Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-009074

Sequence: [FASTA format sequence] CACTTTGCCA GGGGTTCTGC TTGAACCAGG GGGTGACCAT GACCTGCTGT GAAGGCTGGA CAGCCTGCAA TGGATTCAGC CTGCTGGTTC TACTGCTGCT GGGAGTCATT CTCAACGCAA TACCTTTCGT GGTCAACTTG GTTGATGAAG ATGAAGTTTT TCAAAACCCC ATCTCTTGCT TTGAGCGGTG GTTCCCCGGA ATTGTCGGCG CAGGTCTGAT GGCCATTCCT GCAACGACAA TGTCCTTGGC AGCGAGAAAA AGAGCATGCT GCAACAACAA GAGCGGGATG TTTCTTTCGT CACTTCTGAA TGTGATCACA GTCATTGGTG GCGGGTACTG CCTGCTGGTG TCTTTCCAGG CTCTGTGGGA AGGCCCTCTC ATTTGTAACT CTGAAAGCAA CAGCACTCTC AGCTGTGAAA TTTCTTTACG AAACCTAACT GTCCATCATC TAGACTCCCT CAATCTGCAG TGGTTCTTCA ATGATTCTTG TGTTGCTTCG ACGGATTTCA ATAATCCCTA CATCAATGAC ACAGCGATCC GTAACGGCTT AAATTTCGAC TCTATAGAAA ACAAACACAG GATTATCCAC TTCTCAGTGT ATCTAGGTCT ACTGCTTGTG GGCTTTCTTG AGATCCTGTT TGGGCTCAGT CAGATACTCA TTGGCTTCCT TGGCTGTCTG TGTGATGGGG TCTCAAAGCC AAGAAGAAAC CAGATTGTGT AGCTAAAGAA TAAAATGGAA GAGTCCCCGC TGTGGCCCAA TGGGATCGGT GGTGTGTCTG CACCAGGACG CAAGTTTGAT TCCCAGGCGG GCAAAGTTGG TTAAAGTATC TGGCGTTGCA GCTGGTCACA ACTGTGGCCC CAATCTGATC CTCTGCCCAG AACATATACC ATGGAGTGCC CCCCCCAAAA AAAAAATGCA AATAATAATT TGAACCATTT GAAAAAGATA TTTAAAATCT GCTTTTACAA GTTATAAGTC CAATAAGGAA AATTATCAAA AACGGGGCCA ATTTATCCCA AGGTTTTTAA AAAGTCTCTT TGGAGTGACT TAAAAAAAAA AAAAAAAGGC CATTGGCCCA ACTGAAGTCG GGGCCCTAAA AATCAAAAAA AAAACCCCAC CCCCCCCGAA TAAAAAAAAA

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
TM4SF20 transmembrane 4 L6 family member 20 [Homo sapiens]. 287 1e-77 O

		Locus	Definition	Score	E value	FL
		TM4SF20	transmembrane 4 L6 family member 20 [Homo sapiens].	287	1e-77	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Tm4sf20 transmembrane 4 L6 family member 20 [Mus musculus]. 273 1e-73 O

		Locus	Definition	Score	E value	FL
		Tm4sf20	transmembrane 4 L6 family member 20 [Mus musculus].	273	1e-73	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC609780 PREDICTED: similar to transmembrane 4 L six family member 20 [Canis familiaris]. 273 3e-73 O

		Locus	Definition	Score	E value	FL
		LOC609780	PREDICTED: similar to transmembrane 4 L six family member 20 [Canis familiaris].	273	3e-73	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
TM4SF20 transmembrane 4 L6 family member 20 [Bos taurus]. 304 1e-82 O

		Locus	Definition	Score	E value	FL
		TM4SF20	transmembrane 4 L6 family member 20 [Bos taurus].	304	1e-82	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
LOC100513630 PREDICTED: transmembrane 4 L6 family member 20-like [Sus scrofa]. 410 e-115 O

		Locus	Definition	Score	E value	FL
		LOC100513630	PREDICTED: transmembrane 4 L6 family member 20-like [Sus scrofa].	410	e-115	O

Assembly Members: 6 TOP

Library Plate Loc. Read Name Accession Full Seq.

