[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-008878
Length:
953
Sequence:
[FASTA format sequence]
GAAGGGGCGG TTGCGGCGGG GCTCCGCGGG CCCGGGATCC AGCGGCTGCC ATGAACTTCT
CGGAGGTGTT CAAGCTCTCC AACCTGCTCT GCAAGTTCTC CCCCGACGGC AAGTACCTGG
CCTCCTGCGT CCAGTACCGG TTGGTGGTTC GAGATGCCAG CACCCTTCAG ATCCTCCAGC
TGTACACGTG CCTGGACCAG ATCCAGCACA TCGAGTGGTC GGCCGACTCG CTCTTCATCC
TGTGCGCCCT CTACAGGCGG GGGCTGGTGC AGGTGTGGTC TTTGGAGCAG CCAGACTGGC
ACTGCAAAAT AGATGAGGGC TCTGCAGGGC TGGTGGCTTC CTGCTGGAGC CCAGACGGGC
GGCACATCCT CAACACAACA GAGTTCCACC TGCGGATAAC TGTCTGGTCC TTATGCACGA
AGTCTGTGTC CTACATCAAA TACCCTAAAG CTTGTCAGCA GGGAATAACC TTTACCAGGG
ACGGCCGCTA CCTGGCCTTG GCGGAGAGAC GGGACTGCAG GGACCACGTG AGCATCTTTG
TCTGCAGCGA CTGGCAGCTC CTGCGGCACT TTGAGACGGA CACACAGGAC CTGGCAGGGA
TCGAGTGGGC CCCCAACGGC TGCGTGCTGG CGGCCTGGGA CACCTGCCTG GAGTACAAGA
TCCTGCTCTA CTCCCTGGAC GGCCGGCTGC TGTCCACCTA CTGCGCCTAC GAGTGGTCCC
TGGGCATCAA GTCGGTGGCT TGGAGCCCCA GCAGTCAGTT CCTGGCAGTC GGGAGCTACG
ACGGAAAGGT GCGCGTTCTC AACCACGTGA CGTGGAAGCT GCTCGCAGAG CTGGGGCATC
CTGCGGCTGT CAGCAGCCCC AGCACAGTGG TGTACAGGGA GGCAGAGAAA AGCCCGCCAC
TGGCGCTGGG CCGCCTGGCC TTCCCTCAAC CAGAGCCCCG GCCGGTCCCC GGG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | WRAP73 | WD repeat-containing protein WRAP73 [Homo sapiens]. | 568 | e-162 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | Wdr8 | WD repeat domain 8 [Mus musculus]. | 572 | e-163 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC479584 | PREDICTED: similar to WD-repeat protein 8 [Canis familiaris]. | 581 | e-166 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | WRAP73 | WD repeat-containing protein 8 [Bos taurus]. | 568 | e-162 | O |
![]() |
![]() | WDR8 | PREDICTED: WD repeat domain 8 [Bos taurus]. | 568 | e-162 | O |
![]() |
![]() | LOC789691 | PREDICTED: hypothetical protein, partial [Bos taurus]. | 240 | 1e-63 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC100512788 | PREDICTED: WD repeat-containing protein 8-like [Sus scrofa]. | 613 | e-176 | O |
|
|
20110601C-008878 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVR01_0055_G10.b : nttgcttggactataacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0006_H12.b : cxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ILNT1_0023_B12.b : nnnnccgaagtagaggcagtagtattxxx
OVRM1_0159_F01.b : tagttg
OVR01_0021_D12.b : ttggggttgxx
20110601C-008878 : ..................GAAGGGGCGGTTGCGGCGGGGCTCCGCGGGCCCGGGATCCAG
---------+---------+---------+---------+---------+---------+ 42
OVR01_0055_G10.b : xxxxxxxxxxxxxxxxxxGAAGGGGCGGTTGCGGCGGGGCTCCGCGGGCCCGGGATCCAG
