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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-007528

Length: 880

Sequence [FASTA format sequence]
GTGACGACAG AAGTGCCCTT GACCGGTGGG GCGGGCCGTG CTGTGCGTCG CTTCGCTCTC
GTTGCTGGGA GATGGCTCAG CGTCTTCTCC TGAGGAGGTT CCTGGCCTCT GTAGTCTCCA
GGAAGCCCTC TCATAGTCGG TGGGCACCCC TCGCTTCCAG AGCCCTGCAG ACCCCACAGC
TCAGCCTTAG TAACCTGACA GGAACACCCA GCCAAGCCCG GTCATTATAC ACTACCCGGG
TCTGTACAAC AACCTTTAAC ATCCAGGATG GACCTGACTT TCAAGACCGA GTTGTCAACA
GTGAGACGCC AGTGGTTGTG GATTTCCATG CACAGTGGTG TGGTCCCTGC AAGATCCTGG
GGCCAAGGTT AGAGAAGGTG GTGGCCAAGC AGCATGGAAA GGTGGTGATG GCCAAGGTGG
ATATCGACGA CCACACAGAC CTCGCCATCG AGTACGAGGT GCTCCAGTGA GGATCTGTGA
CCTTTAAGGG GAAGAAACCT GCCCACAATC GCAACGGGAG TCAATCAAGT TCAGCCCAGG
TAAGACGGGG CTGGCGCGGG TCTCAGCCCG GAGACCGGGG CCGGGGGAGC CCCGGGGCAC
TTGGGGGCAC CACTGCAGGG GCGCGCCCTT GCGGAAAGTG TTCTGGCAGA GGTTCCGTCG
GGCTTCGGGG CGGGGTCGGC CGGGTGGGAC GCCCCGCCCC GCCCGCGCCG CGCCTGCCCA
TATAAGGTGA GCGCGGCCCC AGCGCCCTGG GAGAGCGGTT GTCGTCACCT GCGTCCGTCG
GGTCCGTTCC CCCGGCGGCG GCGCAGCCCG CCCGCCCGCC CCGGGCATCC TTTCAAGGCC
GCGGCCCCCA GCGCCCTCCT GGCGGGGAGC GCCGCCCCGC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinTXN2thioredoxin, mitochondrial precursor [Homo sapiens]. 2292e-60O
Contig/Assembly ProteinPDIA4protein disulfide-isomerase A4 precursor [Homo sapiens]. 52.45e-07
Contig/Assembly ProteinTXNthioredoxin [Homo sapiens]. 51.21e-06O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinTxn2thioredoxin, mitochondrial precursor [Mus musculus]. 2186e-57O
Contig/Assembly ProteinPdia4protein disulfide-isomerase A4 [Mus musculus]. 53.52e-07
Contig/Assembly ProteinTxn1thioredoxin [Mus musculus]. 50.42e-06O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC474519PREDICTED: similar to Thioredoxin, mitochondrial precursor (Mt-Trx) (MTRX) (Thioredoxin-2) [Canis familiaris]. 2382e-63
Contig/Assembly ProteinLOC482715PREDICTED: similar to Protein disulfide-isomerase A4 precursor (Protein ERp-72) (ERp72) isoform 3 [Canis familiaris]. 52.84e-07
Contig/Assembly ProteinLOC482715PREDICTED: similar to Protein disulfide-isomerase A4 precursor (Protein ERp-72) (ERp72) isoform 1 [Canis familiaris]. 52.84e-07
Contig/Assembly ProteinLOC474798PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF) (Surface associated sulphydryl protein) (SASP) [Canis familiaris]. 51.61e-06


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinTXN2thioredoxin, mitochondrial precursor [Bos taurus]. 2387e-63O
Contig/Assembly ProteinPDIA4protein disulfide-isomerase A4 precursor [Bos taurus]. 52.84e-07
