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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-008792

Length: 886

Sequence:  [FASTA format sequence]
TGCCTGTGGC GCGCGCAGGG CTGACGGCGG CGGCAGTCAT GGCGGCTCCG TGTGTGAGGG
TGGCGCGGCG CAGCCTCTCG GCTTTAGCGT TGTCTCTCAG GCCCTCTCCC CGGCTGCTGT
GCACAGCCAC AAAACAGAAG AACAACGGCC AGAACTTGGA AGAGGACGCG GGTCAGAATG
AACAGAAGAC AGATCTTCCC TCTACAGAGA AGACCCTCAT GGAGGAGAAG GTCAAGCTGG
AAGAGCAGCT GAAGGAGGCC ATGGAAAAAT ACAAGCGAGC GTTGGCAGAT ACTGAGAACT
TTCGGCAGAG GAGCCAAAAA TTGGTGGAGG AAGCTAAACT CTATGGCATT CAGGGCTTCT
GCAAGGACCT GCTGGAGGTC GCAGACATCT TGGAGAAGGC GACACAGTCT GTCCCGAAGG
AAGAGATCAG AGACGACAAC CCCCACCTGA AGAACCTCTA CGAGGGGCTC CTGATGACCG
AGGCCCAGAT CCAGAAGGTG TTCACCAAGC ACGGCTTGCT CCGCCTGGAC CCCCTGGGCG
CCAAGTTCGA CCCGTACGAG CACGAGGCCT TGTTCCACAC GCCGGTGGAG GGCAAGGAGC
CGGGCACGGT GGCGCTGGTT AACAAAGTGG GCTACAAGCT GCACGGGCGC ACCCTGAGGC
CCGCCCTGGT GGGGGTGGTG AAGGAGGCCT AGCCGCCGCC AGGGCTGCTG GCGTTTGCAG
GTGACTCTCA GAAAGCCGGT TGTCTTTGCT CCTGCCAGTG CTTTGGACTT TCCCTGACCC
CCGTTGGAAG GCTTCNNGTC AAACGGCGCC ACAGAACAGC AAGCCAGTTG CGCAGTCGTG
TCAACAGACT GGAGCTGGGG AGTCGTTCGT TGATTTTCCA TGCATA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		GRPEL1	grpE protein homolog 1, mitochondrial precursor [Homo sapiens].	322	2e-88	O
		GRPEL2	grpE protein homolog 2, mitochondrial precursor [Homo sapiens].	157	9e-39	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Grpel1	grpE protein homolog 1, mitochondrial precursor [Mus musculus].	318	3e-87	O
		Grpel2	grpE protein homolog 2, mitochondrial precursor [Mus musculus].	150	1e-36	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC488784	PREDICTED: similar to GrpE protein homolog 1, mitochondrial precursor (Mt-GrpE#1) (HMGE) [Canis familiaris].	322	4e-88
		LOC489195	PREDICTED: similar to GrpE protein homolog 2, mitochondrial precursor (Mt-GrpE#2) [Canis familiaris].	153	2e-37

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		GRPEL1	grpE protein homolog 1, mitochondrial precursor [Bos taurus].	335	3e-92	O
		GRPEL2	grpE protein homolog 2, mitochondrial precursor [Bos taurus].	153	2e-37	O
		LOC615521	GrpE-like 2, mitochondrial-like [Bos taurus].	144	8e-35	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100622145	PREDICTED: grpE protein homolog 1, mitochondrial-like [Sus scrofa].	379	e-106
		LOC100513650	PREDICTED: grpE protein homolog 2, mitochondrial-like isoform 2 [Sus scrofa].	147	8e-36	O
		LOC100513650	PREDICTED: grpE protein homolog 2, mitochondrial-like isoform 1 [Sus scrofa].	147	8e-36	O