CLNT1 0019 G11 CLNT1_0019_G11.b FS658590
CLNT1 0032 B05 CLNT1_0032_B05.b FS659540
CLNT1 0086 D03 CLNT1_0086_D03.b FS663249
CLNT1 0086 D04 CLNT1_0086_D04.b FS663250
CLNT1 0151 F12 CLNT1_0151_F12.b HX223112
CLNT1 0152 H05 CLNT1_0152_H05.b HX223207

SNP: 1 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
432 A 4 0 0.667 W N AAC/N
G 2 0 0.333 GAC/D

Alignment: TOP

20110601C-009074 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
CLNT1_0019_G11.b :    ttccttcagcgtacgagtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0086_D04.b : nggcnccgatagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0151_F12.b :  nnnnccgtcagcgnaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0086_D03.b :    gaaacgtttgctgtcgcatgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0032_B05.b :    gaaaccgtctgcgnaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0152_H05.b :  nnnnnccgtcagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-009074 : ............CACTTTGCCAGGGGTTCTGCTTGAACCAGGGGGTGACCATGACCTGCT
                   ---------+---------+---------+---------+---------+---------+ 48
CLNT1_0019_G11.b : xxxxxxcattggCACTTTGCCAGGGGTTCTGCTTGAACCAGGGGGTGACCATGACCTGCT
CLNT1_0086_D04.b : xxxxxxxxxxxxCACTTTGCCAGGGGTTCTGCTTGAACCAGGGGGTGACCATGACCTGCT
CLNT1_0151_F12.b : xxxxxxxxxxxxCACTTTGCCAGGGGTTCTGCTTGAACCAGGGGGTGACCATGACCTGCT
CLNT1_0086_D03.b : xxxxxxxxxxxxtACTTTGCCAGGGGTTCTGCTTGAACCAGGGGGTGACCATGACCTGCT
CLNT1_0032_B05.b : xxxxxxxxxxxagACTTTGCCAGGGGTTCTGCTTGAACCAGGGGGTGACCATGACCTGCT
CLNT1_0152_H05.b : xxxxxxxxxxxcgatTTTGCCAGGGGTTCTGCTTGAACCAGGGGGTGACCATGACCTGCT


20110601C-009074 : GTGAAGGCTGGACAGCCTGCAATGGATTCAGCCTGCTGGTTCTACTGCTGCTGGGAGTCA
                   ---------+---------+---------+---------+---------+---------+ 108
CLNT1_0019_G11.b : GTGAAGGCTGGACAGCCTGCAATGGATTCAGCCTGCTGGTTCTACTGCTGCTGGGAGTCA
CLNT1_0086_D04.b : GTGAAGGCTGGACAGCCTGCAATGGATTCAGCCTGCTGGTTCTACTGCTGCTGGGAGTCA
CLNT1_0151_F12.b : GTGAAGGCTGGACAGCCTGCAATGGATTCAGCCTGCTGGTTCTACTGCTGCTGGGAGTCA
CLNT1_0086_D03.b : GTGAAGGCTGGACAGCCTGCAATGGATTCAGCCTGCTGGTTCTACTGCTGCTGGGAGTCA
CLNT1_0032_B05.b : GTGAAGGCTGGACAGCCTGCAATGGATTCAGCCTGCTGGTTCTACTGCTGCTGGGAGTCA
CLNT1_0152_H05.b : GTGAAGGCTGGACAGCCTGCAATGGATTCAGCCTGCTGGTTCTACTGCTGCTGGGAGTCA


