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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-007025

Length: 1,216

Sequence:  [FASTA format sequence]
CTCGACCCCG ACGCCGCTGC CGCCGCAGGC CCCTCCACGC CCACACCCCC TACCCACTGC
CCAGCCATGG AGGCCATCAA GAAGAAGATG CAGATGCTGA AGCTGGACAA GGAGAACGCC
ATCGACCGGG CCGAGCAGGC GGAGTCGGAT AAGAAAGCTG CTGAGGAGAA GTGCAAGCAG
GTGGAGGAGG AGCTGACGCA CCTCCAGAAG AAGCTGAAGG GGACAGAGGA TGAGCTGGAC
AAATACTCCG AGAACCTGAA GGACGCGCAG GAAAAGCTGG AGCTGAGCGA GAAGAAAGCC
TCCGACGCCG AAGGGGATGT AGCAGCTCTC AATCGGCGCA TCCAACTCGT TGAGGAGGAG
TTGGACAGGG CTCAGGAACG ACTGGCCACA GCCCTGCAGA AGCTTGAGGA GGCAGAAAAG
GCTGCAGATG AGAGCGAGAG AGGAATGAAG GTGATAGAAA ACCGGGCCAT GAAAGATGAG
GAGAAGATGG AGATTCAGGA GATGCAGCTC AAAGAGGCCA AGCACATTGC CGAGGAGGCC
GACCGCAAAT ACGAGGAGGT AGCTCGTAAG TTGGTCATCC TGGAGGGCGA GCTGGAGAGG
GCAGAGGAGC GTGCCGAGGT GTCTGAACTA AAATGTGGTG ACCTGGAAGA AGAACTCAAG
AATGTCACCA ACAACCTGAA GTCGCTAGAG GCTGCATCTG AAAAGTATTC TGAAAAGGAG
GATAAATATG AAGAAGAGAT TAAACTTCTG TCTGACAAAC TGAAAGAGGC TGAGACCCGT
GCTGAATTTG CAGAGAGAAC AGTTGCAAAA CTGGAAAAGA CCATCGATGA CCTGGAAGAA
AAACTTGTCC AGGCCAAAGA AAAGAACGTG GGCTTTACTC AAACACTGGA TCCGACACTA
AACGACCTAA ACTGTATATA ACCAAACCAA AAAAATCTCG TTCCCTCCAA AACTTCCCAA
GCTACGTTGT TTTTCCCCTT CTCTTGTAAG AAAGTTTTCT TTTGTTTTTT GCCCCCTTTG
CTTTTGCCTG AAAAAGGGCA AGGCAAAATT TATAAATACC CGTGAACCCA ATATTTTTTT
TGTTATCAAA AAAAAACTTT TTTAAACCCC CCAAGTTTAA AAATTCTTTT TTTCCTTTTC
CCTTTTTTTT TTTTCCAAGG GTGGGCCCCC CCCCCCCCTT TTTTTTTTCT CCCACCCCTT
CTTTTTTTTT TTTTTT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain isoform 1 [Homo sapiens].	367	e-101	O
		TPM1	tropomyosin alpha-1 chain isoform 3 [Homo sapiens].	311	1e-84	O
		TPM3	tropomyosin alpha-3 chain isoform 1 [Homo sapiens].	301	6e-82	O
		TPM1	tropomyosin alpha-1 chain isoform 1 [Homo sapiens].	301	6e-82	O
		TPM2	tropomyosin beta chain isoform 1 [Homo sapiens].	300	2e-81	O
		TPM2	tropomyosin beta chain isoform 2 [Homo sapiens].	293	2e-79	O
		TPM1	tropomyosin alpha-1 chain isoform 4 [Homo sapiens].	292	4e-79	O
		TPM1	tropomyosin alpha-1 chain isoform 5 [Homo sapiens].	282	5e-76	O
		TPM1	tropomyosin alpha-1 chain isoform 2 [Homo sapiens].	268	6e-72	O
		TPM1	tropomyosin alpha-1 chain isoform 7 [Homo sapiens].	250	2e-66	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tpm1	tropomyosin alpha-1 chain isoform 3 [Mus musculus].	311	9e-85	O
		Tpm2	tropomyosin beta chain [Mus musculus].	301	7e-82	O
		Tpm1	tropomyosin alpha-1 chain isoform 1 [Mus musculus].	301	5e-82	O
		Tpm1	tropomyosin alpha-1 chain isoform 9 [Mus musculus].	297	1e-80	O
		Tpm1	tropomyosin alpha-1 chain isoform 4 [Mus musculus].	292	3e-79	O
		Tpm3	tropomyosin alpha-3 chain [Mus musculus].	286	2e-77	O
		Tpm1	tropomyosin alpha-1 chain isoform 5 [Mus musculus].	283	2e-76	O
		Tpm1	tropomyosin alpha-1 chain isoform 2 [Mus musculus].	268	5e-72	O
		Tpm4	tropomyosin alpha-4 chain [Mus musculus].	221	9e-58	O
		Tpm1	tropomyosin alpha-1 chain isoform 6 [Mus musculus].	194	2e-49	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC609879	PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis familiaris].	371	e-103	O
		LOC609879	PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis familiaris].	350	2e-96	O
		LOC609879	PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis familiaris].	344	1e-94	O
		LOC481598	PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15 [Canis familiaris].	313	2e-85	O
		TPM1	PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis familiaris].	311	6e-85	O
		LOC480137	PREDICTED: similar to tropomyosin 3, gamma isoform 20 [Canis familiaris].	304	1e-82	O
		TPM1	PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 6 [Canis familiaris].	302	4e-82	O
		LOC481598	PREDICTED: similar to Tropomyosin beta chain (Tropomyosin 2) (Beta-tropomyosin) isoform 3 [Canis familiaris].	301	8e-82	O
		LOC480137	PREDICTED: similar to Tropomyosin alpha 3 chain (Tropomyosin 3) (Tropomyosin gamma) (hTM5) isoform 4 [Canis familiaris].	301	6e-82	O
		TPM1	PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 26 [Canis familiaris].	301	8e-82	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain [Bos taurus].	368	e-102	O
		TPM3	tropomyosin alpha-3 chain [Bos taurus].	301	6e-82	O
		TPM1	tropomyosin alpha-1 chain [Bos taurus].	299	3e-81	O
		TPM2	tropomyosin beta chain [Bos taurus].	282	4e-76	O
		LOC788816	PREDICTED: tropomyosin 2, beta-like [Bos taurus].	174	1e-43	O
		TPM3	PREDICTED: tropomyosin 4-like [Bos taurus].	170	3e-42	O
		TPM3	PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].	170	3e-42	O
		LOC783188	PREDICTED: tropomyosin 4-like [Bos taurus].	152	6e-37	O
		LOC783188	PREDICTED: tropomyosin 4 [Bos taurus].	152	6e-37	O
		LOC784223	PREDICTED: tropomyosin 4 [Bos taurus].	152	6e-37	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100620599	PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].	300	8e-82	O
		TPM1	tropomyosin alpha-1 chain [Sus scrofa].	295	3e-80	O
		TPM2	tropomyosin beta chain [Sus scrofa].	288	4e-78	O
		LOC100620599	PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].	284	6e-77	O
		TPM4	tropomyosin alpha-4 chain [Sus scrofa].	231	5e-61	O
		TPM3	tropomyosin alpha-3 chain [Sus scrofa].	171	8e-43	O