Alignment:      TOP

20110601C-008792 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LVRM1_0021_G09.b :            nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BFLT1_0152_A12.b :  nnnnccgttagcgnaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0018_B04.b : tagcaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLN01_0058_F05.b :        nnngggtaggacatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-008792 : ............TGCCTGTGGCGCGCGCAGGGCTGACGGCGGCGGCAGTCATGGCGGCTC
                   ---------+---------+---------+---------+---------+---------+ 48
LVRM1_0021_G09.b : xxxxxxxxxxxxTGCCTGTGGCGCGCGCAGGGCTGACGGCGGCGGCAGTCATGGCGGCTC
BFLT1_0152_A12.b : xxxxxxxxxxxxTGCCTGTGGCGCGCGCAGGGCTGACGGCGGCGGCAGTCATGGCGGCTC
THY01_0018_B04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGCAGGGCTGACGGCGGCGGCAGTCATGGCGGCTC
MLN01_0058_F05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGCAGGGCTGACGGCGGCGGCAGTCATGGCGGCTC


20110601C-008792 : CGTGTGTGAGGGTGGCGCGGCGCAGCCTCTCGGCTTTAGCGTTGTCTCTCAGGCCCTCTC
                   ---------+---------+---------+---------+---------+---------+ 108
LVRM1_0021_G09.b : CGTGTGTGAGGGTGGCGCGGCGCAGCCTCTCGGCTTTAGCGTTGTCTCTCAGGCCCTCTC
BFLT1_0152_A12.b : CGTGTGTGAGGGTGGCGCGGCGCAGCCTCTCGGCTTTAGCGTTGTCTCTCAGGCCCTCTC
THY01_0018_B04.b : CGTGTGTGAGGGTGGCGCGGCGCAGCCTCTCGGCTTTAGCGTTGTCTCTCAGGCCCTCTC
MLN01_0058_F05.b : CGTGTGTGAGGGTGGCGCGGCGCAGCCTCTCGGCTTTAGCGTTGTCTCTCAGGCCCTCTC


20110601C-008792 : CCCGGCTGCTGTGCACAGCCACAAAACAGAAGAACAACGGCCAGAACTTGGAAGAGGACG
                   ---------+---------+---------+---------+---------+---------+ 168
LVRM1_0021_G09.b : CCCGGCTGCTGTGCACAGCCACAAAACAGAAGAACAACGGCCAGAACTTGGAAGAGGACG
BFLT1_0152_A12.b : CCCGGCTGCTGTGCACAGCCACAAAACAGAAGAACAACGGCCAGAACTTGGAAGAGGACG
THY01_0018_B04.b : CCCGGCTGCTGTGCACAGCCACAAAACAGAAGAACAACGGCCAGAACTTGGAAGAGGACG
MLN01_0058_F05.b : CCCGGCTGCTGTGCACAGCCACAAAACAGAAGAACAACGGCCAGAACTTGGAAGAGGACG


20110601C-008792 : CGGGTCAGAATGAACAGAAGACAGATCTTCCCTCTACAGAGAAGACCCTCATGGAGGAGA
                   ---------+---------+---------+---------+---------+---------+ 228
LVRM1_0021_G09.b : CGGGTCAGAATGAACAGAAGACAGATCTTCCCTCTACAGAGAAGACCCTCATGGAGGAGA
BFLT1_0152_A12.b : CGGGTCAGAATGAACAGAAGACAGATCTTCCCTCTACAGAGAAGACCCTCATGGAGGAGA
THY01_0018_B04.b : CGGGTCAGAATGAACAGAAGACAGATCTTCCCTCTACAGAGAAGACCCTCATGGAGGAGA
MLN01_0058_F05.b : CGGGTCAGAATGAACAGAAGACAGATCTTCCCTCTACAGAGAAGACCCTCATGGAGGAGA