Contig/Assembly ProteinTXNthioredoxin [Bos taurus]. 52.45e-07O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinTXN2thioredoxin, mitochondrial [Sus scrofa]. 2644e-71O
Contig/Assembly ProteinTXNthioredoxin [Sus scrofa]. 524e-07O
Contig/Assembly ProteinLOC100522203PREDICTED: protein disulfide-isomerase A4-like [Sus scrofa]. 51.66e-07


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
CLNT10149H10CLNT1_0149_H10.bHX222973 
OVRT10144A04OVRT1_0144_A04.bHX238326 
PTG010043G05PTG01_0043_G05.bHX239191 
PTG010052C12PTG01_0052_C12.bFS708994 AK397007

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
238A200.500WNCAG/Q
G200.500CGG/R


Alignment:      TOP

20110601C-007528 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
CLNT1_0149_H10.b : nncccttagctgtggaatgttxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRT1_0144_A04.b : nnaaggttnnnnnnncctcgttagcgtacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PTG01_0052_C12.b : ntttttgactaacaxxxxxxxxxx
PTG01_0043_G05.b : nngggggttntnnggataaagcagcggxxxx
20110601C-007528 : ................GTGACGACAGAAGTGCCCTTGACCGGTGGGGCGGGCCGTGCTGT
---------+---------+---------+---------+---------+---------+ 44
CLNT1_0149_H10.b : xxxxxxxxxxxxxxxxGTGACGACAGAAGTGCCCTTGACCGGTGGGGCGGGCCGTGCTGT
OVRT1_0144_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxxGAAGTGCCCTTGACCGGTGGGGCGGGCCGTGCTGT
PTG01_0052_C12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTGACCGGTGGGGCGGGCCGTGCTGT
PTG01_0043_G05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxggCTTGACCGGTGGGGCGGGCCGTGCTGT
20110601C-007528 : GCGTCGCTTCGCTCTCGTTGCTGGGAGATGGCTCAGCGTCTTCTCCTGAGGAGGTTCCTG
---------+---------+---------+---------+---------+---------+ 104
CLNT1_0149_H10.b : GCGTCGCTTCGCTCTCGTTGCTGGGAGATGGCTCAGCGTCTTCTCCTGAGGAGGTTCCTG
OVRT1_0144_A04.b : GCGTCGCTTCGCTCTCGTTGCTGGGAGATGGCTCAGCGTCTTCTCCTGAGGAGGTTCCTG
PTG01_0052_C12.b : GCGTCGCTTCGCTCTCGTTGCTGGGAGATGGCTCAGCGTCTTCTCCTGAGGAGGTTCCTG
PTG01_0043_G05.b : GCGTCGCTTCGCTCTCGTTGCTGGGAGATGGCTCAGCGTCTTCTCCTGAGGAGGTTCCTG
20110601C-007528 : GCCTCTGTAGTCTCCAGGAAGCCCTCTCATAGTCGGTGGGCACCCCTCGCTTCCAGAGCC
---------+---------+---------+---------+---------+---------+ 164
CLNT1_0149_H10.b : GCCTCTGTAGTCTCCAGGAAGCCCTCTCATAGTCGGTGGGCACCCCTCGCTTCCAGAGCC
OVRT1_0144_A04.b : GCCTCTGTAGTCTCCAGGAAGCCCCCTCATAGTCGGTGGGCACCCCTCGCTTCCAGAGCC
PTG01_0052_C12.b : GCCTCTGTAGTCTCCAGGAAGCCCTCTCATAGTCGGTGGGCACCCCTCGCTTCCAGAGCC
PTG01_0043_G05.b : GCCTCTGTAGTCTCCAGGAAGCCCTCTCATAGTCGGTGGGCACCCCTCGCTTCCAGAGCC
20110601C-007528 : CTGCAGACCCCACAGCTCAGCCTTAGTAACCTGACAGGAACACCCAGCCAAGCCCGGTCA
