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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-008168

Length: 1,858

Sequence:  [FASTA format sequence]
GTCGGTGATG GAAGGAGAGC ACGTTCCAGG GCTTGGGCAA AGGAGAGGGA GGTGGCACGC
CCCTCGATTT CTCTATTTTA AGGTGGGGGG GGGCTGTCTT TGTGTAGGAA GGGCTTTCTG
GGCTCTCCCA CCCCTGTGGG AAGCGTTCCC CACCCACTCA CCATCTGCCG AGGGGCAGGA
CCTCAAGGGC AGGAGATCAA CGACTAAGGA CAGCGCTGGG CTTTCTGAAA AGAGTGGAGA
CGAAGGCCTC GGCCCTTCGG GGGATCTGAC TCAAGGCATC ACCCCGCCTC GCCGCCCCCA
GTCCCGGCGC TAAGACCCAG CGGGCACGCC TGGCAGGCCC CGGCCCCTGA GCCCGCCCGC
CTGCCCGCCC GCTGGGCCGG GACGCCTGCT TGGCCGGGGA GAGCCGGCCG GCGCGGAGGG
GGCATGGCTC GGACGGCGTG GGGGCTGCTG TGGCTGCTGC TGGGCAGCGC AGGGGCGCAG
TACGAGAAGT ACAGCTTCCG GGGCTTCCCG CCCGAGGACC TGATGCCCCT GGCCGCGGCC
TACGGGCACG CGCTGGAGCA GTACGAGGGC GAGAGCTGGC GCGAGAGCGC GCGCTACCTC
GAGGCGGCGC TGCGGCTGCA CCGGCTGCTG CGGGACAGCG AGGCCTTCTG CCACGCCAAC
TGCAGCGGCC CCGCGCCGCC CTCCGCCGCG ACCCCCGGGC CGGCGCCGCC CGACCCCGAC
GGCGGTCACG AAGACGAGTG GGCCCGCGAG CTGCAGCTCT TCGGCCACGT CCTGGAGCGC
GCCGCCTGCC TGCGGCGCTG CAAGCGTTCG CTGCCCGCCT TCCAGGTGCC CTACCCGCCG
CGCCAGCTGC TGCGCGACTT CCAGAGCCGC CTGCCCTACC AGTACTTGCA CTACGCGCAG
TTCAAGGCTA ACCGGCTGGA GAAGGCGGTG GCCGCGGCCT ACACCTTCCT CCAGAGGAAC
CCGAAGCACG AGCTCACCGC CAAGTACCTC AACTACTATC GGGGGCTGCT GGACGCCGCC
GAGGAGCCCC TCACGGACTT GGAGGCCCAG CCCTACGAGG CCGTGTTCCT CCGGGCTGTG
AAGCTCTACA ACAGCGGCGA TTTCCGCGGC AGCACGGAGG ACATGGAGCG GGCCCTGGCC
GAGTACCTGG CCGTCTTTGC CCGGTGTCTG GCTGGCTGCG AGGGGGCCCA CGAGCAGGTG
GACTTCAAGG ACTTCTATCC ATCCATAGCA GGTATCTCCT GAGCCAGATT CCGGTGGGCA
TCCCTCTCAG CCACAGGTCC CTGCTTCCCA GAACTCCTGC AGCTCCTTAA CACAACATTC
ATCAGGTACA CGATTATGGC GCACCTACTA AGTGCTTGGG AGGCAGACAG GAGGAAGGCG
TTATCCAGAC TCGCAGCGCT TTCAGTCTCC TGAGAGAGGC TAACAGATCA CCTGCCACTG
GGTGCAGAGG GCTACAGTGG GCAATGTCCA AGGTGCTGGG CATCAGTGCA GAGAGGATGT
GACACCCCAG AGGGGTCTGG GGAGCCTGGA TTCTCAGGTC TTCCAGGCTG AGGGTGCTTC
AGGTGCCAAG GTGCCAAGGT GAGAAACAGC CCAGCAGGTG TGCGCAGAAA GCAGTTTGTG
GCCAGAAATC ACCCCGAGTC TGGAGATCCC TCAGTTGGGG GAAAAAGGAC TGGCCTGAGC
TTCTTTATCT GGGCCTCAGT CCCACCTCCC AACCTCATCT GCCATTCCTT CAGAGTGCCC
TGGCTTCCTC TGGCTTCGGG GTGGCGGCTG AACTGTGGGG GTGGTCTGCC CAGCCCACCA
GTAGCTTCCC TCAGCATCGC TCGTCACTTT ATACGCCTTA TCGCATANGA TCAGCTGG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		LEPREL4	synaptonemal complex protein SC65 [Homo sapiens].	419	e-117	O