LVRM1_0006_H12.b : xxxxxxxxxxxxxxxxxxxxxGGGGCGGTTGCGGCGGGGCTCCGCGGGCCCGGGATCCAG
ILNT1_0023_B12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxgGCGGCGGGGCTCCGCGGGCCCGGGATCCAG
OVRM1_0159_F01.b : tcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCAG
OVR01_0021_D12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-008878 : CGGCTGCCATGAACTTCTCGGAGGTGTTCAAGCTCTCCAACCTGCTCTGCAAGTTCTCCC
---------+---------+---------+---------+---------+---------+ 102
OVR01_0055_G10.b : CGGCTGCCATGAACTTCTCGGAGGTGTTCAAGCTCTCCAACCTGCTCTGCAAGTTCTCCC
LVRM1_0006_H12.b : CGGCTGCCATGAACTTCTCGGAGGTGTTCAAGCTCTCCAACCTGCTCTGCAAGTTCTCCC
ILNT1_0023_B12.b : CGGCTGCCATGAACTTCTCGGAGGTGTTCAAGCTCTCCAACCTGCTCTGCAAGTTCTCCC
OVRM1_0159_F01.b : CGGCTGCCATGAACTTCTCGGAGGTGTTCAAGCTCTCCAACCTGCTCTGCAAGTTCTCCC
OVR01_0021_D12.b : xxxxxxxxxxxxxCTTCTCGGAGGTGTTCAAGCTCTCCAACCTGCTCTGCAAGTTCTCCC
20110601C-008878 : CCGACGGCAAGTACCTGGCCTCCTGCGTCCAGTACCGGTTGGTGGTTCGAGATGCCAGCA
---------+---------+---------+---------+---------+---------+ 162
OVR01_0055_G10.b : CCGACGGCAAGTACCTGGCCTCCTGCGTCCAGTACCGGTTGGTGGTTCGAGATGCCAGCA
LVRM1_0006_H12.b : CCGACGGCAAGTACCTGGCCTCCTGCGTCCAGTACCGGTTGGTGGTTCGAGATGCCAGCA
ILNT1_0023_B12.b : CCGACGGCAAGTACCTGGCCTCCTGCGTCCAGTACCGGTTGGTGGTTCGAGATGCCAGCA
OVRM1_0159_F01.b : CCGACGGCAAGTACCTGGCCTCCTGCGTCCAGTACCGGTTGGTGGTTCGAGATGCCAGCA
OVR01_0021_D12.b : CCGACGGCAAGTACCTGGCCTCCTGCGTCCAGTACCGGTTGGTGGTTCGAGATGCCAGCA
20110601C-008878 : CCCTTCAGATCCTCCAGCTGTACACGTGCCTGGACCAGATCCAGCACATCGAGTGGTCGG
---------+---------+---------+---------+---------+---------+ 222
OVR01_0055_G10.b : CCCTTCAGATCCTCCAGCTGTACACGTGCCTGGACCAGATCCAGCACATCGAGTGGTCGG
LVRM1_0006_H12.b : CCCTTCAGATCCTCCAGCTGTACACGTGCCTGGACCAGATCCAGCACATCGAGTGGTCGG
ILNT1_0023_B12.b : CCCTTCAGATCCTCCAGCTGTACACGTGCCTGGACCAGATCCAGCACATCGAGTGGTCGG
OVRM1_0159_F01.b : CCCTTCAGATCCTCCAGCTGTACACGTGCCTGGACCAGATCCAGCACATCGAGTGGTCGG
OVR01_0021_D12.b : CCCTTCAGATCCTCCAGCTGTACACGTGCCTGGACCAGATCCAGCACATCGAGTGGTCGG
20110601C-008878 : CCGACTCGCTCTTCATCCTGTGCGCCCTCTACAGGCGGGGGCTGGTGCAGGTGTGGTCTT
---------+---------+---------+---------+---------+---------+ 282
OVR01_0055_G10.b : CCGACTCGCTCTTCATCCTGTGCGCCCTCTACAGGCGGGGGCTGGTGCAGGTGTGGTCTT
LVRM1_0006_H12.b : CCGACTCGCTCTTCATCCTGTGCGCCCTCTACAGGCGGGGGCTGGTGCAGGTGTGGTCTT
ILNT1_0023_B12.b : CCGACTCGCTCTTCATCCTGTGCGCCCTCTACAGGCGGGGGCTGGTGCAGGTGTGGTCTT
OVRM1_0159_F01.b : CCGACTTGCTCTTCATCCTGTGCGCCCTCTACAGGCGGGGGCTGGTGCAGGTGTGGTCTT
OVR01_0021_D12.b : CCGACTCGCTCTTCATCCTGTGCGCCCTCTACAGGCGGGGGCTGGTGCAGGTGTGGTCTT
20110601C-008878 : TGGAGCAGCCAGACTGGCACTGCAAAATAGATGAGGGCTCTGCAGGGCTGGTGGCTTCCT
