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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-007204

Length: 1,357

Sequence:  [FASTA format sequence]
TACTGCAGTG AAAGCCGAGG CAGCGGGCAG GCGAGCAGGG GGCGGGCGGA CATCTTGGGA
TCCGGAGAGT GGCCGGCCCG GCAGAGCAGG CGGCCTCGGA CACCAGGTCT GTTCTCAGAG
CGATGGGCTG CCAGGACTGA GCTGCCGCCA TGATTGGAGG CTTATTCATC TATAATCACA
AGGGGGAGGT GCTCATCTCC CGGGTCTACC GAGATGACAT CGGGAGGAAC GCAGTGGACG
CCTTTCGGGT CAATGTTATC CACGCCCGGC AGCAGGTGCG CAGCCCCGTC ACCAACATCG
CTCGCACCAG TTTCTTCCAT GTTAAGCGGT CCAACATCTG GCTGGCAGCT GTCACCAAGC
AGAATGTCAA TGCTGCCATG GTCTTCGAAT TCCTCTATAA GATGTGTGAC GTAATGGCTG
CCTACTTTGG GAAGATCAGC GAAGAGAACA TCAAGAACAA TTTTGTGCTC ATATATGAGT
TGCTTGATGA GATCCTGGAC TTTGGCTACC CGCAGAACTC AGAGACGGGC GCGCTAAAAA
CCTTCATCAC CCAGCAGGGC ATCAAAAGCC AGACGAAAGA AGAGCAGTCC CAAATCACCA
GCCAGGTGAC AGGGCAGATT GGCTGGCGGC GGGAAGGCAT CAAGTATCGC CGAAACGAGC
TCTTCCTGGA TGTGCTGGAG AGTGTGAACC TCCTCATGTC CCCACAGGGG CAGGTGCTGA
GCGCCCATGT GTCCGGCCGA GTGGTGATGA AGAGCTACCT GAGTGGCATG CCTGAGTGCA
AGTTTGGGAT GAATGACAAG ATTGTCATTG AGAAGCAGGG CAAAGGCACA GCCGATGAAA
CAAGCAAGAG CGGGAAGCAA TCAATTGCCA TTGATGACTG CACCTTCCAC CAGTGTGTTC
GACTCAGCAA GTTTGACTCT GAACGCAGCA TCAGCTTCAT CCCACCAGAT GGAGAATTTG
AGCTCATGAG GTATCGCACC ACCAAGGACA TCATCCTTCC CTTCCGAGTG ATCCCGCTAG
TTCGGGAAGT GGGGCGCACC AAGCTGGAGG TCAAGGTGGT CATTAAGTCC AACTTCAAGC
CCTCACTACT GGCTCAGAAG ATTGAGGTGA GGATCCCAAC CCCACTGAAC ACCAGCGGGG
TGCAGGTGAT CTGCATGAAG GGGAAGGCTA AGTACAAGGC CAGCGAGAAC GCCATCGTGT
GGAAGATCAA GCGCATGGCA GGCATGAAGG AATCACAGAT CAGCGCTGAG ATTGAGCTTC
TGCCCACCAA TGACAAGAAG AAATGGGCTC GACCCCCCAT TTCGATGACC TTTGAGGTGC
CATTCGCGCC TTCTGGCCTC AAGGTGCGCT ACTTGAA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		AP2M1	AP-2 complex subunit mu isoform b [Homo sapiens].	793	0.0	O
		AP2M1	AP-2 complex subunit mu isoform a [Homo sapiens].	788	0.0	O
		AP1M2	AP-1 complex subunit mu-2 [Homo sapiens].	314	1e-85	O
		AP1M1	AP-1 complex subunit mu-1 isoform 2 [Homo sapiens].	311	7e-85	O
		AP1M1	AP-1 complex subunit mu-1 isoform 1 [Homo sapiens].	303	3e-82	O
		AP4M1	AP-4 complex subunit mu-1 [Homo sapiens].	170	3e-42	O
		AP3M1	AP-3 complex subunit mu-1 [Homo sapiens].	152	5e-37	O
		AP3M1	AP-3 complex subunit mu-1 [Homo sapiens].	152	5e-37	O
		AP3M2	AP-3 complex subunit mu-2 [Homo sapiens].	149	6e-36	O
		AP3M2	AP-3 complex subunit mu-2 [Homo sapiens].	149	6e-36	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Ap2m1	AP-2 complex subunit mu [Mus musculus].	788	0.0	O
		Ap1m2	AP-1 complex subunit mu-2 isoform 1 [Mus musculus].	319	4e-87	O
		Ap1m2	AP-1 complex subunit mu-2 isoform 2 [Mus musculus].	318	5e-87	O
		Ap1m1	AP-1 complex subunit mu-1 [Mus musculus].	310	1e-84	O
		Ap4m1	AP-4 complex subunit mu-1 [Mus musculus].	175	8e-44	O
		Ap3m1	AP-3 complex subunit mu-1 [Mus musculus].	152	6e-37	O
		Ap3m2	AP-3 complex subunit mu-2 [Mus musculus].	147	2e-35	O
		Ap3m2	AP-3 complex subunit mu-2 [Mus musculus].	147	2e-35	O
		Ston2	stonin-2 [Mus musculus].	74.3	2e-13
		Ston1	stonin-1 [Mus musculus].	68.9	8e-12

