin D(3) 25-hydroxylase [Sus scrofa].	482	e-136	O
		LOC100622269	PREDICTED: vitamin D(3) 25-hydroxylase-like isoform 2 [Sus scrofa].	356	2e-98	O
		LOC100621407	PREDICTED: cytochrome P450 2J2-like, partial [Sus scrofa].	135	7e-36	O
		LOC100524940	PREDICTED: cytochrome P450 2J2-like, partial [Sus scrofa].	132	1e-35	O
		LOC100525112	PREDICTED: cytochrome P450 2J2-like [Sus scrofa].	127	2e-29	O
		CYP2C32	PREDICTED: LOW QUALITY PROTEIN: cytochrome P450 2C18 [Sus scrofa].	125	8e-34	O
		CYP2C49	cytochrome P450 2C49 [Sus scrofa].	124	3e-33	O
		CYP2C33	cytochrome P450 2C33 [Sus scrofa].	115	5e-30	O
		LOC100518620	PREDICTED: cytochrome P450 2U1-like [Sus scrofa].	109	2e-30