20110601C-008792 : AGGTCAAGCTGGAAGAGCAGCTGAAGGAGGCCATGGAAAAATACAAGCGAGCGTTGGCAG
                   ---------+---------+---------+---------+---------+---------+ 288
LVRM1_0021_G09.b : AGGTCAAGCTGGAAGAGCAGCTGAAGGAGGCCATGGAAAAATACAAGCGAGCTTTGGCAG
BFLT1_0152_A12.b : AGGTCAAGCTGGAAGAGCAGCTGAAGGAGGCCATGGAAAAATACAAGCGAGCGTTGGCAG
THY01_0018_B04.b : AGGTCAAGCTGGAAGAGCAGCTGAAGGAGGCCATGGAAAAATACAAGCGAGCTTTGGCAG
MLN01_0058_F05.b : AGGTCAAGCTGGAAGAGCAGCTGAAGGAGGCCATGGAAAAATACAAGCGAGCGTTGGCAG


20110601C-008792 : ATACTGAGAACTTTCGGCAGAGGAGCCAAAAATTGGTGGAGGAAGCTAAACTCTATGGCA
                   ---------+---------+---------+---------+---------+---------+ 348
LVRM1_0021_G09.b : ATACTGAGAACTTTCGGCAGAGGAGCCAAAAATTGGTGGAGGAAGCTAAACTCTATGGCA
BFLT1_0152_A12.b : ATACTGAGAACTTTCGGCAGAGGAGCCAAAAATTGGTGGAGGAAGCTAAACTCTATGGCA
THY01_0018_B04.b : ATACTGAGAACTTTCGGCAGAGGAGCCAAAAATTGGTGGAGGAAGCTAAACTCTATGGCA
MLN01_0058_F05.b : ATACTGAGAACTTTCGGCAGAGGAGCCAAAAATTGGTGGAGGAAGCTAAACTCTATGGCA


20110601C-008792 : TTCAGGGCTTCTGCAAGGACCTGCTGGAGGTCGCAGACATCTTGGAGAAGGCGACACAGT
                   ---------+---------+---------+---------+---------+---------+ 408
LVRM1_0021_G09.b : TTCAGGGCTTCTGCAAGGACCTGCTGGAGGTCGCAGACATCTTGGAGAAGGCGACACAGT
BFLT1_0152_A12.b : TTCAGGGCTTCTGCAAGGACCTGCTGGAGGTCGCAGACATCTTGGAGAAGGCGACACAGT
THY01_0018_B04.b : TTCAGGGCTTCTGCAAGGACCTGCTGGAGGTCGCAGACATCTTGGAGAAGGCGACACAGT
MLN01_0058_F05.b : TTCAGGGCTTCTGCAAGGACCTGCTGGAGGTCGCAGACATCTTGGAGAAGGCGACACAGT


20110601C-008792 : CTGTCCCGAAGGAAGAGATCAGAGACGACAACCCCCACCTGAAGAACCTCTACGAGGGGC
                   ---------+---------+---------+---------+---------+---------+ 468
LVRM1_0021_G09.b : CTGTCCCGAAGGAAGAGATCAGAGACGACAACCCCCACCTGAAGGACCTCTACGAGGGGC
BFLT1_0152_A12.b : CTGTCCCGAAGGAAGAGATCAGAGACGACAACCCCCACCTGAAGAACCTCTACGAGGGGC
THY01_0018_B04.b : CTGTCCCGAAGGAAGAGATCAGAGACGACAACCCCCACCTGAAGAACCTCTACGAGGGGC
MLN01_0058_F05.b : CTGTCCCGAAGGAAGAGATCAGAGACGACAGCCCCCACCTGAAGAACCTCTACGAGGGGC


20110601C-008792 : TCCTGATGACCGAGGCCCAGATCCAGAAGGTGTTCACCAAGCACGGCTTGCTCCGCCTGG
                   ---------+---------+---------+---------+---------+---------+ 528
LVRM1_0021_G09.b : TCCTGATGACCGAGGCCCAGATCCAGAAGGTGTTCACCAAGCACGGCTTGCTCCGTCTGG
BFLT1_0152_A12.b : TCCTGATGACCGAGGCCCAGATCCAGAAGGTGTTCACCAAGCACGGCTTGCTCCGCCTGG
THY01_0018_B04.b : TCCTGATGACCGAGGCCCAGATCCAGAAGGTGTTCACCAAGCACGGCTTGCTCCGCCTGG
MLN01_0058_F05.b : TCCTGATGACCGAGGCCCAGATCCAGAAGGTGTTCACCAAGCATGGCTTGCTCCGCCTGG