---------+---------+---------+---------+---------+---------+ 342
OVR01_0055_G10.b : TGGAGCAGCCAGACTGGCACTGCAAAATAGATGAGGGCTCTGCAGGGCTGGTGGCTTCCT
LVRM1_0006_H12.b : TGGAGCAGCCAGACTGGCACTGCAAAATAGATGAGGGCTCTGCAGGGCTGGTGGCTTCCT
ILNT1_0023_B12.b : TGGAGCAGCCAGACTGGCACTGCAAAATAGATGAGGGCTCTGCAGGGCTGGTGGCTTCCT
OVRM1_0159_F01.b : TGGAGCAGCCAGACTGGCACTGCAAAATAGATGAGGGCTCTGCAGGGCTGGTGGCTTCCT
OVR01_0021_D12.b : TGGAGCAGCCAGACTGGCACTGCAAAATAGATGAGGGCTCTGCAGGGCTGGTGGCTTCCT
20110601C-008878 : GCTGGAGCCCAGACGGGCGGCACATCCTCAACACAACAGAGTTCCACCTGCGGATAACTG
---------+---------+---------+---------+---------+---------+ 402
OVR01_0055_G10.b : GCTGGAGCCCAGACGGGCGGCACATCCTCAACACAACAGAGTTCCACCTGCGGATAACTG
LVRM1_0006_H12.b : GCTGGAGCCCGGACGGGCGGCACATCCTCAACACAACAGAGTTCCACCTGCGGATAACTG
ILNT1_0023_B12.b : GCTGGAGCCCAGACGGGCGGCACATCCTCAACACAACAGAGTTCCACCTGCGGATAACTG
OVRM1_0159_F01.b : GCTGGAGCCCGGACGGGCGGCACATCCTCAACACAACAGAGTTCCACCTGCGGATAACTG
OVR01_0021_D12.b : GCTGGAGCCCAGACGGGCGGCACATCCTCAACACAACAGAGTTCCACCTGCGGATAACTG
20110601C-008878 : TCTGGTCCTTATGCACGAAGTCTGTGTCCTACATCAAATACCCTAAAGCTTGTCAGCAGG
---------+---------+---------+---------+---------+---------+ 462
OVR01_0055_G10.b : TCTGGTCCTTATGCACGAAGTCTGTGTCCTACATCAAATACCCTAAAGCTTGTCAGCAGG
LVRM1_0006_H12.b : TCTGGTCCTTATGCACGAAGTCTGTGTCCTACATCAAATACCCTAAAGCTTGTCAGCAGG
ILNT1_0023_B12.b : TCTGGTCCTTATGCACGAAGTCTGTGTCCTACATCAAATACCCTAAAGCTTGTCAGCAGG
OVRM1_0159_F01.b : TCTGGTCCTTATGCACGAAGTCTGTGTCCTACATCAAATACCCTAAAGCTTGTCAGCAGG
OVR01_0021_D12.b : TCTGGTCCTTATGCACGAAGTCTGTGTCCTACATCAAATACCCTAAAGCTTGTCAGCAGG
20110601C-008878 : GAATAACCTTTACCAGGGACGGCCGCTACCTGGCCTTGGCGGAGAGACGGGACTGCAGGG
---------+---------+---------+---------+---------+---------+ 522
OVR01_0055_G10.b : GAATAACCTTTACCAGGGACGGCCGCTACCTGGCCTTGGCGGAGAGACGGGACTGCAGGG
LVRM1_0006_H12.b : GAATAACCTTTACCAGGGACGGCCGCTACCTGGCCTTGGCGGAGAGACGGGACTGCAGGG
ILNT1_0023_B12.b : GAATAACCTTTACCAGGGACGGCCGCTACCTGGCCTTGGCGGAGAGACGGGACTGCAGGG
OVRM1_0159_F01.b : GAATAACCTTTACCAGGGACGGCCGCTACCTGGCCTTGGCGGAGAGACGGGACTGCAGGG
OVR01_0021_D12.b : GAATAACCTTTACCAGGGACGGCCGCTACCTGGCCTTGGCGGAGAGACGGGACTGCAGGG
20110601C-008878 : ACCACGTGAGCATCTTTGTCTGCAGCGACTGGCAGCTCCTGCGGCACTTTGAGACGGACA
---------+---------+---------+---------+---------+---------+ 582
OVR01_0055_G10.b : ACCACGTGAGCATCTTTGTCTGCAGCGACTGGCAGCTCCTGCGGCACTTTGAGACGGACA
LVRM1_0006_H12.b : ACCACGTGAGCATCTTTGTCTGCAGCGACTGGCAACTCCTGCGGCACTTTGAGACGGACA
ILNT1_0023_B12.b : ACCACGTGAGCATCTTTGTCTGCAGCGACTGGCAGCTCCTGCGGCACTTTGAGACGGACA
OVRM1_0159_F01.b : ACCACGTGAGCATCTTTGTCTGCAGCGACTGGCAGCTCCTGCGGCACTTTGAGACGGACA