20110601C-009074 : TTCTCAACGCAATACCTTTCGTGGTCAACTTGGTTGATGAAGATGAAGTTTTTCAAAACC
                   ---------+---------+---------+---------+---------+---------+ 168
CLNT1_0019_G11.b : TTCTCAACGCAATACCTTTCGTGGTCAACTTGGTTGATGAAGATGAAGTTTTTCAAAACC
CLNT1_0086_D04.b : TTCTCAACGCAATACCTTTCGTGGTCAACTTGGTTGATGAAGATGAAGTTTTTCAAAACC
CLNT1_0151_F12.b : TTCTCAACGCAATACCTTTCGTGGTCAACTTGGTTGATGAAGATGAAGTTTTTCAAAACC
CLNT1_0086_D03.b : TTCTCAACGCAATACCTTTCGTGGTCAACTTGGTTGATGAAGATGAAGTTTTTCAAAACC
CLNT1_0032_B05.b : TTCTCAACGCAATACCTTTCGTGGTCAACTTGGTTGATGAAGATGAAGTTTTTCAAAACC
CLNT1_0152_H05.b : TTCTCAACGCAATACCTTTCGTGGTCAACTTGGTTGATGAAGATGAAGTTTTTCAAAACC


20110601C-009074 : CCATCTCTTGCTTTGAGCGGTGGTTCCCCGGAATTGTCGGCGCAGGTCTGATGGCCATTC
                   ---------+---------+---------+---------+---------+---------+ 228
CLNT1_0019_G11.b : CCATCTCTTGCTTTGAGCGGTGGTTCCCCGGAATTGTCGGCGCAGGTCTGATGGCCATTC
CLNT1_0086_D04.b : CCATCTCTTGCTTTGAGCGGTGGTTCCCCGGAATTGTCGGCGCAGGTCTGATGGCCATTC
CLNT1_0151_F12.b : CCATCTCTTGCTTTGAGCGGTGGTTCCCCGGAATTGTCGGCGCAGGTCTGATGGCCATTC
CLNT1_0086_D03.b : CCATCTCTTGCTTTGAGCGGTGGTTCCCCGGAATTGTCGGCGCAGGTCTGATGGCCATTC
CLNT1_0032_B05.b : CCATCTCTTGCTTTGAGCGGTGGTTCCCCGGAATTGTCGGCGCAGGTCTGATGGCCATTC
CLNT1_0152_H05.b : CCATCTCTTGCTTTGAGCGGTGGTTCCCCGGAATTGTCGGCGCAGGTCTGATGGCCATTC


20110601C-009074 : CTGCAACGACAATGTCCTTGGCAGCGAGAAAAAGAGCATGCTGCAACAACAAGAGCGGGA
                   ---------+---------+---------+---------+---------+---------+ 288
CLNT1_0019_G11.b : CTGCAACGACAATGTCCTTGGCAGCGAGAAAAAGAGCATGCTGCAACAACAAGAGCGGGA
CLNT1_0086_D04.b : CTGCAACGACAATGTCCTTGGCAGCGAGAAAAAGAGCATGCTGCAACAACAAGAGCGGGA
CLNT1_0151_F12.b : CTGCAACGACAATGTCCTTGGCAGCGAGAAAAAGAGCATGCTGCAACAACAAGAGCGGGA
CLNT1_0086_D03.b : CTGCAACGACAATGTCCTTGGCAGCGAGAAAAAGAGCATGCTGCAACAACAAGAGCGGGA
CLNT1_0032_B05.b : CTGCAACGACAATGTCCTTGGCAGCGAGAAAAAGAGCATGCTGCAACAACAAGAGCGGGA
CLNT1_0152_H05.b : CTGCAACGACAATGTCCTTGGCAGCGAGAAAAAGAGCATGCTGCAACAACAAGAGCGGGA