Alignment:      TOP

20110601C-007025 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0200_C05.b :                            gagttgtcatxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0094_A06.b :                            tagttgtcxxxxxxxxxxxxxxxxxxxxxxxxx
UTR01_0062_E04.b : gccttttatgggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-007025 : ............................CTCGACCCCGACGCCGCTGCCGCCGCAGGCCC
                   ---------+---------+---------+---------+---------+---------+ 32
OVRM1_0200_C05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACCCCGACGCCGCTGCCGCCGCAGGCCC
OVRM1_0094_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACACCGACGCCGCTGCCGCCGCAGGCCC
UTR01_0062_E04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACCCCGACGCCGCTGCCGCCGCAGGCCC


20110601C-007025 : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
                   ---------+---------+---------+---------+---------+---------+ 92
OVRM1_0200_C05.b : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
OVRM1_0094_A06.b : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
UTR01_0062_E04.b : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA


20110601C-007025 : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
                   ---------+---------+---------+---------+---------+---------+ 152
OVRM1_0200_C05.b : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
OVRM1_0094_A06.b : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
UTR01_0062_E04.b : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA


20110601C-007025 : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
                   ---------+---------+---------+---------+---------+---------+ 212
OVRM1_0200_C05.b : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
OVRM1_0094_A06.b : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
UTR01_0062_E04.b : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA


20110601C-007025 : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
                   ---------+---------+---------+---------+---------+---------+ 272
OVRM1_0200_C05.b : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
OVRM1_0094_A06.b : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
UTR01_0062_E04.b : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA


20110601C-007025 : AAAGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
                   ---------+---------+---------+---------+---------+---------+ 332
OVRM1_0200_C05.b : AAAGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
OVRM1_0094_A06.b : AAAGCTGGAGTTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
UTR01_0062_E04.b : AAAGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA


20110601C-007025 : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
                   ---------+---------+---------+---------+---------+---------+ 392
OVRM1_0200_C05.b : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
OVRM1_0094_A06.b : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
UTR01_0062_E04.b : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC


20110601C-007025 : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
                   ---------+---------+---------+---------+---------+---------+ 452
OVRM1_0200_C05.b : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
OVRM1_0094_A06.b : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
UTR01_0062_E04.b : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT


20110601C-007025 : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAA
                   ---------+---------+---------+---------+---------+---------+ 512
OVRM1_0200_C05.b : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAA
OVRM1_0094_A06.b : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCGGGAGATGCAGCTCAA
UTR01_0062_E04.b : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAA


20110601C-007025 : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
                   ---------+---------+---------+---------+---------+---------+ 572
OVRM1_0200_C05.b : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
OVRM1_0094_A06.b : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
UTR01_0062_E04.b : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT


20110601C-007025 : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
                   ---------+---------+---------+---------+---------+---------+ 632
OVRM1_0200_C05.b : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
OVRM1_0094_A06.b : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
UTR01_0062_E04.b : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA


20110601C-007025 : ATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
                   ---------+---------+---------+---------+---------+---------+ 692
OVRM1_0200_C05.b : ATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
OVRM1_0094_A06.b : ATGTGGTGACCTGGAAGAAGAACTCTAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
UTR01_0062_E04.b : ATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC


20110601C-007025 : TGCATCTGAAAAGTATTCTGAAAAGGAGGATAAATATGAAGAAGAGATTAAACTTCTGTC
                   ---------+---------+---------+---------+---------+---------+ 752
OVRM1_0200_C05.b : TGNCATCTGAAAGTATTCTGAAAAGGAGGATAAATATGAn                   
OVRM1_0094_A06.b : TGCATCTCGAAAGTATTCTGAAAAGGAGGATAAATACGAAGAAGAGATTCAACTTCTGTC
UTR01_0062_E04.b : TGCATCTGAAAAGTATTCTGAAAAGGAGGATAAATATGAAGAAGAGATTAAACTTCTGTC


20110601C-007025 : TGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACAGTTGCAAAACT
                   ---------+---------+---------+---------+---------+---------+ 812
OVRM1_0200_C05.b :                                                             
OVRM1_0094_A06.b : TGACAAACTGAAAGAGGCT                                        
UTR01_0062_E04.b : TGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACAGTTGCAAAACT


20110601C-007025 : GGAAAAGACCATCGATGACCTGGAAGAAAAACTTGTCCAGGCCAAAGAAAAGAACGTGGG
                   ---------+---------+---------+---------+---------+---------+ 872
OVRM1_0200_C05.b :                                                             
OVRM1_0094_A06.b :                                                             
UTR01_0062_E04.b : GGAAAAGACCATCGATGACCTGGAAGAAAAACTTGTCCAGGCCAAAGAAAAGAACGTGGG


20110601C-007025 : CTTTACTCAAACACTGGATCCGACACTAAACGACCTAAACTGTATATAACCAAACCAAAA
                   ---------+---------+---------+---------+---------+---------+ 932
OVRM1_0200_C05.b :                                                             
OVRM1_0094_A06.b :                                                             
UTR01_0062_E04.b : CTTTACTCAAACACTGGATCCGACACTAAACGACCTAAACTGTATATAACCAAACCAAAA


20110601C-007025 : AAATCTCGTTCCCTCCAAAACTTCCCAAGCTACGTTGTTTTTCCCCTTCTCTTGTAAGAA
                   ---------+---------+---------+---------+---------+---------+ 992
OVRM1_0200_C05.b :                                                             
OVRM1_0094_A06.b :                                                             
UTR01_0062_E04.b : AAATCTCGTTCCCTCCAAAACTTCCCAAGCTACGTTGTTTTTCCCCTTCTCTTGTAAGAA


20110601C-007025 : AGTTTTCTTTTGTTTTTTGCCCCCTTTGCTTTTGCCTGAAAAAGGGCAAGGCAAAATTTA
                   ---------+---------+---------+---------+---------+---------+ 1052
OVRM1_0200_C05.b :                                                             
OVRM1_0094_A06.b :                                                             
UTR01_0062_E04.b : AGTTTTCTTTTGTTTTTTGCCCCCTTTGCTTTTGCCTGAAAAAGGGCAAGGCAAAATTTA


20110601C-007025 : TAAATACCCGTGAACCCAATATTTTTTTTGTTATCAAAAAAAAACTTTTTTAAACCCCCC
                   ---------+---------+---------+---------+---------+---------+ 1112
OVRM1_0200_C05.b :                                                             
OVRM1_0094_A06.b :                                                             
UTR01_0062_E04.b : TAAATACCCGTGAACCCAATATTTTTTTTGTTATCAAAAAAAAACTTTTTTAAACCCCCC


20110601C-007025 : AAGTTTAAAAATTCTTTTTTTCCTTTTCCCTTTTTTTTTTTTCCAAGGGTGGGCCCCCCC
                   ---------+---------+---------+---------+---------+---------+ 1172
OVRM1_0200_C05.b :                                                             
OVRM1_0094_A06.b :                                                             
UTR01_0062_E04.b : AAGTTTAAAAATTCTTTTTTTCCTTTTCCCTTTTTTTTTTTTCCAAGGGTGGGCCCCCCC


20110601C-007025 : CCCCCCTTTTTTTTTTCTCCCACCCCTTCTTTTTTTTTTTTTTT................
                   ---------+---------+---------+---------+---------+---------+ 1216
OVRM1_0200_C05.b :                                                             
OVRM1_0094_A06.b :                                                             
UTR01_0062_E04.b : CCCCCCTTTTTTTTTTCTCCCACCCCTTCTTTTTTTTTTTTTTT