OVR01_0021_D12.b : ACCACGTGAGCATCTTTGTCTGCAGCGACTGGCAGCTCCTGCGGCACTTTGAGACGGACA
20110601C-008878 : CACAGGACCTGGCAGGGATCGAGTGGGCCCCCAACGGCTGCGTGCTGGCGGCCTGGGACA
---------+---------+---------+---------+---------+---------+ 642
OVR01_0055_G10.b : CACAGGACCTGGCAGGGATCGAGTGGGCCCCCAACGGCTGCGTGCTGGCGGCCTGGGACA
LVRM1_0006_H12.b : CACAGGACCTGGCAGGGATCGAGTGGGCCCCCAACGGCTGCGTGCTGGCGGCCTGGGACA
ILNT1_0023_B12.b : CACAGGACCTGGCAGGGATCGAGTGGGCCCCCAACGGCTGCGTGCTGGCGGCCTGGGACA
OVRM1_0159_F01.b : CACAGGACCTGGCAGGGATCGAGTGGGCCCCCAACGGCTGCGTGCTGGCGGCCTGGGACA
OVR01_0021_D12.b : CACAGGACCTGGCAGGGATCGAGTGGGCCCCCAACGGCTGCGTGCTGGCGGCCTGGGACA
20110601C-008878 : CCTGCCTGGAGTACAAGATCCTGCTCTACTCCCTGGACGGCCGGCTGCTGTCCACCTACT
---------+---------+---------+---------+---------+---------+ 702
OVR01_0055_G10.b : CCTGCCTGGAGTACAAGATCCTGCTCTACTCCCTGGACGGCCGGCTGCTGTCCACCTACT
LVRM1_0006_H12.b : CCTGCCTGGAGTACAAGATCCTGCTCTACTCCCTGGACGGCCGGCTGCTGTCCACCTACT
ILNT1_0023_B12.b : CCTGCCTGGAGTACAAGATCCTGCTCTACTCCCTGGACGGCCGGCTGCTGTCCACCTACT
OVRM1_0159_F01.b : CCTGCCTGGAGTACAAGATCCTGCTCTACTCCCTGGACGGCCGGCTGCTGTCCACCTACT
OVR01_0021_D12.b : CCTGCCTGGAGTACAAGATCCTGCTCTACTCCCTGGACGGCCGGCTGCTGTCCACCTACT
20110601C-008878 : GCGCCTACGAGTGGTCCCTGGGCATCAAGTCGGTGGCTTGGAGCCCCAGCAGTCAGTTCC
---------+---------+---------+---------+---------+---------+ 762
OVR01_0055_G10.b : GCGCCTACGAGTGGTCCCTGGGCATCAAGTCGGTGGCTTGGAGCCCCAGCAGTCAGTTCC
LVRM1_0006_H12.b : GCGCCTACNAGTGGTCCCTGGGCATCAAGTCNGTGGCTGGAAGCCCCAGCAGTCAGTTCC
ILNT1_0023_B12.b : GCGCCTACGAGTGGTCCCTGGGCATCAAGTCGGTGGCTTGAAGCCCCAGCAGTCAGTTCC
OVRM1_0159_F01.b : GCGCCTACGAGTGGTCCCTGGGCATCAAGTCGGTGGCTTGGAGCCCCAGCAGTCAATTCC
OVR01_0021_D12.b : GCGCCTACGAGTGGTCCCTGGGCATCAAGTCGGTGGCTTGGAGCCCCAGCAGTCAGTTCC
20110601C-008878 : TGGCAGTCGGGAGCTACGACGGAAAGGTGCGCGTTCTCAACCACGTGACGTGGAAGCTGC
---------+---------+---------+---------+---------+---------+ 822
OVR01_0055_G10.b : TGGCAGTCGGGAGCTACCACGGAAAGGTGCGCGTTCTCAACCACGTGACCTGGAACCTGC
LVRM1_0006_H12.b : TGTCAGTTCGGAGCTACTACNGAAAAGTGCGCCGTCTCACACACGTGACGTGAAAGCTGC
ILNT1_0023_B12.b : TGGCAGTCGGGAGCTACGACGGAAAGGTGCGCGTTCTCAACCACGTGACGTGGAAGCTGC
OVRM1_0159_F01.b : T
OVR01_0021_D12.b : TGGCAGTCGGGAGCTACGACGGAAAGGTGCGCGTTCTCAACCACGTGACGTGGAAGCTGC
20110601C-008878 : TCGCAGAGCTGGGGCATCCTGCGGCTGTCAGCAGCCCCAGCACAGTGGTGTACAGGGAGG
---------+---------+---------+---------+---------+---------+ 882
OVR01_0055_G10.b : TCGCAGAGCTGGGGCATCCctgcggctgtcagcagcccccaacacaatggttgtacaggg
LVRM1_0006_H12.b : TCGCAa
ILNT1_0023_B12.b : TCGCAGAGCTGGGGCATCCTGCGGCTGTCAACAGCCCCAGCACAATGGTGTACAGGGAAG
OVRM1_0159_F01.b :