20110601C-009074 : TGTTTCTTTCGTCACTTCTGAATGTGATCACAGTCATTGGTGGCGGGTACTGCCTGCTGG
                   ---------+---------+---------+---------+---------+---------+ 348
CLNT1_0019_G11.b : TGTTTCTTTCGTCACTTCTGAATGTGATCACAGTCATTGGTGGCGGGTACTGCCTGCTGG
CLNT1_0086_D04.b : TGTTTCTTTCGTCACTTCTGAATGTGATCACAGTCATTGGTGGCGGGTACTGCCTGCTGG
CLNT1_0151_F12.b : TGTTTCTTTCGTCACTTCTGAATGTGATCACAGTCATTGGTGGCGGGTACTGCCTGCTGG
CLNT1_0086_D03.b : TGTTTCTTTCGTCACTTCTGAATGTGATCACAGTCATTGGTGGCGGGTACTGCCTGCTGG
CLNT1_0032_B05.b : TGTTTCTTTCGTCACTTCTGAATGTGATCACAGTCATTGGTGGCGGGTACTGCCTGCTGG
CLNT1_0152_H05.b : TGTTTCTTTCGTCACTTCTGAATGTGATCACAGTCATTGGTGGCGGGTACTGCCTGCTGG


20110601C-009074 : TGTCTTTCCAGGCTCTGTGGGAAGGCCCTCTCATTTGTAACTCTGAAAGCAACAGCACTC
                   ---------+---------+---------+---------+---------+---------+ 408
CLNT1_0019_G11.b : TGTCTTTCCAGGCTCTGTGGGAAGGCCCTCTCATTTGTAACTCTGAAAGCAACAGCACTC
CLNT1_0086_D04.b : TGTCTTTCCAGGCTCTGTGGGAAGGCCCTCTCATTTGTAACTCTGAAAGCAACAGCACTC
CLNT1_0151_F12.b : TGTCTTTCCAGGCTCTGTGGGAAGGCCCTCTCATTTGTAACTCTCAAAGCAACAGCACTC
CLNT1_0086_D03.b : TGTCTTTCCAGGCTCTGTGGGAAGGCCCTCTCATTTGTAACTCTGAAAGCAACAGCACTC
CLNT1_0032_B05.b : TGTCTTTCCAGGCTCTGTGGGAAGGCCCTCTCATTTGTAACTCTGAAAGCAACAGCACTC
CLNT1_0152_H05.b : TGTCTTTCCAGGCTCTGTGGGAAGGCCCTCTCATTTGTAACTCTGAAAGCAACAGCACTC


20110601C-009074 : TCAGCTGTGAAATTTCTTTACGAAACCTAACTGTCCATCATCTAGACTCCCTCAATCTGC
                   ---------+---------+---------+---------+---------+---------+ 468
CLNT1_0019_G11.b : TCAGCTGTGAAATTTCTTTACGAAACCTAACTGTCCATCATCTAGACTCCCTCAATCTGC
CLNT1_0086_D04.b : TCAGCTGTGAAATTTCTTTACGAGACCTAACTGTCCATCATCTAGACTCCCTCAATCTGC
CLNT1_0151_F12.b : TCAGCTGTGAAATTTCTTTACGAAACCTAACTGTCCATCATCTAGACTCCCTCAATCTGC
CLNT1_0086_D03.b : TCAGCTGTGAAATTTCTTTACGAGACCTAACTGTCCATCATCTAGACTCCCTCAATCTGC
CLNT1_0032_B05.b : TCAGCTGTGAAATTTCTTTACGAAACCTAACTGTCCATCATCTAGACTCCCTCAATCTGC
CLNT1_0152_H05.b : TCAGCTGTGAAATTTCTTTACGAAACCTAACTGTCCATCATCTAGACTCCCTCAATCTGC


20110601C-009074 : AGTGGTTCTTCAATGATTCTTGTGTTGCTTCGACGGATTTCAATAATCCCTACATCAATG
                   ---------+---------+---------+---------+---------+---------+ 528
CLNT1_0019_G11.b : AGTGGTTCTTCAATGATTCTTGTGTTGCTTCGACGGATTTCAATAATCCCTACATCAATG
CLNT1_0086_D04.b : AGTGGTTCTTCAATGATTCTTGTGTTGCTTCGACGGATTTCAATAATCCCTACATCAATG
CLNT1_0151_F12.b : AGTGGTTCTTCAATGATTCTTGTGTTGCTTCGACGGATTTCAATAATCCCTACATCAATG
CLNT1_0086_D03.b : AGTGGTTCTTCAATGATTCTTGTGTTGCTTCGACGGATTTCAATAATCCCTACATCAATG
CLNT1_0032_B05.b : AGTGGTTCTTCAATGATTCTTGTGTTGCTTCGACGGATTTCAATAATCCCTACATCAATG
CLNT1_0152_H05.b : AGTGGTTCTTCAATGATTCTTGTGTTGCTTCGACGGATTTCAATAATCCCTACATCAATG