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC607139	PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform b isoform 21 [Canis familiaris].	793	0.0	O
		LOC607139	PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform b isoform 8 [Canis familiaris].	793	0.0	O
		LOC607139	PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform 1 [Canis familiaris].	788	0.0	O
		LOC607139	PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform 19 [Canis familiaris].	788	0.0	O
		LOC607139	PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform b isoform 20 [Canis familiaris].	786	0.0	O
		LOC607139	PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform 16 [Canis familiaris].	783	0.0	O
		LOC607139	PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform b isoform 18 [Canis familiaris].	780	0.0	O
		LOC607139	PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform 14 [Canis familiaris].	780	0.0	O
		LOC607139	PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform b isoform 17 [Canis familiaris].	766	0.0	O
		LOC607139	PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform 25 [Canis familiaris].	763	0.0	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		AP2M1	AP-2 complex subunit mu [Bos taurus].	788	0.0	O
		AP1M2	AP-1 complex subunit mu-2 [Bos taurus].	318	5e-87	O
		AP1M1	AP-1 complex subunit mu-1 [Bos taurus].	311	7e-85	O
		AP4M1	AP-4 complex subunit mu-1 [Bos taurus].	172	6e-43	O
		AP3M1	AP-3 complex subunit mu-1 [Bos taurus].	155	8e-38	O
		AP3M2	AP-3 complex subunit mu-2 [Bos taurus].	149	6e-36	O
		AP3M2	PREDICTED: adaptor-related protein complex 3, mu 2 subunit [Bos taurus].	149	6e-36	O
		STON2	stonin-2 [Bos taurus].	75.5	1e-13
		STON2	PREDICTED: stonin 2 [Bos taurus].	75.5	1e-13
		STON1	stonin-1 [Bos taurus].	57.8	2e-08

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		AP2M1	adaptor-related protein complex 2, mu 1 subunit [Sus scrofa].	784	0.0	O
		AP1M1	adaptor-related protein complex 1, mu 1 subunit [Sus scrofa].	311	4e-85	O
		LOC100154867	PREDICTED: AP-3 complex subunit mu-1-like [Sus scrofa].	152	4e-37	O
		AP3M1	adaptor-related protein complex 3, mu 1 subunit [Sus scrofa].	152	4e-37	O
		AP3M2	PREDICTED: AP-3 complex subunit mu-2 [Sus scrofa].	141	7e-34	O
		LOC100157426	PREDICTED: LOW QUALITY PROTEIN: stonin-2-like [Sus scrofa].	76.3	4e-14

Alignment:      TOP