OVR01_0021_D12.b : TCGCAGAGCTGGGGCATCCTGCGGCTGTCAGCAGCCCCAGCACAGTGGTGTACAGGGAGG
20110601C-008878 : CAGAGAAAAGCCCGCCACTGGCGCTGGGCCGCCTGGCCTTCCCTCAACCAGAGCCCCGGC
---------+---------+---------+---------+---------+---------+ 942
OVR01_0055_G10.b : aaggcaaaaaaaaaacccgccccctgggccctgggccccccttggccttttccttccacc
LVRM1_0006_H12.b :
ILNT1_0023_B12.b : CAGAAAAGAGCCGCCCACTGGCGCTTGGCCGCCTGgccttccctccacccaagccccgcc
OVRM1_0159_F01.b :
OVR01_0021_D12.b : CAGAGAAAAGCCCGCCACTGGCGCTGGGCCGCCTGGCCTTCCCTCAACCAGAGCCCCGGC
20110601C-008878 : CGGTCCCCGGG.................................................
---------+---------+---------+---------+---------+---------+ 953
OVR01_0055_G10.b : caaaaaacccccggccggttcccccggggccccccccccaaaaagccaaaaatttgaaat
LVRM1_0006_H12.b :
ILNT1_0023_B12.b : cggtccccggcccacccagagaaccaatattaatcccccacggtgccggcctccctccga
OVRM1_0159_F01.b :
OVR01_0021_D12.b : CGGTCCCCGGGtcaccccagagagcaaatatgagatcgccccggtgcccggcctccctcc
20110601C-008878 : ............................................................
---------+---------+---------+---------+---------+---------+ 953
OVR01_0055_G10.b : tccccccaccggtgtcccggcccttcccttccgggaaatttttaaaac
LVRM1_0006_H12.b :
ILNT1_0023_B12.b : atcctaaaccccacggaaaaaaaaccaacccaagaatgggcactggggccctggcctttc
OVRM1_0159_F01.b :
OVR01_0021_D12.b : ggactctgaaacccacggagaaaaaagccacccccgaggagggggattcggggccctggc
20110601C-008878 : ............................................................
---------+---------+---------+---------+---------+---------+ 953
OVR01_0055_G10.b :
LVRM1_0006_H12.b :
ILNT1_0023_B12.b : actcggaaaatatacttctggcccaaaaaaacaaaacaatcccagacccctttggaattt
OVRM1_0159_F01.b :
OVR01_0021_D12.b : ctttcattttggaaaacttactttcctggcccaccaaggaagcgaaaaggat
20110601C-008878 : ............................................................
---------+---------+---------+---------+---------+---------+ 953
OVR01_0055_G10.b :
LVRM1_0006_H12.b :
ILNT1_0023_B12.b : gggaattccggaagctaaagcctctcttggtggtgaaaaaatctttccgcttgtgggccc
OVRM1_0159_F01.b :
OVR01_0021_D12.b :
20110601C-008878 : ............................................................
---------+---------+---------+---------+---------+---------+ 953
OVR01_0055_G10.b :
LVRM1_0006_H12.b :
ILNT1_0023_B12.b : tttccggtgggacagagagagcccccggcgtacatttctcacgaggagcccacgattaat
OVRM1_0159_F01.b :
OVR01_0021_D12.b :
20110601C-008878 : ............................................................
---------+---------+---------+---------+---------+---------+ 953
OVR01_0055_G10.b :
LVRM1_0006_H12.b :
ILNT1_0023_B12.b : cttgagtcccccgccgcttttctttcatttaagtacccccgaaaaagacatttttta
OVRM1_0159_F01.b :
OVR01_0021_D12.b :