20110601C-009074 : ACACAGCGATCCGTAACGGCTTAAATTTCGACTCTATAGAAAACAAACACAGGATTATCC
                   ---------+---------+---------+---------+---------+---------+ 588
CLNT1_0019_G11.b : ACACAGCGATCCGTAACGGCTTAAATTTCGACTCTATAGAAAACAAACACAGGATTATCC
CLNT1_0086_D04.b : ACACAGCGATCCGTAACGGCTTAAATTTCGACTCTATAGAAAACAAACACAGGATTATCC
CLNT1_0151_F12.b : ACACAGCGATCCGTAACGGCTTAAATTTCGACTCTCTAGAAAACAAACACAGGATTATCC
CLNT1_0086_D03.b : ACACAGCGATCCGTAACGGCTTAAATTTCGACTCTATAGAAAACAAACACAGGATTATCC
CLNT1_0032_B05.b : ACACAGCGATCCGTAACGGCTTAAATTTCGACTCTATAGAAAACAAACACAGGATTATCC
CLNT1_0152_H05.b : ACACAGCGATCCGTAACGGCTTAAATTTCGACTCTATAGAAAACAAACACAGGATTATCC


20110601C-009074 : ACTTCTCAGTGTATCTAGGTCTACTGCTTGTGGGCTTTCTTGAGATCCTGTTTGGGCTCA
                   ---------+---------+---------+---------+---------+---------+ 648
CLNT1_0019_G11.b : ACTTCTCAGTGTATCTAGGTCTACTGCTTGTGGGCTTTCTTGAGATCCTGTTTGGGCTCA
CLNT1_0086_D04.b : ACTTCTCAGTGTATCTAGGTCTACTGCTTGTGGGCTTTCTTGAGATCCTGTTTGGGCTCA
CLNT1_0151_F12.b : ACTTCTCAGTGTATCTAGGTCTACTGCTTGTGGGCTTTCTTGAGATCCTGTTTGGGCTCA
CLNT1_0086_D03.b : ACTTCTCAGTGTATCTAGGTCTACTGCTTGTGGGCTTTCTTGAGATCCTGTTTGGGCTCA
CLNT1_0032_B05.b : ACTTCTCAGTGTATCTAGGTCTACTGCTTGTGGGCTTTCTTGAGATCCTGTTTGGGCTCA
CLNT1_0152_H05.b : ACTTCTCAGTGTATCTAGGTCTACTGCTTGTGGGCTTTCTTGAGATCCTGTTTGGGCTCA


20110601C-009074 : GTCAGATACTCATTGGCTTCCTTGGCTGTCTGTGTGATGGGGTCTCAAAGCCAAGAAGAA
                   ---------+---------+---------+---------+---------+---------+ 708
CLNT1_0019_G11.b : GTCAGATACTCATTGGCTTCCTTGGCTGTCTGTGTGATGGGGTCTCAAAGCCAAGAAGAA
CLNT1_0086_D04.b : GTCAGATACTCATTGGCTTCCTTGGCTGTCTGTGTGATGGGGTCTCAAAGCCAAGAAGAA
CLNT1_0151_F12.b : GTCAGATACTCATTGGCTTCCTTGGCTGTCTGTGTGATGGGGTCTCAAAGCCAAGAAGAA
CLNT1_0086_D03.b : GTCAGATACTCATTGGCTTCCTTGGCTGTCTGTGTGATGGGGTCTCAAAGCCAAGAAGAA
CLNT1_0032_B05.b : GTCAGATACTCATTGGCTTCCTTGGCTGTCTGTGTGATGGGGTCTCAAAGCCAAGAAGAA
CLNT1_0152_H05.b : GTCAGATACTCATTGGCTTCCTTGGCTGTCTGTGTGATGGGGTCTCAAAGCCAAGAAGAA


