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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-008005

Length: 1,127

Sequence:  [FASTA format sequence]
GTTAAATGCT CTGCACACGG AAGATATCCT GCGTGATTAC CTGGAACGCA CAAGGTGTAA
AAAGCAAATC CAGGCTCTGC TAGACCAGCA CCAACAGCAA CCATGGCAAA ATTCGTTCTC
CTCACAGGTC TGGCCCTTCT GCTGAATGCT CAGCTAGGTT CTGCCTACCA GCTAATATGC
TACTTCACCA ACTGGGCCCA GTACCGGCCA GGCCTGGGGA GCTTCAAGCC TGACGACATC
GATCCCTGCC TTTGTACCCA CCTGGTCTAC GCCTTCGCCG GGATGCGCGA CAACGAGATC
ACCACCACTG AGGGGGATGA TGTGACTTTC TACCAGTCTT TCAATGGCCT GAAAAACAAA
AACAGCCAGT TGAAAACCCT CCTGGCCATT GGAGGCTGGA ACTTTGGAAC TGCCCCTTTC
ACTGCCATGG TTTCCACTGC GGAGAACCGC CAGACTTTCA TCACCTCAGT CATCAAATTT
CTGCGCCAGT ATGGGTTTGA TGGGCTGGAC TTCGATTGGG AGTACCCTGG CTCTCGCGGA
AGCCCTTCTC AGGACAAGCA TCTCTTCACT GTCCTGGTCC AGGAAATGCG TGAAGCTTTT
GAGCAGGAGG CCAAGCAAAC CAAGCAGGCC AGGCTGCTGG TCACCGCTGC AGTAGCTGCT
GGCGTCTCCA ACATCCAGTC TGGCTATGAG ATCCCCCAGC TGTCCCAGTA TCTGGACTAT
ATCCATGTCA TGACCTATGA CCTCCATGCC TCCTGGGAGG GCTATGCTGG AGAGAACAGC
CCCCTCTACA AATACCCAAC TGACACTGGC AGCAACGCTT ACCTCAATGT GGATTATGCC
ATGAACTACT GGAAGGACAA CGGGGCGCCA GCTGAGAAGC TCATCGTTGG ATTCCCTGCC
TATGGACACA CCTTCCTCCT GAGCAACCCT TCCAAACCGG ACATTGGTGC CCCCACTTCT
GGTGCTGGTC CTGCTGGGCC CTACACCAAG GAGGCTGGAA TCTGGGCCTA CTATGAGATC
TGCACCTTCC CGAAAAATGG AGCCACTCAG GCATGGGATG CCCCCTCAGA AGTGCCCTAT
GCCCTATAGG GCAATGAAAT GGGTTGGGTA TGACAATGTC AAGAGCT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CHIA	acidic mammalian chitinase isoform c [Homo sapiens].	553	e-157	O
		CHIA	acidic mammalian chitinase isoform a [Homo sapiens].	389	e-108	O
		CHIT1	chitotriosidase-1 precursor [Homo sapiens].	352	5e-97	O
		OVGP1	oviduct-specific glycoprotein precursor [Homo sapiens].	299	3e-81	O
		CHI3L1	chitinase-3-like protein 1 precursor [Homo sapiens].	286	3e-77	O
		CHI3L2	chitinase-3-like protein 2 isoform a [Homo sapiens].	266	3e-71	O
		CHI3L2	chitinase-3-like protein 2 isoform b [Homo sapiens].	266	3e-71	O
		CHI3L2	chitinase-3-like protein 2 isoform c [Homo sapiens].	202	5e-52	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Chia	acidic mammalian chitinase precursor [Mus musculus].	527	e-150	O
		Bclp2	PREDICTED: acidic mammalian chitinase [Mus musculus].	429	e-120	O
		Bclp2	PREDICTED: acidic mammalian chitinase [Mus musculus].	429	e-120	O
		Chi3l3	chitinase-3-like protein 3 precursor [Mus musculus].	424	e-119	O
		Chi3l4	chitinase-3-like protein 4 precursor [Mus musculus].	414	e-116	O
		BC051070	hypothetical protein LOC229688 [Mus musculus].	411	e-115	O
		Gm6522	PREDICTED: chitinase-3-like protein 4-like [Mus musculus].	404	e-113	O
		Chit1	chitotriosidase-1 precursor [Mus musculus].	311	6e-85	O
		Ovgp1	oviduct-specific glycoprotein precursor [Mus musculus].	310	2e-84	O
		Chi3l1	chitinase-3-like protein 1 [Mus musculus].	269	3e-72	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC479904	PREDICTED: similar to Acidic mammalian chitinase precursor (AMCase) (TSA1902) [Canis familiaris].	560	e-159	O
		LOC609807	PREDICTED: similar to Oviduct-specific glycoprotein precursor (Oviductal glycoprotein) (Oviductin) (Estrogen-dependent oviduct protein) (Mucin 9) [Canis familiaris].	293	2e-80	O
		CHI3L1	chitinase-3-like protein 1 [Canis lupus familiaris].	281	8e-76	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		CHIA	acidic mammalian chitinase precursor [Bos taurus].	521	e-148	O
		CHI3L1	chitinase-3-like protein 1 [Bos taurus].	290	2e-78	O
		OVGP1	oviduct-specific glycoprotein [Bos taurus].	243	2e-64	O
		LOC788983	PREDICTED: chitinase-3-like protein 1-like [Bos taurus].	105	7e-23	O
		CTBS	di-N-acetylchitobiase [Bos taurus].	51.6	1e-06	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		CHIA	PREDICTED: acidic mammalian chitinase [Sus scrofa].	608	e-174	O
		CHIT1	PREDICTED: chitotriosidase-1 [Sus scrofa].	340	8e-94	O
		OVGP1	oviduct-specific glycoprotein precursor [Sus scrofa].	301	3e-82	O
		LOC100620081	PREDICTED: oviduct-specific glycoprotein-like isoform 1 [Sus scrofa].	301	3e-82	O
		CHI3L1	chitinase-3-like protein 1 precursor [Sus scrofa].	290	1e-78	O
		LOC100620081	PREDICTED: oviduct-specific glycoprotein-like isoform 2 [Sus scrofa].	287	7e-78	O
		CHI3L2	PREDICTED: chitinase-3-like protein 2 [Sus scrofa].	262	2e-70	O
		LOC100037944	PREDICTED: chitinase-3-like protein 2 [Sus scrofa].	262	2e-70	O
		LOC100621951	PREDICTED: chitinase-3-like protein 1-like [Sus scrofa].	227	1e-59	O
		DENND2D	PREDICTED: DENN domain-containing protein 2D [Sus scrofa].	122	4e-28	O