---------+---------+---------+---------+---------+---------+ 224
CLNT1_0149_H10.b : CTGCAGACCCCACAGCTCAGCCTTAGTAACCTGACAGGAACACCCAGCCAAGCCCGGTCA
OVRT1_0144_A04.b : CTGCAGACCCCACAGCCCAGCCTTAGTAACCTGACAGGAACACCCAGCCAAGCCCGGTCA
PTG01_0052_C12.b : CTGCAGACCCCACAGCTCAGCCTTAGTAACCTGACAGGAACACCCAGCCAAGCCCGGTCA
PTG01_0043_G05.b : CTGCAGACCCCACAGCTCAGCCTTAGTAACCTGACAGGAACACCCAGCCAAGCCCGGTCA
20110601C-007528 : TTATACACTACCCGGGTCTGTACAACAACCTTTAACATCCAGGATGGACCTGACTTTCAA
---------+---------+---------+---------+---------+---------+ 284
CLNT1_0149_H10.b : TTATACACTACCCAGGTCTGTACAACAACCTTTAACATCCAGGATGGACCTGACTTTCAA
OVRT1_0144_A04.b : TTATACACTACCCAGGTCTGTACAACAACCTTTAACATCCAGGATGGACCTGACTTTCAA
PTG01_0052_C12.b : TTATACACTACCCGGGTCTGTACAACAACCTTTAACATCCAGGATGGACCTGACTTTCAA
PTG01_0043_G05.b : TTATACACTACCCGGGTCTGTACAACAACCTTTAACATCCAGGATGGACCTGACTTTCAA
20110601C-007528 : GACCGAGTTGTCAACAGTGAGACGCCAGTGGTTGTGGATTTCCATGCACAGTGGTGTGGT
---------+---------+---------+---------+---------+---------+ 344
CLNT1_0149_H10.b : GACCGAGTTGTCAACAGTGAGACGCCAGTGGTTGTGGATTTCCATGCACAGTGGTGTGGT
OVRT1_0144_A04.b : GATCGAGTTGTCAACAGTGAGACGCCAGTGGTTGTGGATTTCCATGCACAGTGGTGTGGT
PTG01_0052_C12.b : GACCGAGTTGTCAACAGTGAGACGCCAGTGGTTGTGGATTTCCATGCACAGTGGTGTGGT
PTG01_0043_G05.b : GACCGAGTTGTCAACAGTGAGACGCCAGTGGTTGTGGATTTCCATGCACAGTGGTGTGGT
20110601C-007528 : CCCTGCAAGATCCTGGGGCCAAGGTTAGAGAAGGTGGTGGCCAAGCAGCATGGAAAGGTG
---------+---------+---------+---------+---------+---------+ 404
CLNT1_0149_H10.b : CCCTGCAAGATCCTGGGGCCAAGGTTAGAGAAGGTGGTGGCCAAGCAGCATGGAAAGGTG
OVRT1_0144_A04.b : CCCTGCAAGATCCTGGGGCCAAGGTTAGAGAAGGTGGTGGCCAAGCAGCATGGAAAGGTG
PTG01_0052_C12.b : CCCTGCAAGATCCTGGGGCCAAGGTTAGAGAAGGTGGTGGCCAAGCAGCATGGAAAGGTG
PTG01_0043_G05.b : CCCTGCAAGATCCTGGGGCCAAGGTTAGAGAAGGTGGTGGCCAAGCAGCATGGAAAGGTG
20110601C-007528 : GTGATGGCCAAGGTGGATATCGACGACCACACAGACCTCGCCATCGAGTACGAGGTGCTC
---------+---------+---------+---------+---------+---------+ 464
CLNT1_0149_H10.b : GTGATGGCCAAGGTGGATATCGACGACCACACAGACCTCGCCATCGAGTACGAGGTGCTC
OVRT1_0144_A04.b : GTGATGGCCAAGGTGGATATCGACGACCACACAGACCTCGCCATCGAGTACGAGGTGCTC
PTG01_0052_C12.b : GTGATGGCCAAGGTGGATATCGACGACCACACAGACCTCGCCATCGAGTACGAGGTGCTC
PTG01_0043_G05.b : GTGATGGCCAAGGTGGATATCGACGACCACACAGACCTCGCCATCGAGTACGAGGTGCTC
20110601C-007528 : CAGTGAGGATCTGTGACCTTTAAGGGGAAGAAACCTGCCCACAATCGCAACGGGAGTCAA
---------+---------+---------+---------+---------+---------+ 524
CLNT1_0149_H10.b : CAGTGAGGATCTGTGACCTTTAAGGGGAAGAAACCTGCCCACAATCGCAACGGGAGTCAA
OVRT1_0144_A04.b : CAGTGAGGATCTGTGACCTTTAAGGGGAAGAAACCTGCCCACAATCGCAACGGGAGTCAA