20110601C-008792 : ACCCCCTGGGCGCCAAGTTCGACCCGTACGAGCACGAGGCCTTGTTCCACACGCCGGTGG
                   ---------+---------+---------+---------+---------+---------+ 588
LVRM1_0021_G09.b : ACCCCCTGGGCGCCNAGTTCGACCCATACGAGCACGAGGCCTTGTTCCACACGCCGGTGG
BFLT1_0152_A12.b : ACCCCCTGGGCGCCAAGTTCGACCCGTACGAGCACGAGGCCTTGTTCCACACGCCGGTGG
THY01_0018_B04.b : ACCCCCTGGGCGCCAAGTTCGACCCGTACGAGCACGAGGCCTTGTTCCACACGCCGGTGG
MLN01_0058_F05.b : ACCCCCTGGGCGCCAAGTTCGACCCGTACGAGCACGAGGCCTTGTTCCACACGCCGGTGG


20110601C-008792 : AGGGCAAGGAGCCGGGCACGGTGGCGCTGGTTAACAAAGTGGGCTACAAGCTGCACGGGC
                   ---------+---------+---------+---------+---------+---------+ 648
LVRM1_0021_G09.b : AAGGCAAGGAGCCAGGCACGGTGGCGCTGGTTAA*ACAGTGGGCTACAAGCTGCCCGGGC
BFLT1_0152_A12.b : AGGGCAAGGAGCCGGGCACGGTGGCGCTGGTTAACAAAGTGGGCTACAAGCTGCACGGGC
THY01_0018_B04.b : AGGGCAAGGAGCCGGGCACGGTGGCGCTGGTTAACAAAGTGGGCTACAAGCTGCACGGGC
MLN01_0058_F05.b : AGGGCAAGGAGCCGGGCACGGTGGCGCTGGTTAACAAAGTGGGCTACAAGCTGCACGGGC


20110601C-008792 : GCACCCTGAGGCCCGCCCTGGTGGGGGTGGTGAAGGAGGCCTAGCCGCCGCCAGGGCTGC
                   ---------+---------+---------+---------+---------+---------+ 708
LVRM1_0021_G09.b : caccttgaagccgccctggcgggcgtcgtgaagaatgaccggaaaaataaacatacgggg
BFLT1_0152_A12.b : GCACCCTGAGGCCCGCCCTGGTGGGGGTGGTGAAGGAGGCCTAGCCGCCGCCAGGGCTGC
THY01_0018_B04.b : GCACCCTGAGGCCCGCCCTGGTGTGGGGGGTGAAGGAGGCCTcacccgcccccgggctgc
MLN01_0058_F05.b : GCACCCTGAGGCCCGCCCTGGTGGGGGTGGTGAAGGAGGCCTAGCCGCCGCCAGGGCTGC


20110601C-008792 : TGGCGTTTGCAGGTGACTCTCAGAAAGCCGGTTGTCTTTGCTCCTGCCAGTGCTTTGGAC
                   ---------+---------+---------+---------+---------+---------+ 768
LVRM1_0021_G09.b : agtagcctgagtgtggcgcgcccgagttaaggccagtcagttgcggtggcggcgaacgct
BFLT1_0152_A12.b : TGGCGTTTGCAGGTGACTCTCAGAAAGGCGGTTTGTCTTGCTCCCTGCAGTGCTTTGACC
THY01_0018_B04.b : ttggcgttgcaagtgactctcaaaagtcggctgcccttgctccctgccatgctttgacct
MLN01_0058_F05.b : TGGCGTTTGCAGGTGACTCTCAGAAAGCCGGTTGTCTTTGCTCCTGCCAGTGCTTTTGAC