20110601C-009074 : ACCAGATTGTGTAGCTAAAGAATAAAATGGAAGAGTCCCCGCTGTGGCCCAATGGGATCG
                   ---------+---------+---------+---------+---------+---------+ 768
CLNT1_0019_G11.b : ACCAGATTGTGTAGCTAAAGAATAAAATGGAAGAGTCCCCGCTGTGGCCCAATGGGATCG
CLNT1_0086_D04.b : ACCAGATTGTGTAGCTAAAGAATAAAATGGAAGAGTCCCCGCTGTGGCCCAATGGGATCG
CLNT1_0151_F12.b : ACCAGATTGTGTAGCTAAAGAATAAAATGGAAGAGTCCCCGCTGTGGCCCAATGGGATCG
CLNT1_0086_D03.b : ACCAGATTGTGTAGCTAAAGAATAAAATGGAAGAGTCCCCGCTGTGGCCCAATGGGATCG
CLNT1_0032_B05.b : ACCAGATTGTGTAGCTAAAGAATAAAATGGAAGGGTCCCCGCTGTGGCCCAATGGGATCG
CLNT1_0152_H05.b : ACCAGATTGTGTAGCTAAAGAATAAAATGGAAGAGTCCCCGCTGTGGCCCCATGGGATCG


20110601C-009074 : GTGGTGTGTCTGCACCAGGACGCAAGTTTGATTCCCAGGCGGGCAAAGTTGGTTAAAGTA
                   ---------+---------+---------+---------+---------+---------+ 828
CLNT1_0019_G11.b : GTGGTGTGTCTGCACCAGGACGCAAGTTTGATTCCCAAGCGGGCAAAGTGG*TTAAAGTA
CLNT1_0086_D04.b : GTGGTGTGTCTGCACCAGGACGCANGTTTGATTCCCAGGCGGGCAAAGTGGNTTAAAGTA
CLNT1_0151_F12.b : GTGGTGTGTCTGCACCANGACGCAGGTTTGATTCCCAGGCGGGCAAAGTTGGTTAAAGTA
CLNT1_0086_D03.b : GTGGGGTGTCTGCACCAAGACGCCAGTTTGATTCCCAGCCGGGCAAAGTTG*GTAAAGTA
CLNT1_0032_B05.b : GTGGTGTGTCTGCACCAGGAACGCAGTTTGATTCCCAGGCGGGCAAAGTTGGTTAAAGTA
CLNT1_0152_H05.b : GTGGTGTGTCTGCACCAGGACGCAGGTTTGATTCCCAGGCGGGCAAAGTTGGT*AAAGTA


20110601C-009074 : TCTGGCGTTGCAGCTGGTCACAACTGTGGCCCCAATCTGATCCTCTGCCCAGAACATATA
                   ---------+---------+---------+---------+---------+---------+ 888
CLNT1_0019_G11.b : TCTGGCGTTGCAGCTGGTCACAACTGTGGCCCCAATCTGATCCTCTGCCCAGA*CATATA
CLNT1_0086_D04.b : TCTGGCGTTGCAGCTGGTCACAACTGTGGCCCCAATCTGATCCTCTGCCCAGAACATATA
CLNT1_0151_F12.b : TCTGGCGTTGCAGCTGGTCACAACTGTGGCCCC*ATCTGATCCTCTGCCCAGAAAATATA
CLNT1_0086_D03.b : TCTGGCGTTGCAGCTTGGCCAAAATGGGGCCCCCATCTGATCCTCTGCCCAaaaaatata
CLNT1_0032_B05.b : TCTGGCGTTGCAGCTGGTCAACACTGTGGCCCCAATCTGATCCTCTGCCCAGAACATATA
CLNT1_0152_H05.b : TCTGGCGTTGCAGCTGGTCACAACTGTGGCCC*AATCTGATTCTCTGCCCAGA*CATATA