PTG01_0052_C12.b : CAGTGAGGATCTGTGACCTTTAAGGGGAAGAAACCTGCCCACAATCGCAACGGGAGTCAA
PTG01_0043_G05.b : CAGTGAGGATCTGTGACCTTTAAGGGGAAGAAACCTGCCCACAATCGCAACGGGAGTCAA
20110601C-007528 : TCAAGTTCAGCCCAGGTAAGACGGGGCTGGCGCGGGTCTCAGCCCGGAGACCGGGGCCGG
---------+---------+---------+---------+---------+---------+ 584
CLNT1_0149_H10.b : TCAAGTTCAGCCCAGGTAAGACGGGGCTGGCGCGGGTCTCAGCCCGGAGACCGGGGCCGG
OVRT1_0144_A04.b : TCAAGTTCAGCCCAGGTAAGACGGGGCTGGCGCGGGTCTCAGCCCGGAGACCGGGGCCGG
PTG01_0052_C12.b : TCAAGTTCAGCCCAGGTAAGACGGGGCTGGCGCGGGTCTCAGCCCGGAGACCGGGGCCGG
PTG01_0043_G05.b : TCAAGTTCAGCCCAGGTAAGACGGGGCTGGCGCGGGTCTCAGCCCGGAGACCGGGGCCGG
20110601C-007528 : GGGAGCCCCGGGGCACTTGGGGGCACCACTGCAGGGGCGCGCCCTTGCGGAAAGTGTTCT
---------+---------+---------+---------+---------+---------+ 644
CLNT1_0149_H10.b : GGGAGCCCCGGGGCACTTGGGGGCACCACTGCAGGGGCGCGCCCTTGCGGAAAGTGTTCT
OVRT1_0144_A04.b : GGGAGCCCCGGGGCACTTGGGGGCACCACTGCAGGGGCGCGCCCTTGCGGNAAGTGTTCT
PTG01_0052_C12.b : GGGAGCCCCGGGGCACTTGGGGGCACCACTGCAGGGGCGCGCCCTTGCGGAAAGTGTTCT
PTG01_0043_G05.b : GGGAGCCCCGGGGCACTTGGGGGCACCACTGCAGGGGCGCGCCCTTGCGGAAAGTGTTCT
20110601C-007528 : GGCAGAGGTTCCGTCGGGCTTCGGGGCGGGGTCGGCCGGGTGGGACGCCCCGCCCCGCCC
---------+---------+---------+---------+---------+---------+ 704
CLNT1_0149_H10.b : GGCAGAGGTTCCGTCGGGCTTCGGGGCGGGGTCGGtttgtgtggtatacctcctcatgtc
OVRT1_0144_A04.b : GGCAGAGGTTCCGTCGGGCTTCGGGGCGGGGTCNGCCGGGTGGGAAcccccgccccgccc
PTG01_0052_C12.b : GGCAAAGGTTCCGTCGGGCTTcggggcggggtcggccgggtgggacgccccgccccgccc
PTG01_0043_G05.b : GGCAGAGGTTCCGTCGGGCTTcggggcggggtcggccgggtgggacgccccgccccgccc
20110601C-007528 : GCGCCGCGCCTGCCCATATAAGGTGAGCGCGGCCCCAGCGCCCTGGGAGAGCGGTTGTCG
---------+---------+---------+---------+---------+---------+ 764
CLNT1_0149_H10.b : gggccggtcctgttcaaatatagtgagtctgtcccctatgtcccttgcaatactgttttt
OVRT1_0144_A04.b : gcgccgcggcTTGCCATATAAGGTGAGCGCGGCCCCACCCCCCTGGGAAAACGGTTGTCG
PTG01_0052_C12.b : gcgccgcgccTGCCCATATAAGGTGAGCGCGGCCCCAGCGCCCTGGGAGAGCGGTTGTCG
PTG01_0043_G05.b : gcgccgcgccTGCCCATATAAGGTGAGCGCGGCCCCAGCGCCCTGGGAGAGCGGTTGTCG
20110601C-007528 : TCACCTGCGTCCGTCGGGTCCGTTCCCCCGG*CGGCGGCGCAGCCCGCCCGCCCGCCCCG
---------+---------+---------+---------+---------+---------+ 823
CLNT1_0149_H10.b : acccaccggtgtcgctcgatccagatctctaagtaggctgacaatcttccccttactata
OVRT1_0144_A04.b : TCACCGGCGTCgttgggttcggtcccccgggggcgggagcaccctgccccccgccccggg
PTG01_0052_C12.b : TCACCTGCGTCCGTCGGGTCGGTTcccccgggcggcggcgcagcccgcccgcccgcccgg
PTG01_0043_G05.b : TCACCTGCGTCCGTCGGGTTCGGTTccccgg*cggcggcgcaacccgcccgcccgccccg
20110601C-007528 : GGCATCCTTTCAAGGCCGCGGCCCCCAGCGCCCTCCTGGCGGGGAGCGCCGCCCCGC...