20110601C-008792 : TTTCCCTGACCCCCGTTGGAAGGCTTCNNGTCAAACGGCGCCACAGAACAGCAAGCCAGT
                   ---------+---------+---------+---------+---------+---------+ 828
LVRM1_0021_G09.b :                                                            
BFLT1_0152_A12.b : CTTTCCTGACCCCCGTTGGAAGGCTTCNNNGTCACACGCGCCACAGGACAGC*AGCCAGT
THY01_0018_B04.b : ttcctcgacccccctggaaagtttctggcacccctacgccccaaaatacaaaccatttcc
MLN01_0058_F05.b : TTTCCCTGACCCCCGTTGGAAGGCTTCNNGTCACACGGCGCCACAGAACAGCAAGCCAGT


20110601C-008792 : TGCGCAGTCGTGTCAACAGACTGGAGCTGGGGAGTCGTTCGTTGATTTTCCATGCATA..
                   ---------+---------+---------+---------+---------+---------+ 886
LVRM1_0021_G09.b :                                                             
BFLT1_0152_A12.b : TGCGCAGTCGTGTCAACAGACTGGAGCTGGGGAGTCGTTCGTTGAATTTTCATGCATAnt
THY01_0018_B04.b : caactctagcaccaaactggacctg                                  
MLN01_0058_F05.b : TGCGCAGTCGTGTCAACAGACTGGAGCTGGGGAGTCGNTCGTTGATTTTCcatgcatatt


20110601C-008792 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 886
LVRM1_0021_G09.b :                                                             
BFLT1_0152_A12.b : tgatagatggtgtgctgacggatcgctgccggaaccttcgggtgtcgtgaaaaccctgtg
THY01_0018_B04.b :                                                             
MLN01_0058_F05.b : tgataantggtgtgctgacggatcgctgccggagcctccggtgtcgtgaaaaacactgtg


20110601C-008792 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 886
LVRM1_0021_G09.b :                                                             
BFLT1_0152_A12.b : tctgctcaaactctgtgacttcgagggtttgaaagaaataaaagtccatttcgggtaaaa
THY01_0018_B04.b :                                                             
MLN01_0058_F05.b : tctgctcagactctggtgacctcagagggttgagatgaataaaaggcgatggcgggcaaa


20110601C-008792 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 886
LVRM1_0021_G09.b :                                                             
BFLT1_0152_A12.b : aaaaaaaaaaaaaaaaaagccatttgctcagcttcgggtcgggccctaaaaatttaaaaa
THY01_0018_B04.b :                                                             
MLN01_0058_F05.b : aaaaaaaaaaaaaggccaatgtgcttccacctcaannnnnnnnnnnnnnnnnnnnnnnnn


20110601C-008792 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 886
LVRM1_0021_G09.b :                                                             
BFLT1_0152_A12.b : aaaacccccccctcccccggaaccgaaaaaaaagaaaggaattttgtttttacttttttg
THY01_0018_B04.b :                                                             
MLN01_0058_F05.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-008792 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 886
LVRM1_0021_G09.b :                                                             
BFLT1_0152_A12.b : ccccctaagggttcaaaaaaaaaaacccccaatttcccaaaaacttttttcgccctcatg
THY01_0018_B04.b :                                                             
MLN01_0058_F05.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn


20110601C-008792 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 886
LVRM1_0021_G09.b :                                                             
BFLT1_0152_A12.b : gggggggtcccaccaaaatttttatgttgggcccgggcgacccaaataattcttttctcc
THY01_0018_B04.b :                                                             
MLN01_0058_F05.b : nnnnnnnnnnnnnnnnnnnn                                       


20110601C-008792 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 886
LVRM1_0021_G09.b :                                                             
BFLT1_0152_A12.b : ccaaaaaagacggggtgtgggggggaagaaaataaaaagaa                  
THY01_0018_B04.b :                                                             
MLN01_0058_F05.b :