20110601C-009074 : CCATGGAGTGCCCCCCCCAAAAAAAA**AATGCAAATAATAATTTGAACCATTTGAAAAA
                   ---------+---------+---------+---------+---------+---------+ 946
CLNT1_0019_G11.b : CCATGGAGTGCCCCCCCCCAAAAAAA**AATGCAAtactattttgaacatttgaaaatga
CLNT1_0086_D04.b : CCATGGAGTGCCCCCCCCAAAAAGAA**AATGCAAATActagtttgaaccatttgagatg
CLNT1_0151_F12.b : CCATGGAATGCCCCCCCCCAAAAAAAGAAATGCAAATACTAGTTTGGACCATTTGAaaat
CLNT1_0086_D03.b : caagggatgccccccccaaaaagaaaaggcaatactagtttggaccttttgaaatgaatt
CLNT1_0032_B05.b : CCATGGAGTGCCCCCCCCAAAAAGAA**AATGCAAATAACTATTTGAACCATTTGAAAAT
CLNT1_0152_H05.b : CCATGGAGTGCCCCCCCCAAAAAAGA**AATGGCAATACTAATTTGAAACATTTGAGAAA


20110601C-009074 : GATATTTAAAATC**TGCTTTTACAAGTTATAAGTCCAATAAGGAAAATTATCAAAAACG
                   ---------+---------+---------+---------+---------+---------+ 1004
CLNT1_0019_G11.b : aatttaaaatcatgcttttacaagttatagttcaataagggaatatatcctaaaactggg
CLNT1_0086_D04.b : atattaaaagtcatgcttttacaggtataagttcataatggaatatatctagaacctggg
CLNT1_0151_F12.b : gaaatttaaaagtccggcttttacaatttataagttcaaaaagggatattatcaaaaaac
CLNT1_0086_D03.b : ttaaagtcatgcttttacaattcataattcaaaaaggaaatttttttaaaaccggggcca
CLNT1_0032_B05.b : GATATTTAAAAGTCATGCTTTTACAAGTTATAatttcaataatggaaaattaacctaaaa
CLNT1_0152_H05.b : GATATTTAAAATC**TGCTTTTTCAAGTTAAAAGTCCAATAAGGAAAATTATCAAAAACG


20110601C-009074 : GGGCCAATTTATCCCAAGGTTTTTAAAAAGTCTCTTTGGAGTGACTTAAAAAAAAAAAAA
                   ---------+---------+---------+---------+---------+---------+ 1064
CLNT1_0019_G11.b : cgagtttatccaaaagttgttaaaaagtcatctataaggtgacttaaaaaaaaaaaatca
CLNT1_0086_D04.b : cgagttagtccaaggttgttaataatcccctatgagggacttaaaaaaaaaaaaaaaagg
CLNT1_0151_F12.b : cggggcaatttatcccaagggttttaataaagtctttttgaggggactaaaaaaaaaatc
CLNT1_0086_D03.b : acttaaccccaagttgtaaaaaaagcctctagcaggtgacttaaaaaaaaaaaaaaaaag
CLNT1_0032_B05.b : cctggggcaatttaatccaaagttgttaataaagtcattcttgaagggacttaaaaaaaa
CLNT1_0152_H05.b : GGGCCAATTTATCCCAAGGTTTTTAAAAAGTCTCTTTGGAGTGACTTAAAAAAAAAAAAA