		CRTAP	cartilage-associated protein precursor [Homo sapiens].	225	1e-58	O
		LEPRE1	prolyl 3-hydroxylase 1 isoform 3 precursor [Homo sapiens].	110	4e-24	O
		LEPRE1	prolyl 3-hydroxylase 1 isoform 1 precursor [Homo sapiens].	110	4e-24	O
		LEPRE1	prolyl 3-hydroxylase 1 isoform 2 precursor [Homo sapiens].	110	4e-24	O
		LEPREL1	prolyl 3-hydroxylase 2 isoform a [Homo sapiens].	89.4	1e-17	O
		LOC100653071	PREDICTED: cartilage-associated protein-like [Homo sapiens].	80.5	5e-15	O
		LEPREL2	prolyl 3-hydroxylase 3 precursor [Homo sapiens].	77.4	4e-14	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Leprel4	synaptonemal complex protein SC65 [Mus musculus].	416	e-116	O
		Crtap	cartilage-associated protein precursor [Mus musculus].	227	2e-59	O
		Lepre1	prolyl 3-hydroxylase 1 isoform 2 [Mus musculus].	106	7e-23	O
		Lepre1	prolyl 3-hydroxylase 1 isoform 1 [Mus musculus].	106	7e-23	O
		Leprel1	prolyl 3-hydroxylase 2 precursor [Mus musculus].	91.7	2e-18	O
		Leprel2	prolyl 3-hydroxylase 3 precursor [Mus musculus].	65.1	2e-10	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC607731	PREDICTED: similar to Nucleolar autoantigen No55 [Canis familiaris].	424	e-118	O
		LOC485577	PREDICTED: similar to Cartilage-associated protein precursor [Canis familiaris].	228	2e-59	O
		LOC606980	PREDICTED: similar to leprecan 1 [Canis familiaris].	108	1e-23	O
		LOC478674	PREDICTED: similar to leprecan-like 1 isoform 1 [Canis familiaris].	94.4	3e-19	O
		LOC486719	PREDICTED: similar to leprecan-like 2 isoform 1 [Canis familiaris].	62	2e-09
		LOC486719	PREDICTED: similar to leprecan-like 2 isoform 2 [Canis familiaris].	55.1	2e-07	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		LOC788823	PREDICTED: synaptonemal complex protein SC65, partial [Bos taurus].	296	5e-80	O
		LOC788823	PREDICTED: synaptonemal complex protein SC65-like, partial [Bos taurus].	266	4e-71	O
		CRTAP	cartilage-associated protein [Bos taurus].	224	2e-58	O
		CRTAP	PREDICTED: cartilage associated protein [Bos taurus].	224	2e-58	O
		LEPRE1	prolyl 3-hydroxylase 1 [Bos taurus].	107	3e-23	O
		LEPREL1	prolyl 3-hydroxylase 2 [Bos taurus].	93.6	5e-19	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LEPREL4	PREDICTED: synaptonemal complex protein SC65 [Sus scrofa].	453	e-127	O
		LOC100622574	PREDICTED: cartilage-associated protein-like, partial [Sus scrofa].	107	2e-23	O