---------+---------+---------+---------+---------+---------+ 880
CLNT1_0149_H10.b : cacgggattcgtctataggggtattatctctctcgctttcttttcgcagaaatttattcg
OVRT1_0144_A04.b : tatcctttcagggccgcgccccctcagcccctccggccgggaagcgcccccccacccctc
PTG01_0052_C12.b : ggattctttcaaggccgcgccccccagcgcctttctggccggaacgccgccccgcctcgc
PTG01_0043_G05.b : ggcATCCTTTCAAGGCCGCGGCCCCCAGCGCCCTCCTGGCGGGGAGCGCCGCCCCGCtcg
20110601C-007528 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
CLNT1_0149_H10.b : cttgctcattttttctctactatctgtatatccggattagggaattatgttatttacttg
OVRT1_0144_A04.b : ttttgctcctcctttgggaaggcgccccggggcattcgctccatttagggacactaggga
PTG01_0052_C12.b : tttgcctctcccctggaaagctgcccgggggcatccgctcaaattagggcatctaggatt
PTG01_0043_G05.b : ctttgcctctcgtctggaaagctgccctggggcatccgctcacataagggactcaagaat
20110601C-007528 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
CLNT1_0149_H10.b : gaatcttaggtccacgtactattccgctccatatgcagtgtcttccacttcatatttgtt
OVRT1_0144_A04.b : ttggaacgggtcccggcccaccgtggtttcgcaccctgtggggtcctggaaactcccaaa
PTG01_0052_C12.b : ggaacgggcccgccccacccgggtttgggaccctgggggtccgaaatcccccaaaaaacg
PTG01_0043_G05.b : cggaagtgcccggccaacccggtttggccactgcggtcctggaatccccaagaaccaaga
20110601C-007528 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
CLNT1_0149_H10.b : tctatctcctcataatcccttgcagtgggtctggcttatatttacttttatatcttgcga
OVRT1_0144_A04.b : caaataaggaagggtgggttgtgtcaaattttaaaaaaaaggttttggtgggtctccgac
PTG01_0052_C12.b : ggagggggggtttgcccaaatttaaaaaagggaaggtggcttccggaaaccggaataaag
PTG01_0043_G05.b : agggtgggttgcccaaattaaaaaaaaggaatggtggcttccggaaccaaaataagggga
20110601C-007528 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
CLNT1_0149_H10.b : actgtgtgttttcgctcaccaaatttctcttctcggagccgattttacgaccgaatatta
OVRT1_0144_A04.b : aagcggaattatggtggagaggaatttcaccttttttgaggggcgccaccttgggggccc
PTG01_0052_C12.b : ggggagaaattcccccttttagagggcccccctctggggcccgataagcggggctcacct
PTG01_0043_G05.b : ggaaccacccctttaaggggcccaccttgggcccggaaggcctggatgccttttaaaaaa
20110601C-007528 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
CLNT1_0149_H10.b : gagcatatcttgcattggcttacaatcactaatcgcgatctacctttgttccgaatcata
OVRT1_0144_A04.b : gtaatacattatgattataaccatataaatacaaaaataaagggccttttcttcagccta
PTG01_0052_C12.b : ttttaaaaaaaaaaaagggcctgtgttcaatggggggggccctctaataacctagggggc
PTG01_0043_G05.b : aaaaaaaaggcttgttcaatgtggtggcccttaaattcccggggcaacttacgacccttt
20110601C-007528 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
CLNT1_0149_H10.b : ttgtcctcgcctatgttcgccattatgttactcttattgatttacaatataacctgttac
OVRT1_0144_A04.b : gacctcgcgccttaatattattaaaaatcctcgacctcctacaaaataaaatatggtgcg
PTG01_0052_C12.b : aaattacgacacctttttttaaaggtgcccaggggcttataaaagggggcgctttttacc
PTG01_0043_G05.b : tgaaagggcctagggatataaagcgggcgcttttacccgcggaaatatggttttgaacct
20110601C-007528 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
CLNT1_0149_H10.b : atattgaactacaatagtttagtcgtgcgtgttttgtatatgcagacctctagtgtccat
OVRT1_0144_A04.b : ggtgaaggtttttaccgtcgcactagtgcatattacagactccttacaaaaagactttcc
PTG01_0052_C12.b : ccggggaaaaattttttgttttttagaaccttttggggggttgtgaaccccacaatattc
PTG01_0043_G05.b : ttgggggatgcaccccaaaacccgaaaatttttatggccccgcgggggtttttaaaaaag
20110601C-007528 : ............................................................
---------+---------+---------+---------+---------+---------+ 880
CLNT1_0149_H10.b : gcctcattctgtctcatgtgccgtcatatctcgttcttatc
OVRT1_0144_A04.b : cgacccgttgcggcacatctctttcgtattttcaa
PTG01_0052_C12.b : tcggaaaatt
PTG01_0043_G05.b : aattttttaaccgccccgtaccnttttaccgcagtgttaaat