20110601C-009074 : AAAGGCCATTGGCCCAACTGAAGTCGGGGCCCTAAAAATCAAAAAAAAAACCCCACCCCC
                   ---------+---------+---------+---------+---------+---------+ 1124
CLNT1_0019_G11.b : cccttctttcattgaaaacgggagggaaaggccattttccattaaaaaaaaaaaaaaagg
CLNT1_0086_D04.b : cacatggctcaacctgagttcggcgcctaatatttaaaaaaaactcccacctccccgaac
CLNT1_0151_F12.b : cacctttccttcacttaaagcggagagaaaaggccttttcttataaaaaaaaaaatcccc
CLNT1_0086_D03.b : ggccactgtgctcaatcctcgttcgagccctatataaattaaaaaaaaacctcccatctc
CLNT1_0032_B05.b : aaaaaaaaagccccatttgtctcaacttcagttcccgcccctatataatctaaaaaaaaa
CLNT1_0152_H05.b : AAAGGCCATTGGCCCAACTGAAGTCGGGGCCCTAAAAATCAAAAAAAAAACCCCACCCCC


20110601C-009074 : CCCGAATAAAAAAAAA............................................
                   ---------+---------+---------+---------+---------+---------+ 1140
CLNT1_0019_G11.b : ccattggtccaacttagggccggcccttaaattttaaaaaaaacccccccccccccccga
CLNT1_0086_D04.b : tgaaacaaatgaagcatgttttgtaaattttattgccttaagggttcaaaaacaaacccc
CLNT1_0151_F12.b : gggggggttaccaaaagggaaccttttaccggccccccgcaatttaatttcacaatcccc
CLNT1_0086_D03.b : cccctaaacctaaaataaagaaagaatgttttttcactttctttgctcctataggttaaa
CLNT1_0032_B05.b : cccccaaccttccctggaaccgaaaaaaaaaggaggcattgttgtttaaacttttttatg
CLNT1_0152_H05.b : CCCGAATAAAAAAAAAagaagcaatttttgtacctttttttccccttaagggtcaaaaaa


20110601C-009074 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1140
CLNT1_0019_G11.b : aatggaaaaaaagaaaagcctttgttttaaatagtt                       
CLNT1_0086_D04.b : aaattcaaaaaaattttccccttcattggtttgcaacacaagtattttgggggcccggaa
CLNT1_0151_F12.b : ttttgggaaaaagagggggggggcaccccggaaaatttttcgggaaaaaatgggcctttt
CLNT1_0086_D03.b : tcaagaatactaccaatttcaaaagagcatttatcaattctatggggtgtccactacacc
CLNT1_0032_B05.b : ccactataaggttcaaaaaaacaaatcccccaaatttccaaaaaaattttttcacggact
CLNT1_0152_H05.b : gacaacccccattttaaaaaacttttttccggtttatttggttgccacaaaaatatatag


20110601C-009074 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1140
CLNT1_0019_G11.b :                                                             
CLNT1_0086_D04.b : aaggaataatttctctccaaaaaaagcggggtggggggggggttcttccggggtttttcc
CLNT1_0151_F12.b : ttcttcctttataaaagaaaaaatccccccatcaaaattttacagcccccttt      
CLNT1_0086_D03.b : tcttttatgtgtgtctcgtccacaccataattctcctctccataacaacactatagatca
CLNT1_0032_B05.b : ttagggggtgtccacacccacaagaattatatgggggacccggcccaaatcaaattttct
CLNT1_0152_H05.b : tgggccggggccacaaatattcttctctctccaaacccacggggtgggggggggttctct


20110601C-009074 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1140
CLNT1_0019_G11.b :                                                             
CLNT1_0086_D04.b : ccggtgaaaaaaaaaagaagaaaaaaaagtttttttctccccaaaaaaaaagaa     
CLNT1_0151_F12.b :                                                             
CLNT1_0086_D03.b : cccgaggactctctcaagagtctttacactgtggaacgacaatgctatcctacatagccg
CLNT1_0032_B05.b : ct                                                         
CLNT1_0152_H05.b : tgggggtttttccggggtgaagaaataatatgagagaggaagggttttttttccccaaaa


20110601C-009074 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1140
CLNT1_0019_G11.b :                                                             
CLNT1_0086_D04.b :                                                             
CLNT1_0151_F12.b :                                                             
CLNT1_0086_D03.b : cctttttatcacc                                              
CLNT1_0032_B05.b :                                                             
CLNT1_0152_H05.b : aaacagaggggcagcgttgctcgcc